{"id":"https://openalex.org/W2895607073","doi":"https://doi.org/10.1109/tcbb.2018.2874238","title":"Identifying Key Genes of Liver Cancer by Networking of Multiple Data Sets","display_name":"Identifying Key Genes of Liver Cancer by Networking of Multiple Data Sets","publication_year":2018,"publication_date":"2018-10-05","ids":{"openalex":"https://openalex.org/W2895607073","doi":"https://doi.org/10.1109/tcbb.2018.2874238","mag":"2895607073","pmid":"https://pubmed.ncbi.nlm.nih.gov/30296239"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2018.2874238","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2874238","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010612686","display_name":"Su-Ping Deng","orcid":"https://orcid.org/0000-0001-6619-6497"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Su-Ping Deng","raw_affiliation_strings":["Institute of Machines Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0001-6619-6497","affiliations":[{"raw_affiliation_string":"Institute of Machines Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102948489","display_name":"Wei-Li Guo","orcid":"https://orcid.org/0000-0002-3952-2389"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei-Li Guo","raw_affiliation_strings":["Institute of Machines Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Machines Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010612686"],"corresponding_institution_ids":["https://openalex.org/I116953780"],"apc_list":null,"apc_paid":null,"fwci":0.4654,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.64018017,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"16","issue":"3","first_page":"792","last_page":"800"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7071373462677002},{"id":"https://openalex.org/keywords/liver-cancer","display_name":"Liver cancer","score":0.689403235912323},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.6443044543266296},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5990513563156128},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5306388735771179},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4966273903846741},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.47756868600845337},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.475463330745697},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.42190417647361755},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3444671034812927},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.25143927335739136},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24888041615486145}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7071373462677002},{"id":"https://openalex.org/C2776231280","wikidata":"https://www.wikidata.org/wiki/Q623031","display_name":"Liver cancer","level":3,"score":0.689403235912323},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.6443044543266296},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5990513563156128},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5306388735771179},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4966273903846741},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.47756868600845337},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.475463330745697},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.42190417647361755},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3444671034812927},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.25143927335739136},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24888041615486145},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2018.2874238","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2874238","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30296239","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30296239","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5299999713897705,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1596993240","display_name":null,"funder_award_id":"61772370","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2265736844","display_name":null,"funder_award_id":"U1611265","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3263865980","display_name":null,"funder_award_id":"61520106006","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G331170790","display_name":null,"funder_award_id":"61572447","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3651798849","display_name":null,"funder_award_id":"61472173","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3686096675","display_name":null,"funder_award_id":"31571364","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6388758975","display_name":null,"funder_award_id":"61472280","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G710220644","display_name":null,"funder_award_id":"61672382","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G74711194","display_name":