{"id":"https://openalex.org/W2977712660","doi":"https://doi.org/10.1109/tcbb.2019.2945029","title":"CDPath: Cooperative Driver Pathways Discovery Using Integer Linear Programming and Markov Clustering","display_name":"CDPath: Cooperative Driver Pathways Discovery Using Integer Linear Programming and Markov Clustering","publication_year":2019,"publication_date":"2019-10-01","ids":{"openalex":"https://openalex.org/W2977712660","doi":"https://doi.org/10.1109/tcbb.2019.2945029","mag":"2977712660","pmid":"https://pubmed.ncbi.nlm.nih.gov/31581094"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2019.2945029","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2945029","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101501447","display_name":"Ziying Yang","orcid":"https://orcid.org/0000-0002-0370-958X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziying Yang","raw_affiliation_strings":["School of Software, Shandong University, Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027082940","display_name":"Guoxian Yu","orcid":"https://orcid.org/0000-0002-1667-6705"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoxian Yu","raw_affiliation_strings":["School of Software, Shandong University, Jinan, China"],"raw_orcid":"https://orcid.org/0000-0002-1667-6705","affiliations":[{"raw_affiliation_string":"School of Software, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079800756","display_name":"Maozu Guo","orcid":"https://orcid.org/0000-0001-6228-6276"},"institutions":[{"id":"https://openalex.org/I62853816","display_name":"Beijing University of Civil Engineering and Architecture","ror":"https://ror.org/02yj0p855","country_code":"CN","type":"education","lineage":["https://openalex.org/I62853816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Maozu Guo","raw_affiliation_strings":["School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0001-6228-6276","affiliations":[{"raw_affiliation_string":"School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture, Beijing, China","institution_ids":["https://openalex.org/I62853816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101023772","display_name":"Jiantao Yu","orcid":"https://orcid.org/0000-0001-7134-9021"},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiantao Yu","raw_affiliation_strings":["College of Information Engineering, North-West A&F University, Shaanxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, North-West A&F University, Shaanxi, China","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000755750","display_name":"Xiangliang Zhang","orcid":"https://orcid.org/0000-0002-3574-5665"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xiangliang Zhang","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0002-3574-5665","affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100384767","display_name":"Jun Wang","orcid":"https://orcid.org/0000-0002-5890-0365"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["School of Software, Shandong University, Jinan, China"],"raw_orcid":"https://orcid.org/0000-0002-5890-0365","affiliations":[{"raw_affiliation_string":"School of Software, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6831,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.67763396,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"18","issue":"4","first_page":"1384","last_page":"1395"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6273949146270752},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6069590449333191},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5300830602645874},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.4716690480709076},{"id":"https://openalex.org/keywords/integer-programming","display_name":"Integer programming","score":0.42361125349998474},{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.4100845456123352},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3076521158218384},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28015685081481934},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21047013998031616},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1849372386932373},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.10450157523155212}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6273949146270752},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6069590449333191},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5300830602645874},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.4716690480709076},{"id":"https://openalex.org/C56086750","wikidata":"https://www.wikidata.org/wiki/Q6042592","display_name":"Integer programming","level":2,"score":0.42361125349998474},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.4100845456123352},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3076521158218384},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28015685081481934},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21047013998031616},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1849372386932373},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.10450157523155212}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016889","descriptor_name":"Endometrial Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016889","descriptor_name":"Endometrial Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016889","descriptor_name":"Endometrial Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063646","descriptor_name":"Carcinogenesis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063646","descriptor_name":"Carcinogenesis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063646","descriptor_name":"Carcinogenesis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/tcbb.2019.2945029","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2945029","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31581094","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31581094","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:repository.kaust.edu.sa:10754/658582","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/658582","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/658583","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