{"id":"https://openalex.org/W2943653773","doi":"https://doi.org/10.1109/tcbb.2019.2914383","title":"Algorithms for the Sequential Reprogramming of Boolean Networks","display_name":"Algorithms for the Sequential Reprogramming of Boolean Networks","publication_year":2019,"publication_date":"2019-05-02","ids":{"openalex":"https://openalex.org/W2943653773","doi":"https://doi.org/10.1109/tcbb.2019.2914383","mag":"2943653773","pmid":"https://pubmed.ncbi.nlm.nih.gov/31056515"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2019.2914383","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2914383","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065542246","display_name":"Hugues Mandon","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210104198","display_name":"Laboratoire Sp\u00e9cification et V\u00e9rification","ror":"https://ror.org/01kz1bj67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I11559806","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210104198","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Hugues Mandon","raw_affiliation_strings":["INRIA and LSV, CNRS (UMR 8643) and ENS Paris-Saclay, Universit\u00e9 Paris-Saclay, France","BioInfo - LRI - Bioinformatique (LRI) (Universit\u00e9 Paris Sud\r\nB\u00e2t. 650 Lovelace\r\n91405 Orsay Cedex - France)","LSV - Laboratoire Sp\u00e9cification et V\u00e9rification [Cachan] (B\u00e2timent d'Alembert 61 Avenue du Pr\u00e9sident Wilson 94235 CACHAN CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"INRIA and LSV, CNRS (UMR 8643) and ENS Paris-Saclay, Universit\u00e9 Paris-Saclay, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"BioInfo - LRI - Bioinformatique (LRI) (Universit\u00e9 Paris Sud\r\nB\u00e2t. 650 Lovelace\r\n91405 Orsay Cedex - France)","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804"]},{"raw_affiliation_string":"LSV - Laboratoire Sp\u00e9cification et V\u00e9rification [Cachan] (B\u00e2timent d'Alembert 61 Avenue du Pr\u00e9sident Wilson 94235 CACHAN CEDEX - France)","institution_ids":["https://openalex.org/I4210104198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063180740","display_name":"Cui Su","orcid":"https://orcid.org/0000-0001-6519-4588"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Cui Su","raw_affiliation_strings":["SnT, University of Luxembourg, Esch-sur-Alzette, Luxembourg","SnT - Interdisciplinary Centre for Security, Reliability and Trust [Luxembourg] (6, rue Richard Couhenhove-Kalergi L-1359 Luxembourg - Luxembourg)"],"affiliations":[{"raw_affiliation_string":"SnT, University of Luxembourg, Esch-sur-Alzette, Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"SnT - Interdisciplinary Centre for Security, Reliability and Trust [Luxembourg] (6, rue Richard Couhenhove-Kalergi L-1359 Luxembourg - Luxembourg)","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073684178","display_name":"Jun Pang","orcid":"https://orcid.org/0000-0002-4521-4112"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Jun Pang","raw_affiliation_strings":["FSTC and SnT, University of Luxembourg, Esch-sur-Alzette, Luxembourg","FSTC - Faculty of Science, Technology and Communication [Luxembourg] (6, rue Richard Coudenhove-Kalergi\r\nL-1359 Luxembourg - Luxembourg)","SnT - Interdisciplinary Centre for Security, Reliability and Trust [Luxembourg] (6, rue Richard Couhenhove-Kalergi L-1359 Luxembourg - Luxembourg)"],"affiliations":[{"raw_affiliation_string":"FSTC and SnT, University of Luxembourg, Esch-sur-Alzette, Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"FSTC - Faculty of Science, Technology and Communication [Luxembourg] (6, rue Richard Coudenhove-Kalergi\r\nL-1359 Luxembourg - Luxembourg)","institution_ids":[]},{"raw_affiliation_string":"SnT - Interdisciplinary Centre for Security, Reliability and Trust [Luxembourg] (6, rue Richard Couhenhove-Kalergi L-1359 Luxembourg - Luxembourg)","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100683996","display_name":"Soumya Paul","orcid":"https://orcid.org/0000-0002-0115-4189"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Soumya Paul","raw_affiliation_strings":["FSTC, University of Luxembourg, Esch-sur-Alzette, Luxembourg","FSTC - Faculty of Science, Technology and Communication [Luxembourg] (6, rue Richard Coudenhove-Kalergi\r\nL-1359 Luxembourg - Luxembourg)"],"affiliations":[{"raw_affiliation_string":"FSTC, University of Luxembourg, Esch-sur-Alzette, Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"FSTC - Faculty of Science, Technology and Communication [Luxembourg] (6, rue Richard Coudenhove-Kalergi\r\nL-1359 Luxembourg - Luxembourg)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008279822","display_name":"Stefan Haar","orcid":"https://orcid.org/0000-0002-1892-2703"},"institutions":[{"id":"https://openalex.org/I11559806","display_name":"\u00c9cole Normale Sup\u00e9rieure Paris-Saclay","ror":"https://ror.org/00hx6zz33","country_code":"FR","type":"education","lineage":["https://openalex.org/I11559806","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210104198","display_name":"Laboratoire Sp\u00e9cification et V\u00e9rification","ror":"https://ror.org/01kz1bj67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I11559806","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210104198","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Stefan Haar","raw_affiliation_strings":["LSV, ENS Cachan, INRIA, CNRS, Universit\u00e9 Paris-Saclay, Saint-Aubin, France","MEXICO - Modeling and Exploitation of Interaction and Concurrency (LSV, ENS Cachan 61 av pr\u00e9sident Wilson 94235 Cachan cedex - France)","LSV - Laboratoire Sp\u00e9cification et V\u00e9rification [Cachan] (B\u00e2timent d'Alembert 61 Avenue du Pr\u00e9sident Wilson 94235 CACHAN CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"LSV, ENS Cachan, INRIA, CNRS, Universit\u00e9 Paris-Saclay, Saint-Aubin, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"MEXICO - Modeling and Exploitation of Interaction and Concurrency (LSV, ENS Cachan 61 av pr\u00e9sident Wilson 94235 Cachan cedex - France)","institution_ids":["https://openalex.org/I11559806"]},{"raw_affiliation_string":"LSV - Laboratoire Sp\u00e9cification et V\u00e9rification [Cachan] (B\u00e2timent d'Alembert 61 Avenue du Pr\u00e9sident Wilson 94235 CACHAN CEDEX - France)","institution_ids":["https://openalex.org/I4210104198"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067946028","display_name":"Lo\u00efc Paulev\u00e9","orcid":"https://orcid.org/0000-0002-7219-2027"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Loic Pauleve","raw_affiliation_strings":["CNRS, LRI UMR 8623, Universit\u00e9 Paris-Sud, Orsay Cedex, France","LaBRI - Laboratoire Bordelais de Recherche en Informatique (Domaine Universitaire 351, cours de la Lib\u00e9ration 33405 Talence Cedex - France)","BioInfo - LRI - Bioinformatique (LRI) (Universit\u00e9 Paris Sud\r\nB\u00e2t. 650 Lovelace\r\n91405 Orsay Cedex - France)"],"affiliations":[{"raw_affiliation_string":"CNRS, LRI UMR 8623, Universit\u00e9 Paris-Sud, Orsay Cedex, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210144804"]},{"raw_affiliation_string":"LaBRI - Laboratoire Bordelais de Recherche en Informatique (Domaine Universitaire 351, cours de la Lib\u00e9ration 33405 Talence Cedex - France)","institution_ids":["https://openalex.org/I4210142254"]},{"raw_affiliation_string":"BioInfo - LRI - Bioinformatique (LRI) (Universit\u00e9 Paris Sud\r\nB\u00e2t. 650 Lovelace\r\n91405 Orsay Cedex - France)","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5065542246"],"corresponding_institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210104198","https://openalex.org/I4210144804"],"apc_list":null,"apc_paid":null,"fwci":1.2024,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.78607392,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"16","issue":"5","first_page":"1610","last_page":"1619"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reachability","display_name":"Reachability","score":0.747298002243042},{"id":"https://openalex.org/keywords/reprogramming","display_name":"Reprogramming","score":0.7133530378341675},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6809533834457397},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.6687000393867493},{"id":"https://openalex.org/keywords/attractor","display_name":"Attractor","score":0.5523727536201477},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5437638759613037},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.52569580078125},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.48423004150390625},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.46152013540267944},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.454256534576416},{"id":"https://openalex.org/keywords/binary-decision-diagram","display_name":"Binary decision