{"id":"https://openalex.org/W2916367282","doi":"https://doi.org/10.1109/tcbb.2019.2900040","title":"Identification of Short Exons Disunited by a Short Intron in Eukaryotic DNA Regions","display_name":"Identification of Short Exons Disunited by a Short Intron in Eukaryotic DNA Regions","publication_year":2019,"publication_date":"2019-02-18","ids":{"openalex":"https://openalex.org/W2916367282","doi":"https://doi.org/10.1109/tcbb.2019.2900040","mag":"2916367282","pmid":"https://pubmed.ncbi.nlm.nih.gov/30794188"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2019.2900040","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2900040","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011940629","display_name":"Sunil Datt Sharma","orcid":"https://orcid.org/0000-0001-8783-7855"},"institutions":[{"id":"https://openalex.org/I153954893","display_name":"Jaypee University of Information Technology","ror":"https://ror.org/00hshrf16","country_code":"IN","type":"education","lineage":["https://openalex.org/I153954893"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sunildatt Sharma","raw_affiliation_strings":["Department of Electronics and Communication Engieering, Jaypee University of Information Technology, Solan, H.P., India","Department of Electronics and Instrumentation Engieering, SATI, Vidisha, M.P., India"],"raw_orcid":"https://orcid.org/0000-0001-8783-7855","affiliations":[{"raw_affiliation_string":"Department of Electronics and Communication Engieering, Jaypee University of Information Technology, Solan, H.P., India","institution_ids":["https://openalex.org/I153954893"]},{"raw_affiliation_string":"Department of Electronics and Instrumentation Engieering, SATI, Vidisha, M.P., India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100365785","display_name":"Sanjeev Sharma","orcid":"https://orcid.org/0000-0002-3273-0708"},"institutions":[{"id":"https://openalex.org/I153954893","display_name":"Jaypee University of Information Technology","ror":"https://ror.org/00hshrf16","country_code":"IN","type":"education","lineage":["https://openalex.org/I153954893"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sanjeev Narayan Sharma","raw_affiliation_strings":["Department of Electronics and Communication Engieering, Jaypee University of Information Technology, Solan, H.P., India","Department of Electronics and Instrumentation Engieering, SATI, Vidisha, M.P., India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics and Communication Engieering, Jaypee University of Information Technology, Solan, H.P., India","institution_ids":["https://openalex.org/I153954893"]},{"raw_affiliation_string":"Department of Electronics and Instrumentation Engieering, SATI, Vidisha, M.P., India","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083394108","display_name":"Rajiv Saxena","orcid":"https://orcid.org/0000-0001-7500-4629"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rajiv Saxena","raw_affiliation_strings":["Jaypee University, Anoopshahr, U.P., India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jaypee University, Anoopshahr, U.P., India","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.2823,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.79601579,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"17","issue":"5","first_page":"1660","last_page":"1670"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.9116495847702026},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.8781183958053589},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.7175292372703552},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6176673769950867},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5464164614677429},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5196903347969055},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.48176145553588867},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4688851535320282},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.44671177864074707},{"id":"https://openalex.org/keywords/splice","display_name":"splice","score":0.4330142140388489},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3103618025779724},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.07695168256759644}],"concepts":[{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.9116495847702026},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.8781183958053589},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.7175292372703552},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6176673769950867},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5464164614677429},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5196903347969055},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.48176145553588867},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4688851535320282},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.44671177864074707},{"id":"https://openalex.org/C2780989783","wikidata":"https://www.wikidata.org/wiki/Q7578557","display_name":"splice","level":3,"score":0.4330142140388489},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3103618025779724},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.07695168256759644},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012815","descriptor_name":"Signal Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012815","descriptor_name":"Signal Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012815","descriptor_name":"Signal Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2019.2900040","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2019.2900040","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30794188","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30794188","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.6700000166893005}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1540446958","https://openalex.org/W1555148682","https://openalex.org/W1556789591","https://openalex.org/W1592365591","https://openalex.org/W1965263090","https://openalex.org/W1980571521","https://openalex.org/W1983947465","https://openalex.org/W1986754283","https://openalex.org/W1997012911","https://openalex.org/W2003605043","https://openalex.org/W2014620714","https://openalex.org/W2019319438","https://openalex.org/W2021020563","https://openalex.org/W2039680623","https://openalex.org/W2044925215","https://openalex.org/W2050381884","https://openalex.org/W2060808191","https://openalex.org/W2074319689","https://openalex.org/W2076620045","https://openalex.org/W2087440101","https://openalex.org/W2098961477","https://openalex.org/W2101159760","https://openalex.org/W2110564440","https://openalex.org/W2114794982","https://openalex.org/W2121058813","https://openalex.org/W2123769889","https://openalex.org/W2129321262","https://openalex.org/W2130429766","https://openalex.org/W2135120651","https://openalex.org/W2148771849","https://openalex.org/W2151100808","https://openalex.org/W2157859997","https://openalex.org/W2163266690","https://openalex.org/W2415176682","https://openalex.org/W2748699124","https://openalex.org/W2769405608","https://openalex.org/W6633204899"],"related_works":["https://openalex.org/W2083833254","https://openalex.org/W1978448871","https://openalex.org/W1995725827","https://openalex.org/W2082856106","https://openalex.org/W1973164572","https://openalex.org/W1988731563","https://openalex.org/W2068962637","https://openalex.org/W3090446747","https://openalex.org/W2083872838","https://openalex.org/W2608025469"],"abstract_inverted_index":{"Weak":[0],"codon":[1],"bias":[2],"in":[3,14,35],"short":[4,10,30,69,95,108,113,155,159],"exons":[5,31,109,156],"and":[6,73,121],"separation":[7],"by":[8,111,138],"a":[9,112,158],"intron":[11,71,139,148],"induces":[12],"difficulty":[13],"extracting":[15],"period-3":[16,58],"component":[17],"that":[18],"marks":[19],"the":[20,36,117,124,130,133,144,151],"presence":[21,152],"of":[22,28,93,106,119,135,143,153],"exonic":[23,120],"regions.":[24],"The":[25],"annotation":[26,118],"task":[27],"such":[29,94],"has":[32],"been":[33,51,65,82],"addressed":[34],"proposed":[37,125],"model":[38],"independent":[39],"signal":[40],"processing":[41],"based":[42],"method":[43],"with":[44,100],"following":[45],"features:":[46],"(a)":[47],"DNA":[48],"sequences":[49],"have":[50,64,81],"mapped":[52],"using":[53],"multiple":[54,62,78],"mapping":[55,79],"schemes,":[56],"(b)":[57],"spectrums":[59,75],"corresponding":[60,76],"to":[61,67,77,84],"mappings":[63],"optimized":[66],"enhance":[68],"exon-short":[70],"discrimination,":[72],"(c)":[74],"schemes":[80],"subjected":[83],"Principal":[85],"Component":[86],"Analysis":[87],"(PCA)":[88],"for":[89,132,147],"identifying":[90],"greater":[91],"number":[92],"exons.":[96],"A":[97],"comparative":[98],"study":[99],"other":[101],"methods":[102,131],"indicates":[103],"improved":[104],"detection":[105,134],"contiguous":[107],"disunited":[110],"intron.":[114,160],"Apart":[115],"from":[116],"intronic":[122],"regions,":[123],"algorithm":[126],"can":[127],"also":[128],"complement":[129],"alternative":[136],"splicing":[137],"retention,":[140],"as":[141],"one":[142],"characteristic":[145],"feature":[146],"retention":[149],"is":[150],"two":[154],"flanking":[157]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