/658583","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G1439405331","display_name":null,"funder_award_id":"FCC/1/1976-19-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2533550532","display_name":null,"funder_award_id":"2452015060","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3605984960","display_name":null,"funder_award_id":"XDJK2019B024","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3900474127","display_name":"miRNA-\u57fa\u56e0\u53cc\u5c42\u7f51\u7edc\u7684\u6784\u5efa\u4e0e\u5206\u6790\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61571163","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4618271646","display_name":null,"funder_award_id":"2016YFC0901902","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5564147583","display_name":"\u9762\u5411\u53ef\u53d8\u526a\u63a5\u5f02\u6784\u4f53\u529f\u80fd\u9884\u6d4b\u7684\u6570\u636e\u6574\u5408\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61872300","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G659245102","display_name":null,"funder_award_id":"61873214","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6640186486","display_name":null,"funder_award_id":"61532014","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7148930410","display_name":"\u4e2a\u4f53-\u7fa4\u4f53\u65f6\u7a7a\u6d3b\u52a8\u8f68\u8ff9\u6316\u6398\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61871020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1663251599","https://openalex.org/W1783384641","https://openalex.org/W1903919646","https://openalex.org/W1964427001","https://openalex.org/W1966331733","https://openalex.org/W1967495064","https://openalex.org/W1980080677","https://openalex.org/W1996344455","https://openalex.org/W2011912935","https://openalex.org/W2012744533","https://openalex.org/W2017140755","https://openalex.org/W2030006812","https://openalex.org/W2042851051","https://openalex.org/W2044433401","https://openalex.org/W2055532123","https://openalex.org/W2060421431","https://openalex.org/W2060833569","https://openalex.org/W2070413419","https://openalex.org/W2073308507","https://openalex.org/W2073698315","https://openalex.org/W2095319945","https://openalex.org/W2096766502","https://openalex.org/W2102140136","https://openalex.org/W2104042033","https://openalex.org/W2116298046","https://openalex.org/W2116798163","https://openalex.org/W2117692326","https://openalex.org/W2121443461","https://openalex.org/W2121564430","https://openalex.org/W2121906867","https://openalex.org/W2122769974","https://openalex.org/W2122778851","https://openalex.org/W2123696077","https://openalex.org/W2126172213","https://openalex.org/W2138155367","https://openalex.org/W2140287290","https://openalex.org/W2144940507","https://openalex.org/W2148635345","https://openalex.org/W2150312232","https://openalex.org/W2150757282","https://openalex.org/W2163798887","https://openalex.org/W2413642399","https://openalex.org/W2568642260","https://openalex.org/W2611492308","https://openalex.org/W2896854156","https://openalex.org/W2963382551","https://openalex.org/W2964156730","https://openalex.org/W3024547790","https://openalex.org/W4230962320","https://openalex.org/W6715530190","https://openalex.org/W6755249930","https://openalex.org/W6852200865"],"related_works":["https://openalex.org/W2389529561","https://openalex.org/W1553222881","https://openalex.org/W4366776594","https://openalex.org/W2101406042","https://openalex.org/W3198504181","https://openalex.org/W2003003859","https://openalex.org/W2061819715","https://openalex.org/W1526088293","https://openalex.org/W2735663923","https://openalex.org/W2794334948"],"abstract_inverted_index":{"Discovering":[0],"driver":[1,46,56,93,122,150,159,193],"pathways":[2,28,86,94,111,160,186,194],"is":[3],"an":[4,39],"essential":[5],"task":[6],"to":[7,14,43,54,82,104],"understand":[8],"the":[9,74,89,117,156,164],"pathogenesis":[10],"of":[11,85,204],"cancer":[12,19,132,136],"and":[13,65,71,77,87,134,148,167,173,190],"design":[15],"precise":[16],"treatments":[17],"for":[18],"patients.":[20],"Increasing":[21],"evidences":[22],"have":[23],"been":[24],"indicating":[25],"that":[26,141],"multiple":[27],"often":[29],"function":[30],"cooperatively":[31],"in":[32,112,116],"carcinogenesis.":[33],"In":[34,154],"this":[35],"study,":[36],"we":[37],"propose":[38],"approach":[40],"called":[41],"CDPath":[42,48,126,142,178,205],"discover":[44],"cooperative":[45,92,121,158,192],"pathways.":[47,106,123],"first":[49],"uses":[50],"Integer":[51],"Linear":[52],"Programming":[53],"explore":[55],"core":[57],"modules":[58,114],"from":[59],"mutation":[60],"profiles":[61],"by":[62,72],"enforcing":[63],"co-occurrence":[64],"functional":[66],"interaction":[67,102],"relations":[68],"between":[69,185],"modules,":[70],"maximizing":[73],"mutual":[75],"exclusivity":[76],"coverage":[78],"within":[79],"modules.":[80],"Next,":[81],"enforce":[83],"cooperation":[84],"help":[88],"follow-up":[90],"exact":[91],"discovery,":[95],"it":[96,109],"performs":[97],"Markov":[98],"clustering":[99],"on":[100,127],"pathway-pathway":[101],"network":[103],"cluster":[105],"After":[107],"that,":[108],"identifies":[110],"different":[113],"but":[115],"same":[118],"clusters":[119],"as":[120],"We":[124],"apply":[125],"two":[128],"TCGA":[129],"datasets:":[130],"breast":[131],"(BRCA)":[133],"endometrial":[135],"(UCEC).":[137],"The":[138,201],"results":[139],"show":[140],"can":[143,179],"identify":[144],"known":[145],"(i.e.,":[146,152],"TP53)":[147],"potential":[149,182],"genes":[151],"SPTBN2).":[153],"addition,":[155],"identified":[157],"are":[161,169,206],"related":[162],"with":[163,171],"target":[165],"cancer,":[166],"they":[168],"involved":[170],"carcinogenesis":[172],"several":[174],"key":[175],"biological":[176,183],"processes.":[177],"uncover":[180],"more":[181,191],"associations":[184],"(over":[187,195],"100":[188],"percent)":[189,197],"200":[196],"than":[198],"competitive":[199],"approaches.":[200],"demo":[202],"codes":[203],"available":[207],"at":[208],"http://mlda.swu.edu.cn/codes.php?name=CDPath.":[209]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2019-10-10T00:00:00"}