diagram","score":0.42667174339294434},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4203941822052002},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.302060067653656},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2699592709541321},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2325289249420166},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1511385142803192},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09409216046333313}],"concepts":[{"id":"https://openalex.org/C136643341","wikidata":"https://www.wikidata.org/wiki/Q1361526","display_name":"Reachability","level":2,"score":0.747298002243042},{"id":"https://openalex.org/C77255625","wikidata":"https://www.wikidata.org/wiki/Q402093","display_name":"Reprogramming","level":3,"score":0.7133530378341675},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6809533834457397},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.6687000393867493},{"id":"https://openalex.org/C164380108","wikidata":"https://www.wikidata.org/wiki/Q507187","display_name":"Attractor","level":2,"score":0.5523727536201477},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5437638759613037},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.52569580078125},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.48423004150390625},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.46152013540267944},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.454256534576416},{"id":"https://openalex.org/C3309909","wikidata":"https://www.wikidata.org/wiki/Q864155","display_name":"Binary decision diagram","level":2,"score":0.42667174339294434},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4203941822052002},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.302060067653656},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2699592709541321},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2325289249420166},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1511385142803192},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09409216046333313},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000067470","descriptor_name":"Cellular Reprogramming Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000067470","descriptor_name":"Cellular Reprogramming Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000067470","descriptor_name":"Cellular Reprogramming Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054338","descriptor_name":"Cell Transdifferentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054338","descriptor_name":"Cell Transdifferentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054338","descriptor_name":"Cell Transdifferentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/tcbb.2019.2914383","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2914383","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31056515","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31056515","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-02113864v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02113864","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, 16 (5), pp.1610-1619. &#x27E8;10.1109/TCBB.2019.2914383&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:orbilu.uni.lu:10993/40672","is_oa":false,"landing_page_url":"https://orbilu.uni.lu/handle/10993/40672","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16 (5), 1610-1619 (2019)","raw_type":"peer reviewed"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7900000214576721,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G1109700036","display_name":null,"funder_award_id":"ANR-16-CE12-003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1922638022","display_name":null,"funder_award_id":"INTER/ANR/15/11191283","funder_id":"https://openalex.org/F4320310700","funder_display_name":"Universit\u00e9 du Luxembourg"},{"id":"https://openalex.org/G2204419101","display_name":null,"funder_award_id":"ANR-16-CE12-0034","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2875348234","display_name":null,"funder_award_id":"ANR-11-LABEX-0045-DIGICOSME","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3024506935","display_name":null,"funder_award_id":"ANR-11-IDEX-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3335229504","display_name":null,"funder_award_id":"Avenir","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4866930200","display_name":null,"funder_award_id":"ANR-11-IDEX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4889790396","display_name":null,"funder_award_id":"PEPS