{"id":"https://openalex.org/W2978605731","doi":"https://doi.org/10.1109/tcbb.2019.2945291","title":"A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes","display_name":"A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes","publication_year":2019,"publication_date":"2019-10-04","ids":{"openalex":"https://openalex.org/W2978605731","doi":"https://doi.org/10.1109/tcbb.2019.2945291","mag":"2978605731","pmid":"https://pubmed.ncbi.nlm.nih.gov/31603792"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2019.2945291","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2945291","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9119144","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058227054","display_name":"Hector Carrillo-Cabada","orcid":"https://orcid.org/0000-0002-5823-9909"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hector Carrillo-Cabada","raw_affiliation_strings":["Department of Computer Science, University of New Mexico, Albuquerque, NM, USA"],"raw_orcid":"https://orcid.org/0000-0002-5823-9909","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Mexico, Albuquerque, NM, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029128893","display_name":"Jeremy Benson","orcid":"https://orcid.org/0000-0002-5686-2211"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy Benson","raw_affiliation_strings":["Department of Computer Science, University of New Mexico, Albuquerque, NM, USA"],"raw_orcid":"https://orcid.org/0000-0002-5686-2211","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Mexico, Albuquerque, NM, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087154415","display_name":"Asghar M. Razavi","orcid":"https://orcid.org/0000-0003-4639-5856"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Asghar M. Razavi","raw_affiliation_strings":["Weill Cornell Medical College, Cornell University, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Medical College, Cornell University, New York, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073794185","display_name":"Brianna S. Mulligan","orcid":null},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brianna Mulligan","raw_affiliation_strings":["Department of Computer Science, University of New Mexico, Albuquerque, NM, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Mexico, Albuquerque, NM, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082584620","display_name":"Michel A. Cuendet","orcid":"https://orcid.org/0000-0002-0754-3425"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michel A. Cuendet","raw_affiliation_strings":["Weill Cornell Medical College, Cornell University, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Medical College, Cornell University, New York, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014370221","display_name":"Harel Weinstein","orcid":"https://orcid.org/0000-0003-3473-9818"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harel Weinstein","raw_affiliation_strings":["Weill Cornell Medical College, Cornell University, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Medical College, Cornell University, New York, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078387820","display_name":"Michela Taufer","orcid":"https://orcid.org/0000-0002-0031-6377"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michela Taufer","raw_affiliation_strings":["University of Tennessee, Knoxville, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073203270","display_name":"Trilce Estrada","orcid":"https://orcid.org/0000-0001-7743-8754"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trilce Estrada","raw_affiliation_strings":["Department of Computer Science, University of New Mexico, Albuquerque, NM, USA"],"raw_orcid":"https://orcid.org/0000-0001-7743-8754","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Mexico, Albuquerque, NM, USA","institution_ids":["https://openalex.org/I169521973"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5058227054"],"corresponding_institution_ids":["https://openalex.org/I169521973"],"apc_list":null,"apc_paid":null,"fwci":0.3419,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60000284,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"18","issue":"4","first_page":"1336","last_page":"1349"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.8496088981628418},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.6827540993690491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6291015148162842},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5312556624412537},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5295653939247131},{"id":"https://openalex.org/keywords/trajectory","display_name":"Trajectory","score":0.4761276841163635},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4546249210834503},{"id":"https://openalex.org/keywords/protein-tertiary-structure","display_name":"Protein tertiary structure","score":0.442790150642395},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4241361618041992},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.41810864210128784},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3767998218536377},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3625340163707733},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1619691550731659},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13178274035453796},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09515613317489624},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08970490097999573}],"concepts":[{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.8496088981628418},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.6827540993690491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6291015148162842},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5312556624412537},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5295653939247131},{"id":"https://openalex.org/C13662910","wikidata":"https://www.wikidata.org/wiki/Q193139","display_name":"Trajectory","level":2,"score":0.4761276841163635},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4546249210834503},{"id":"https://openalex.org/C75599170","wikidata":"https://www.wikidata.org/wiki/Q898483","display_name":"Protein