{"id":"https://openalex.org/W2971827596","doi":"https://doi.org/10.1109/tcbb.2019.2936836","title":"FPGA Accelerated Analysis of Boolean Gene Regulatory Networks","display_name":"FPGA Accelerated Analysis of Boolean Gene Regulatory Networks","publication_year":2019,"publication_date":"2019-09-03","ids":{"openalex":"https://openalex.org/W2971827596","doi":"https://doi.org/10.1109/tcbb.2019.2936836","mag":"2971827596"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2019.2936836","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2936836","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9286984/08823021.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/8857/9286984/08823021.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005561269","display_name":"Matteo Manica","orcid":"https://orcid.org/0000-0002-8872-0269"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Matteo Manica","raw_affiliation_strings":["ETH Z\u00fcrich, Z\u00fcrich, Switzerland","IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026275592","display_name":"Raphael Polig","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Raphael Polig","raw_affiliation_strings":["IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001142966","display_name":"Mitra Purandare","orcid":"https://orcid.org/0000-0002-9184-9514"},"institutions":[{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Mitra Purandare","raw_affiliation_strings":["IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045422133","display_name":"Roland Mathis","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Roland Mathis","raw_affiliation_strings":["IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001983294","display_name":"Christoph Hagleitner","orcid":"https://orcid.org/0000-0002-6815-7835"},"institutions":[{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Christoph Hagleitner","raw_affiliation_strings":["IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016524881","display_name":"Mar\u00eda Rodr\u00edguez Mart\u00ednez","orcid":"https://orcid.org/0000-0003-3766-4233"},"institutions":[{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Maria Rodriguez Martinez","raw_affiliation_strings":["IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland"],"affiliations":[{"raw_affiliation_string":"IBM Research Z\u00fcrich, R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5005561269"],"corresponding_institution_ids":["https://openalex.org/I35440088","https://openalex.org/I4210126328"],"apc_list":null,"apc_paid":null,"fwci":0.1718,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.53132193,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"17","issue":"6","first_page":"2141","last_page":"2147"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7643315196037292},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.7630484700202942},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.724190354347229},{"id":"https://openalex.org/keywords/verilog","display_name":"Verilog","score":0.5923796892166138},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5519166588783264},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.5424218773841858},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5188571214675903},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.4874120056629181},{"id":"https://openalex.org/keywords/and-inverter-graph","display_name":"And-inverter graph","score":0.44537287950515747},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.4435510039329529},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.43992170691490173},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3417811393737793},{"id":"https://openalex.org/keywords/boolean-circuit","display_name":"Boolean circuit","score":0.3374873101711273},{"id":"https://openalex.org/keywords/computer-engineering","display_name":"Computer engineering","score":0.33341675996780396},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.3243033289909363},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.22209057211875916},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1406855583190918}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7643315196037292},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7630484700202942},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.724190354347229},{"id":"https://openalex.org/C2779030575","wikidata":"https://www.wikidata.org/wiki/Q827773","display_name":"Verilog","level":3,"score":0.5923796892166138},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5519166588783264},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.5424218773841858},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5188571214675903},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.4874120056629181},{"id":"https://openalex.org/C196836630","wikidata":"https://www.wikidata.org/wiki/Q4753279","display_name":"And-inverter graph","level":4,"score":0.44537287950515747},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.4435510039329529},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.43992170691490173},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3417811393737793},{"id":"https://openalex.org/C141796577","wikidata":"https://www.wikidata.org/wiki/Q837479","display_name":"Boolean circuit","level":3,"score":0.3374873101711273},{"id":"https://openalex.org/C113775141","wikidata":"https://www.wikidata.org/wiki/Q428691","display_name":"Computer engineering","level":1,"score":0.33341675996780396},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.3243033289909363},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.22209057211875916},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1406855583190918},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/tcbb.2019.2936836","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2936836","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9286984/08823021.