INS2I","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"},{"id":"https://openalex.org/G5700374056","display_name":null,"funder_award_id":"ANR-11-IDEX-0003-02","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"},{"id":"https://openalex.org/G6187605657","display_name":null,"funder_award_id":"ANR-11-IDEX-0003-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6350981294","display_name":null,"funder_award_id":"11-IDEX-0003","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"},{"id":"https://openalex.org/G7428494302","display_name":null,"funder_award_id":"ANR-16-CE12","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7758152977","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"},{"id":"https://openalex.org/G7823808512","display_name":null,"funder_award_id":"ANR-11-IDEX-000","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8917127843","display_name":null,"funder_award_id":"LABEX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320310700","display_name":"Universit\u00e9 du Luxembourg","ror":"https://ror.org/036x5ad56"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320336508","display_name":"Institut des sciences de l'information et de leurs interactions","ror":"https://ror.org/04z22qz54"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1852997998","https://openalex.org/W1927360907","https://openalex.org/W1994143452","https://openalex.org/W1998356614","https://openalex.org/W2027703497","https://openalex.org/W2031522732","https://openalex.org/W2042459594","https://openalex.org/W2053367939","https://openalex.org/W2079928950","https://openalex.org/W2099251677","https://openalex.org/W2104039751","https://openalex.org/W2114342401","https://openalex.org/W2117395648","https://openalex.org/W2167437179","https://openalex.org/W2269418830","https://openalex.org/W2273958019","https://openalex.org/W2305823485","https://openalex.org/W2337391735","https://openalex.org/W2563625368","https://openalex.org/W2596666705","https://openalex.org/W2751010539","https://openalex.org/W2769476224","https://openalex.org/W2888210389","https://openalex.org/W6730884530"],"related_works":["https://openalex.org/W257150968","https://openalex.org/W3140601928","https://openalex.org/W1977451125","https://openalex.org/W2168881618","https://openalex.org/W1574278709","https://openalex.org/W86917440","https://openalex.org/W2057159994","https://openalex.org/W2109998394","https://openalex.org/W1608751818","https://openalex.org/W2133491672"],"abstract_inverted_index":{"Cellular":[0],"reprogramming,":[1],"a":[2,85,108],"technique":[3],"that":[4,58,63,147],"opens":[5],"huge":[6],"opportunities":[7],"in":[8,55],"modern":[9],"and":[10,52,91,101],"regenerative":[11],"medicine,":[12],"heavily":[13],"relies":[14],"on":[15,38,93,141],"identifying":[16],"key":[17],"genes":[18],"to":[19,41,43,97,120,151,155],"perturb.":[20],"Most":[21],"of":[22,67,88,111,127,131],"the":[23,33,44,64,68,71,102,122,132,144],"existing":[24],"computational":[25],"methods":[26],"for":[27,74,138],"controlling":[28],"which":[29],"attractor":[30],"(steady":[31],"state)":[32],"cell":[34],"will":[35],"reach":[36],"focus":[37],"finding":[39],"mutations":[40],"apply":[42,135],"initial":[45],"state.":[46],"However,":[47],"it":[48],"has":[49],"been":[50],"shown,":[51],"is":[53],"proved":[54],"this":[56],"article,":[57],"waiting":[59],"between":[60],"perturbations":[61,140,154],"so":[62],"update":[65],"dynamics":[66,100],"system":[69],"prepares":[70],"ground,":[72],"allows":[73],"new":[75],"reprogramming":[76],"strategies.":[77],"To":[78],"identify":[79],"such":[80],"sequential":[81,112,153],"perturbations,":[82,113],"we":[83,148],"consider":[84],"qualitative":[86],"model":[87,98],"regulatory":[89],"networks,":[90],"rely":[92],"Binary":[94],"Decision":[95],"Diagrams":[96],"their":[99],"putative":[103],"perturbations.":[104],"Our":[105],"method":[106],"establishes":[107],"set":[109],"identification":[110],"whether":[114],"permanent":[115],"(mutations)":[116],"or":[117,124],"only":[118],"temporary,":[119],"achieve":[121,156],"existential":[123],"inevitable":[125],"reachability":[126],"an":[128,136],"arbitrary":[129],"state":[130],"system.":[133],"We":[134],"implementation":[137],"temporary":[139],"models":[142],"from":[143],"literature,":[145],"illustrating":[146],"are":[149],"able":[150],"derive":[152],"trans-differentiation.":[157]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
