{"id":"https://openalex.org/W2901312953","doi":"https://doi.org/10.1109/tcbb.2018.2883041","title":"NTSHMDA: Prediction of Human Microbe-Disease Association Based on Random Walk by Integrating Network Topological Similarity","display_name":"NTSHMDA: Prediction of Human Microbe-Disease Association Based on Random Walk by Integrating Network Topological Similarity","publication_year":2018,"publication_date":"2018-11-23","ids":{"openalex":"https://openalex.org/W2901312953","doi":"https://doi.org/10.1109/tcbb.2018.2883041","mag":"2901312953","pmid":"https://pubmed.ncbi.nlm.nih.gov/30489271"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2018.2883041","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2883041","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026469278","display_name":"Jiawei Luo","orcid":"https://orcid.org/0000-0003-2385-8272"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiawei Luo","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0003-2385-8272","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066627747","display_name":"Yahui Long","orcid":"https://orcid.org/0000-0002-2765-3007"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yahui Long","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-2765-3007","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I16609230"],"apc_list":null,"apc_paid":null,"fwci":3.6088,"has_fulltext":false,"cited_by_count":140,"citation_normalized_percentile":{"value":0.94178794,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"17","issue":"4","first_page":"1341","last_page":"1351"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.8330483436584473},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.6963244676589966},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.670259952545166},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.48373985290527344},{"id":"https://openalex.org/keywords/human-disease","display_name":"Human disease","score":0.48006972670555115},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4618285000324249},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44676294922828674},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3864932060241699},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3639426827430725},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32031553983688354},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.30233174562454224},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.26772624254226685},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25985187292099},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.11058732867240906},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08163073658943176},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.0792006254196167}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.8330483436584473},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.6963244676589966},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.670259952545166},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.48373985290527344},{"id":"https://openalex.org/C2988867146","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Human disease","level":3,"score":0.48006972670555115},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4618285000324249},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44676294922828674},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3864932060241699},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3639426827430725},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32031553983688354},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.30233174562454224},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.26772624254226685},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25985187292099},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.11058732867240906},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08163073658943176},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0792006254196167},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001249","descriptor_name":"Asthma","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001249","descriptor_name":"Asthma","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001249","descriptor_name":"Asthma","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2018.2883041","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2883041","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30489271","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30489271","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7900000214576721}],"awards":[{"id":"https://openalex.org/G1342612824","display_name":"MicroRNA\u5bf9\u57fa\u56e0\u7684\u8c03\u63a7\u4f5c\u7528\u53ca\u5176\u4e0e\u75be\u75c5\u5173\u8054\u5173\u7cfb\u7684\u8ba1\u7b97\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61873089","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2889707724","display_name":"\u57fa\u4e8e\u65b0\u4e00\u4ee3\u6d4b\u5e8f\u6570\u636e\u7684\u590d\u6742\u75be\u75c5\u7279\u5f02\u5171\u8c03\u63a7\u7f51\u7edc\u6784\u5efa\u53ca\u5206\u6790\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61572180","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W935252537","https://openalex.org/W1607743621","https