null,"funder_award_id":"61732012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8417010444","display_name":null,"funder_award_id":"61672203","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8543904368","display_name":null,"funder_award_id":"61532008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W744787342","https://openalex.org/W1494484168","https://openalex.org/W1757407923","https://openalex.org/W1967926933","https://openalex.org/W1972898190","https://openalex.org/W1980320914","https://openalex.org/W1987951943","https://openalex.org/W2002582122","https://openalex.org/W2002613261","https://openalex.org/W2007618103","https://openalex.org/W2028069703","https://openalex.org/W2028928739","https://openalex.org/W2035945778","https://openalex.org/W2039926571","https://openalex.org/W2043570667","https://openalex.org/W2045021315","https://openalex.org/W2055620707","https://openalex.org/W2065769502","https://openalex.org/W2070040136","https://openalex.org/W2077522929","https://openalex.org/W2081693451","https://openalex.org/W2090123586","https://openalex.org/W2092153955","https://openalex.org/W2095293504","https://openalex.org/W2096173332","https://openalex.org/W2099887488","https://openalex.org/W2103351853","https://openalex.org/W2111002549","https://openalex.org/W2116759194","https://openalex.org/W2117412805","https://openalex.org/W2118258530","https://openalex.org/W2118886215","https://openalex.org/W2121227735","https://openalex.org/W2127616922","https://openalex.org/W2132078790","https://openalex.org/W2138424758","https://openalex.org/W2145955247","https://openalex.org/W2147339185","https://openalex.org/W2150248355","https://openalex.org/W2159675211","https://openalex.org/W2165198854","https://openalex.org/W2165891030","https://openalex.org/W2166832355","https://openalex.org/W2243873100","https://openalex.org/W2294639133","https://openalex.org/W2340125363","https://openalex.org/W2399797906","https://openalex.org/W2421111122","https://openalex.org/W2429047191","https://openalex.org/W2526968500","https://openalex.org/W2578337681","https://openalex.org/W2611696724","https://openalex.org/W2626976964","https://openalex.org/W2756351165","https://openalex.org/W2757358462","https://openalex.org/W2766041915","https://openalex.org/W2780936345","https://openalex.org/W3103071483","https://openalex.org/W6679516547","https://openalex.org/W6744976115"],"related_works":["https://openalex.org/W4291149842","https://openalex.org/W3183103530","https://openalex.org/W4242024617","https://openalex.org/W3211646335","https://openalex.org/W2440771908","https://openalex.org/W4210515056","https://openalex.org/W1982897783","https://openalex.org/W1967925377","https://openalex.org/W4390792543","https://openalex.org/W4388869614"],"abstract_inverted_index":{"Liver":[0],"cancer":[1,44,121,154],"is":[2,19],"one":[3],"of":[4,33,41,118,129,151,170,183,190],"the":[5,9,31,34,42,75,119,124,132,152,159,171],"deadliest":[6],"cancers":[7],"in":[8,30,131,155],"world.":[10],"To":[11,37,73],"find":[12,74],"effective":[13],"therapies":[14],"for":[15],"this":[16],"cancer,":[17],"it":[18],"indispensable":[20],"to":[21,56,114,147,180,186],"identify":[22,38,115,167],"key":[23,39,116,136,149,168,188],"genes,":[24,61,105,137],"which":[25,62],"may":[26],"play":[27],"critical":[28],"roles":[29],"incidence":[32],"liver":[35,43,120,153,172],"cancer.":[36,173],"genes":[40,82,117,169,189],"with":[45],"high":[46],"accuracy,":[47],"we":[48],"integrated":[49],"multiple":[50],"microarray":[51],"gene":[52],"expression":[53],"data":[54,71,184],"sets":[55,185],"compute":[57],"common":[58],"differentially":[59],"expressed":[60],"will":[63],"result":[64],"more":[65],"accurate":[66],"than":[67],"those":[68],"from":[69],"individual":[70],"set.":[72],"main":[76],"functions":[77],"or":[78],"pathways":[79],"that":[80,162],"these":[81,104],"are":[83],"involved":[84],"in,":[85],"some":[86],"enrichment":[87,93,96],"analyses":[88],"were":[89],"performed":[90],"including":[91],"functional":[92],"analysis,":[94,97],"pathway":[95],"and":[98,112,126,142],"disease":[99],"association":[100],"study.":[101],"Based":[102],"on":[103],"a":[106],"protein-protein":[107],"interaction":[108],"network":[109],"was":[110],"constructed":[111],"analyzed":[113],"by":[122],"combining":[123],"local":[125],"global":[127],"influence":[128],"nodes":[130],"network.":[133],"The":[134],"identified":[135],"such":[138],"as":[139],"TOP2A,":[140],"ESR1,":[141],"KMO,":[143],"have":[144],"been":[145],"demonstrated":[146],"be":[148,178],"biomarkers":[150],"many":[156],"publications.":[157],"All":[158],"results":[160],"suggest":[161],"our":[163,175],"method":[164,176],"can":[165,177],"effectively":[166],"Moreover,":[174],"applied":[179],"other":[181,191],"types":[182],"select":[187],"complex":[192],"diseases.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