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/458486","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/458486","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics, 17 (6)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:zenodo.org:4954146","is_oa":true,"landing_page_url":"https://doi.org/10.1109/TCBB.2019.2936836","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Xplore, 17(6), 2141 - 2147, (2019-09-03)","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000458486","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000458486","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1109/tcbb.2019.2936836","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2936836","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9286984/08823021.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2151326881","display_name":null,"funder_award_id":"668858","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5036817778","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innov","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5451116430","display_name":null,"funder_award_id":"826121","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8633428685","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innovat","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2971827596.pdf","grobid_xml":"https://content.openalex.org/works/W2971827596.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W135270437","https://openalex.org/W1830972360","https://openalex.org/W1927360907","https://openalex.org/W1963855808","https://openalex.org/W1969547738","https://openalex.org/W1972166408","https://openalex.org/W1977198605","https://openalex.org/W1989284002","https://openalex.org/W2031369606","https://openalex.org/W2041289840","https://openalex.org/W2042431901","https://openalex.org/W2049047355","https://openalex.org/W2053961182","https://openalex.org/W2055605599","https://openalex.org/W2069125012","https://openalex.org/W2072890688","https://openalex.org/W2072891907","https://openalex.org/W2092264363","https://openalex.org/W2092755129","https://openalex.org/W2103454055","https://openalex.org/W2103723044","https://openalex.org/W2103892573","https://openalex.org/W2112764635","https://openalex.org/W2117523590","https://openalex.org/W2119530812","https://openalex.org/W2120947607","https://openalex.org/W2122902176","https://openalex.org/W2123998089","https://openalex.org/W2127899308","https://openalex.org/W2129325583","https://openalex.org/W2132935366","https://openalex.org/W2134978629","https://openalex.org/W2138228997","https://openalex.org/W2139391027","https://openalex.org/W2151852639","https://openalex.org/W2166214692","https://openalex.org/W2170654682","https://openalex.org/W2173231526","https://openalex.org/W2262294211","https://openalex.org/W2303576309","https://openalex.org/W2529634546","https://openalex.org/W2593809500","https://openalex.org/W2614193845","https://openalex.org/W2763711418","https://openalex.org/W2787244801","https://openalex.org/W2811402744","https://openalex.org/W2890743457","https://openalex.org/W2963357480","https://openalex.org/W6605493013"],"related_works":["https://openalex.org/W2063425181","https://openalex.org/W2060171268","https://openalex.org/W2728195892","https://openalex.org/W2516690985","https://openalex.org/W3029381898","https://openalex.org/W2062972911","https://openalex.org/W3144510369","https://openalex.org/W1976822807","https://openalex.org/W2246807618","https://openalex.org/W4241453319"],"abstract_inverted_index":{"Boolean":[0,21,85,140],"models":[1,22],"are":[2,51,69],"a":[3,31,80,94,115,126,137,144,181],"powerful":[4,52],"abstraction":[5],"for":[6,33,84],"qualitative":[7],"modeling":[8],"of":[9,17,122,139,189],"gene":[10],"regulatory":[11],"networks.":[12,76],"With":[13],"the":[14,43,90,133],"recent":[15],"availability":[16],"advanced":[18],"high-throughput":[19],"technologies,":[20],"have":[23,39],"increasingly":[24],"grown":[25],"in":[26,160],"size":[27],"and":[28,99],"complexity,":[29],"posing":[30],"challenge":[32],"existing":[34],"software":[35,128,194],"simulation":[36,82,129],"tools":[37],"that":[38,56,107,152,168],"not":[40],"scaled":[41],"at":[42,176],"same":[44,134],"speed.":[45],"Field":[46],"Programmable":[47],"Gate":[48],"Arrays":[49],"(FPGAs)":[50],"reconfigurable":[53],"integrated":[54],"circuits":[55],"can":[57],"offer":[58],"massive":[59],"performance":[60,157],"improvements.":[61],"Due":[62],"to":[63,72,92,103,114,172,186,192],"their":[64],"highly":[65],"parallel":[66],"nature,":[67],"FPGAs":[68],"well":[70],"suited":[71],"simulate":[73],"complex":[74],"molecular":[75],"We":[77,118],"present":[78],"here":[79],"new":[81,161],"framework":[83,154],"models,":[86],"which":[87],"first":[88],"converts":[89],"model":[91],"Verilog,":[93],"standardized":[95],"hardware":[96],"description":[97],"language,":[98],"then":[100],"connects":[101],"it":[102],"an":[104,110,120,177],"execution":[105],"core":[106],"runs":[108],"on":[109,132,136,143],"FPGA":[111],"coherently":[112],"attached":[113],"POWER8":[116],"processor.":[117],"report":[119],"order":[121],"magnitude":[123,190],"speedup":[124,182],"over":[125],"multi-threaded":[127],"tool":[130],"running":[131],"processor":[135],"selection":[138],"models.":[141],"Analysis":[142],"T-cell":[145],"large":[146],"granular":[147],"lymphocyte":[148],"leukemia":[149],"(T-LGL)":[150],"demonstrates":[151],"our":[153,169],"achieves":[155],"consistent":[156],"improvements":[158],"resulting":[159],"biological":[162],"insights.":[163],"In":[164],"addition,":[165],"we":[166],"show":[167],"solution":[170],"allows":[171],"perform":[173],"attractor":[174],"detection":[175],"unprecedented":[178],"speed,":[179],"exhibiting":[180],"ranging":[183],"from":[184],"one":[185],"three":[187],"orders":[188],"compared":[191],"alternative":[193],"solutions.":[195]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2019-09-12T00:00:00"}