://openalex.org/W1965008649","https://openalex.org/W1970767980","https://openalex.org/W1971106435","https://openalex.org/W1971415551","https://openalex.org/W2008054523","https://openalex.org/W2009451461","https://openalex.org/W2012606594","https://openalex.org/W2018240294","https://openalex.org/W2023046869","https://openalex.org/W2028520715","https://openalex.org/W2029705820","https://openalex.org/W2037279825","https://openalex.org/W2056782822","https://openalex.org/W2057700969","https://openalex.org/W2058662072","https://openalex.org/W2060915038","https://openalex.org/W2077804520","https://openalex.org/W2084793748","https://openalex.org/W2088108775","https://openalex.org/W2089423792","https://openalex.org/W2112874908","https://openalex.org/W2124408542","https://openalex.org/W2128769815","https://openalex.org/W2129158737","https://openalex.org/W2131186249","https://openalex.org/W2139119508","https://openalex.org/W2142474397","https://openalex.org/W2152970345","https://openalex.org/W2158567957","https://openalex.org/W2162190649","https://openalex.org/W2166562121","https://openalex.org/W2169733549","https://openalex.org/W2189673550","https://openalex.org/W2193804249","https://openalex.org/W2276034039","https://openalex.org/W2313125707","https://openalex.org/W2320977646","https://openalex.org/W2322763599","https://openalex.org/W2333144702","https://openalex.org/W2344103844","https://openalex.org/W2359747920","https://openalex.org/W2402184163","https://openalex.org/W2460882296","https://openalex.org/W2512308096","https://openalex.org/W2516934006","https://openalex.org/W2567465856","https://openalex.org/W2576112076","https://openalex.org/W2590194234","https://openalex.org/W2737240357","https://openalex.org/W2739664659","https://openalex.org/W2748593099","https://openalex.org/W2750900465","https://openalex.org/W2752131265","https://openalex.org/W2765928324","https://openalex.org/W2769416656","https://openalex.org/W2775679313","https://openalex.org/W2776589520","https://openalex.org/W2780584018","https://openalex.org/W2780779540","https://openalex.org/W2799307902","https://openalex.org/W2806774580","https://openalex.org/W2886229822","https://openalex.org/W2949685204","https://openalex.org/W4285719527","https://openalex.org/W6694287506","https://openalex.org/W6731933549"],"related_works":["https://openalex.org/W2366107444","https://openalex.org/W4388145910","https://openalex.org/W2381570729","https://openalex.org/W1976205134","https://openalex.org/W4248336175","https://openalex.org/W2031260042","https://openalex.org/W2391445434","https://openalex.org/W3009369890","https://openalex.org/W4312490297","https://openalex.org/W2032548952"],"abstract_inverted_index":{"Accumulating":[0],"clinic":[1],"evidences":[2],"have":[3],"demonstrated":[4],"that":[5,121],"the":[6,18,59,64,136],"microbes":[7,31,163],"residing":[8],"in":[9,17,135],"human":[10,26,38,82],"bodies":[11],"play":[12],"a":[13,54,76,103],"significantly":[14],"important":[15],"role":[16],"formation,":[19],"development,":[20],"and":[21,41,46,63,73,142,153,172,188,197],"progression":[22],"of":[23,130,138,158],"various":[24],"complex":[25],"diseases.":[27],"Identifying":[28],"latent":[29],"related":[30],"for":[32,170,194],"disease":[33,39,43,60],"could":[34],"provide":[35,191],"insight":[36],"into":[37],"mechanisms":[40],"promote":[42],"prevention,":[44],"diagnosis,":[45],"treatment.":[47],"In":[48,147,177],"this":[49],"paper,":[50],"we":[51],"first":[52],"construct":[53],"heterogeneous":[55],"network":[56,62,67,91,114],"by":[57,89,166],"connecting":[58],"similarity":[61,66,93],"microbe":[65],"through":[68],"known":[69],"microbe-disease":[70,83,97],"association":[71,98],"network,":[72],"then":[74],"develop":[75],"novel":[77,185],"computational":[78],"model":[79],"to":[80,183],"predict":[81],"associations":[84,187],"based":[85,112],"on":[86,113],"random":[87],"walk":[88],"integrating":[90],"topological":[92,115],"(NTSHMDA).":[94],"Specifically,":[95],"each":[96],"pair":[99],"is":[100],"regarded":[101],"as":[102],"distinct":[104],"relationship":[105],"level":[106],"and,":[107],"thus,":[108],"assigned":[109],"different":[110],"weights":[111],"similarity.":[116],"The":[117],"experimental":[118],"results":[119],"show":[120],"NTSHMDA":[122,179],"outperforms":[123],"some":[124],"state-of-the-art":[125],"methods":[126],"with":[127],"average":[128],"AUCs":[129],"0.9070,":[131],"0.8896":[132],"\u00b1":[133],"0.0038":[134],"frameworks":[137],"Leave-one-out":[139],"cross":[140,144],"validation":[141],"5-fold":[143],"validation,":[145],"respectively.":[146,176],"case":[148],"studies,":[149],"9,":[150,154],"18,":[151,155],"38":[152],"45":[156],"out":[157],"top-10,":[159],"20,":[160],"50":[161],"candidate":[162],"are":[164],"verified":[165],"recently":[167],"published":[168],"literatures":[169],"asthma":[171],"inflammatory":[173],"bowel":[174],"disease,":[175],"conclusion,":[178],"has":[180],"potential":[181],"ability":[182],"identify":[184],"disease-microbe":[186],"can":[189],"also":[190],"valuable":[192],"information":[193],"drug":[195],"discovery":[196],"biological":[198],"researches.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":29},{"year":2023,"cited_by_count":24},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