tertiary structure","level":2,"score":0.442790150642395},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4241361618041992},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41810864210128784},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3767998218536377},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3625340163707733},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1619691550731659},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13178274035453796},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09515613317489624},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08970490097999573},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2019.2945291","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2945291","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31603792","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31603792","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9119144","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9119144","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Trans Comput Biol Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9119144","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9119144","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Trans Comput Biol Bioinform","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3774571","display_name":null,"funder_award_id":"1453430","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5538080289","display_name":null,"funder_award_id":"1841758","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6226025055","display_name":null,"funder_award_id":"1741057","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7368046788","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":78,"referenced_works":["https://openalex.org/W103892688","https://openalex.org/W1492233634","https://openalex.org/W1513175642","https://openalex.org/W1519081160","https://openalex.org/W1676087401","https://openalex.org/W1686810756","https://openalex.org/W1978743178","https://openalex.org/W1995808589","https://openalex.org/W2002738511","https://openalex.org/W2011039300","https://openalex.org/W2014050554","https://openalex.org/W2022653138","https://openalex.org/W2024373869","https://openalex.org/W2029878928","https://openalex.org/W2036026175","https://openalex.org/W2041749630","https://openalex.org/W2049902088","https://openalex.org/W2054989395","https://openalex.org/W2058119134","https://openalex.org/W2074231493","https://openalex.org/W2081294880","https://openalex.org/W2087064593","https://openalex.org/W2095132973","https://openalex.org/W2098223336","https://openalex.org/W2103017472","https://openalex.org/W2106841278","https://openalex.org/W2111577229","https://openalex.org/W2112946416","https://openalex.org/W2117539524","https://openalex.org/W2123473763","https://openalex.org/W2129244579","https://openalex.org/W2130479394","https://openalex.org/W2144686793","https://openalex.org/W2158599032","https://openalex.org/W2161311439","https://openalex.org/W2163878064","https://openalex.org/W2167857702","https://openalex.org/W2170672962","https://openalex.org/W2183341477","https://openalex.org/W2194775991","https://openalex.org/W2268614568","https://openalex.org/W2283942397","https://openalex.org/W2345051977","https://openalex.org/W2366432631","https://openalex.org/W2396501900","https://openalex.org/W2563411328","https://openalex.org/W2578034899","https://openalex.org/W2583752887","https://openalex.org/W2584305206","https://openalex.org/W2592175280","https://openalex.org/W2604808360","https://openalex.org/W2612445135","https://openalex.org/W2615066396","https://openalex.org/W2619480236","https://openalex.org/W2754293187","https://openalex.org/W2777640671","https://openalex.org/W2779910604","https://openalex.org/W2790808809","https://openalex.org/W2888689618","https://openalex.org/W2889498145","https://openalex.org/W2889664156","https://openalex.org/W2949348468","https://openalex.org/W2962858109","https://openalex.org/W2963318898","https://openalex.org/W2963614249","https://openalex.org/W2999820612","https://openalex.org/W4230323859","https://openalex.org/W4241876622","https://openalex.org/W4244573926","https://openalex.org/W4297775537","https://openalex.org/W6630693096","https://openalex.org/W6637131719","https://openalex.org/W6637373629","https://openalex.org/W6649065937","https://openalex.org/W6686164453","https://openalex.org/W6704695948","https://openalex.org/W6733068509","https://openalex.org/W6737664043"],"related_works":["https://openalex.org/W51493542","https://openalex.org/W2034043843","https://openalex.org/W2888116067","https://openalex.org/W3108975412","https://openalex.org/W2050047172","https://openalex.org/W3131413015","https://openalex.org/W2114568928","https://openalex.org/W3094695530","https://openalex.org/W563837456","https://openalex.org/W1534364704"],"abstract_inverted_index":{"In":[0],"order":[1],"to":[2,13,23],"successfully":[3],"predict":[4],"a":[5,37,51],"proteins":[6],"function":[7,75],"throughout":[8],"its":[9,17,28],"trajectory,":[10],"in":[11,16,69,91],"addition":[12],"uncovering":[14],"changes":[15,90],"conformational":[18,89],"state,":[19],"it":[20],"is":[21],"necessary":[22],"employ":[24],"techniques":[25],"that":[26,40,57],"maintain":[27],"3D":[29],"information":[30],"while":[31],"performing":[32,73],"at":[33],"scale.":[34],"We":[35,62],"extend":[36],"protein":[38,74,92],"representation":[39],"encodes":[41],"secondary":[42],"and":[43,50,81,84,87],"tertiary":[44],"structure":[45],"into":[46],"fix-sized,":[47],"color":[48],"images,":[49],"neural":[52],"network":[53],"architecture":[54],"(called":[55],"GEM-net)":[56],"leverages":[58],"our":[59,67],"encoded":[60],"representation.":[61],"show":[63],"the":[64],"applicability":[65],"of":[66],"method":[68],"two":[70],"ways:":[71],"(1)":[72],"prediction,":[76],"hitting":[77],"accuracy":[78],"between":[79],"78":[80],"83":[82],"percent,":[83],"(2)":[85],"visualizing":[86],"detecting":[88],"trajectories":[93],"during":[94],"molecular":[95],"dynamics":[96],"simulations.":[97]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-09T13:55:54.758798","created_date":"2025-10-10T00:00:00"}
