{"id":"https://openalex.org/W2996211332","doi":"https://doi.org/10.1109/tcbb.2019.2958803","title":"Designing a New Multi-Epitope Pertussis Vaccine with Highly Population Coverage Based on a Novel Sequence and Structural Filtration Algorithm","display_name":"Designing a New Multi-Epitope Pertussis Vaccine with Highly Population Coverage Based on a Novel Sequence and Structural Filtration Algorithm","publication_year":2019,"publication_date":"2019-12-10","ids":{"openalex":"https://openalex.org/W2996211332","doi":"https://doi.org/10.1109/tcbb.2019.2958803","mag":"2996211332","pmid":"https://pubmed.ncbi.nlm.nih.gov/31831431"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2019.2958803","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2958803","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024760238","display_name":"Atefeh Ghasemnejad","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152512","display_name":"Islamic Azad University Pharmaceutical Sciences Branch","ror":"https://ror.org/04sssnv16","country_code":"IR","type":"education","lineage":["https://openalex.org/I110525433","https://openalex.org/I4210152512"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Atefeh Ghasemnejad","raw_affiliation_strings":["Department of Biotechnology, Faculty of Advanced Sciences & Technology, Pharmaceutical Sciences Branch, Islamic Azad University, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Faculty of Advanced Sciences & Technology, Pharmaceutical Sciences Branch, Islamic Azad University, Tehran, Iran","institution_ids":["https://openalex.org/I4210152512"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013783342","display_name":"Samira Bazmara","orcid":null},"institutions":[{"id":"https://openalex.org/I1301411061","display_name":"Pasteur Institute of Iran","ror":"https://ror.org/00wqczk30","country_code":"IR","type":"facility","lineage":["https://openalex.org/I1301411061"]},{"id":"https://openalex.org/I4210088961","display_name":"Biotechnology Research Center","ror":"https://ror.org/013t96v18","country_code":"IR","type":"facility","lineage":["https://openalex.org/I163205636","https://openalex.org/I4210088961"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Samira Bazmara","raw_affiliation_strings":["Biotechnology Department, Biotechnology Research Center, Venom and Biotherapeutics Molecules Lab., Pasteur Institute of Iran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Biotechnology Department, Biotechnology Research Center, Venom and Biotherapeutics Molecules Lab., Pasteur Institute of Iran, Tehran, Iran","institution_ids":["https://openalex.org/I1301411061","https://openalex.org/I4210088961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030909952","display_name":"Mahsa Shadmani","orcid":null},"institutions":[{"id":"https://openalex.org/I1301411061","display_name":"Pasteur Institute of Iran","ror":"https://ror.org/00wqczk30","country_code":"IR","type":"facility","lineage":["https://openalex.org/I1301411061"]},{"id":"https://openalex.org/I4210088961","display_name":"Biotechnology Research Center","ror":"https://ror.org/013t96v18","country_code":"IR","type":"facility","lineage":["https://openalex.org/I163205636","https://openalex.org/I4210088961"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mahsa Shadmani","raw_affiliation_strings":["Biotechnology Department, Biotechnology Research Center, Venom and Biotherapeutics Molecules Lab., Pasteur Institute of Iran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Biotechnology Department, Biotechnology Research Center, Venom and Biotherapeutics Molecules Lab., Pasteur Institute of Iran, Tehran, Iran","institution_ids":["https://openalex.org/I1301411061","https://openalex.org/I4210088961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089440119","display_name":"Kamran Pooshang Bagheri","orcid":"https://orcid.org/0000-0003-0125-3918"},"institutions":[{"id":"https://openalex.org/I1301411061","display_name":"Pasteur Institute of Iran","ror":"https://ror.org/00wqczk30","country_code":"IR","type":"facility","lineage":["https://openalex.org/I1301411061"]},{"id":"https://openalex.org/I4210088961","display_name":"Biotechnology Research Center","ror":"https://ror.org/013t96v18","country_code":"IR","type":"facility","lineage":["https://openalex.org/I163205636","https://openalex.org/I4210088961"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Kamran Pooshang Bagheri","raw_affiliation_strings":["Biotechnology Department, Biotechnology Research Center, Venom and Biotherapeutics Molecules Lab., Pasteur Institute of Iran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Biotechnology Department, Biotechnology Research Center, Venom and Biotherapeutics Molecules Lab., Pasteur Institute of Iran, Tehran, Iran","institution_ids":["https://openalex.org/I1301411061","https://openalex.org/I4210088961"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5024760238"],"corresponding_institution_ids":["https://openalex.org/I4210152512"],"apc_list":null,"apc_paid":null,"fwci":0.1693,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.5814158,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"18","issue":"5","first_page":"1885","last_page":"1892"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9576640129089355},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6065270900726318},{"id":"https://openalex.org/keywords/pertussis-toxin","display_name":"Pertussis toxin","score":0.5584264397621155},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.557141125202179},{"id":"https://openalex.org/keywords/pertussis-vaccine","display_name":"Pertussis vaccine","score":0.46698611974716187},{"id":"https://openalex.org/keywords/filtration","display_name":"Filtration (mathematics)","score":0.4646762013435364},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4554732143878937},{"id":"https://openalex.org/keywords/peptide-vaccine","display_name":"Peptide vaccine","score":0.41453033685684204},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.3986620306968689},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3664819002151489},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.33182477951049805},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3305218517780304},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32784798741340637},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.26876747608184814},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1957624852657318},{"id":"https://openalex.org/keywords/immunization","display_name":"Immunization","score":0.14656555652618408},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13187530636787415}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9576640129089355},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6065270900726318},{"id":"https://openalex.org/C49773422","wikidata":"https://www.wikidata.org/wiki/Q4859345","display_name":"Pertussis toxin","level":4,"score":0.5584264397621155},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.557141125202179},{"id":"https://openalex.org/C2779634000","wikidata":"https://www.wikidata.org/wiki/Q7170955","display_name":"Pertussis vaccine","level":4,"score":0.46698611974716187},{"id":"https://openalex.org/C128489963","wikidata":"https://www.wikidata.org/wiki/Q1187724","display_name":"Filtration (mathematics)","level":2,"score":0.4646762013435364},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4554732143878937},{"id":"https://openalex.org/C2776789287","wikidata":"https://www.wikidata.org/wiki/Q7166532","display_name":"Peptide vaccine","level":4,"score":0.41453033685684204},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3986620306968689},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3664819002151489},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.33182477951049805},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3305218517780304},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32784798741340637},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.26876747608184814},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1957624852657318},{"id":"https://openalex.org/C2780801004","wikidata":"https://www.wikidata.org/wiki/Q1415366","display_name":"Immunization","level":3,"score":0.14656555652618408},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13187530636787415},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C80631254","wikidata":"https://www.wikidata.org/wiki/Q407438","display_name":"G protein","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000907","descriptor_name":"Antibodies, Bacterial","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000907","descriptor_name":"Antibodies, Bacterial","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000907","descriptor_name":"Antibodies, Bacterial","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010567","descriptor_name":"Pertussis Vaccine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D037342","descriptor_name":"Pertussis Toxin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2019.2958803","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2958803","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31831431","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31831431","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1595745006","https://openalex.org/W1795377508","https://openalex.org/W1869576842","https://openalex.org/W1946185675","https://openalex.org/W1973088910","https://openalex.org/W1977265813","https://openalex.org/W1979632514","https://openalex.org/W1987134040","https://openalex.org/W1988789252","https://openalex.org/W1996923138","https://openalex.org/W2001332558","https://openalex.org/W2007123966","https://openalex.org/W2010128084","https://openalex.org/W2011057428","https://openalex.org/W2015815278","https://openalex.org/W2019735225","https://openalex.org/W2024309140","https://openalex.org/W2032611480","https://openalex.org/W2034694458","https://openalex.org/W2035059264","https://openalex.org/W2038296759","https://openalex.org/W2039184617","https://openalex.org/W2054764131","https://openalex.org/W2059275162","https://openalex.org/W2059721250","https://openalex.org/W2071890088","https://openalex.org/W2075034167","https://openalex.org/W2087526889","https://openalex.org/W2090967369","https://openalex.org/W2094458603","https://openalex.org/W2098669559","https://openalex.org/W2099824218","https://openalex.org/W2106346566","https://openalex.org/W2124116262","https://openalex.org/W2125205448","https://openalex.org/W2127972779","https://openalex.org/W2130585520","https://openalex.org/W2132090032","https://openalex.org/W2132629607","https://openalex.org/W2133067061","https://openalex.org/W2143172175","https://openalex.org/W2144902261","https://openalex.org/W2330929472","https://openalex.org/W2397293145","https://openalex.org/W2586246990","https://openalex.org/W6654134415","https://openalex.org/W6658563077"],"related_works":["https://openalex.org/W2001572566","https://openalex.org/W1975698593","https://openalex.org/W4321482651","https://openalex.org/W2363997565","https://openalex.org/W1984145408","https://openalex.org/W2064551879","https://openalex.org/W2418460886","https://openalex.org/W2041892636","https://openalex.org/W4233540526","https://openalex.org/W164557136"],"abstract_inverted_index":{"Pertussis":[0],"vaccine":[1,67],"is":[2],"produced":[3],"from":[4],"physicochemically":[5],"inactivated":[6],"toxin":[7,96],"for":[8],"many":[9,156],"years.":[10],"Recent":[11],"advancements":[12],"in":[13,85,113,141,168],"immunoinformatics":[14],"[N.":[15],"Tomar":[16],"and":[17,33,49,80,143,148,204],"R.":[18],"K.":[19],"De,":[20],"\"Immunoinformatics:":[21],"an":[22],"integrated":[23],"scenario,\"":[24],"Immunology,":[25],"vol.":[26],"131,":[27],"no.":[28],"2,":[29],"pp.":[30],"153-168,":[31],"2010]":[32],"structural":[34],"bioinformatics":[35,71],"can":[36],"provide":[37],"a":[38,65,169,186],"new":[39],"multidisciplinary":[40],"approach":[41],"to":[42,177,180,191],"overcome":[43],"the":[44,60,94,106,114,139,144,162,174],"concerns":[45],"including":[46],"unwanted":[47,157,202],"antibodies":[48],"incomplete":[50],"population":[51,107,136],"coverage.":[52],"In":[53],"this":[54],"study":[55],"we":[56,171],"focused":[57],"on":[58,93,100],"solving":[59],"challenging":[61],"issues":[62],"by":[63],"designing":[64],"multi-epitope":[66],"(MEV)":[68],"using":[69],"rational":[70],"analyses.":[72],"The":[73,135],"frequencies":[74],"of":[75,109,138,165,185,193,201,208],"All":[76],"HLA":[77,163],"DP,":[78],"DQ,":[79],"DR":[81],"alleles":[82],"were":[83,97,130],"evaluated":[84],"almost":[86],"all":[87,166,178],"countries.":[88],"Strong":[89],"binder":[90,122,128,159],"surface":[91,126],"epitopes":[92,129],"pertussis":[95],"selected":[98,131],"based":[99],"our":[101],"novel":[102],"filtration":[103],"strategy.":[104],"Finally,":[105,124],"coverage":[108,137],"MEV":[110,140,187],"was":[111,146],"determined":[112],"candidate":[115,133],"country.":[116],"Filtration":[117],"steps":[118],"yielded":[119],"312":[120],"strong":[121,127,158],"epitopes.":[123,134,160],"8":[125],"as":[132,210],"France":[142],"world":[145],"98":[147],"100":[149],"percent,":[150],"respectively.":[151],"Our":[152],"algorithm":[153],"successfully":[154],"filtered":[155],"Considering":[161],"type":[164],"individuals":[167],"country,":[170],"theoretically":[172],"provided":[173],"maximum":[175],"chance":[176],"humans":[179],"be":[181,189],"vaccinated":[182],"efficiently.":[183],"Application":[184],"would":[188],"led":[190],"production":[192],"highly":[194],"efficient":[195],"target":[196],"specific":[197],"antibodies,":[198,203],"significant":[199],"reduction":[200],"avoid":[205],"possible":[206],"raising":[207],"auto-antibodies":[209],"well.":[211]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
