{"id":"https://openalex.org/W2894348124","doi":"https://doi.org/10.1109/tcbb.2018.2872574","title":"Inferring Disease-Associated microRNAs in Heterogeneous Networks with Node Attributes","display_name":"Inferring Disease-Associated microRNAs in Heterogeneous Networks with Node Attributes","publication_year":2018,"publication_date":"2018-09-28","ids":{"openalex":"https://openalex.org/W2894348124","doi":"https://doi.org/10.1109/tcbb.2018.2872574","mag":"2894348124","pmid":"https://pubmed.ncbi.nlm.nih.gov/30281474"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2018.2872574","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2872574","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028616130","display_name":"Ping Xuan","orcid":"https://orcid.org/0000-0001-5328-691X"},"institutions":[{"id":"https://openalex.org/I1300757298","display_name":"Heilongjiang University of Science and Technology","ror":"https://ror.org/030xwyx96","country_code":"CN","type":"education","lineage":["https://openalex.org/I1300757298"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Xuan","raw_affiliation_strings":["Department of Computer Science and Technology, Heilongjiang University, Harbin, China"],"raw_orcid":"https://orcid.org/0000-0001-5328-691X","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Heilongjiang University, Harbin, China","institution_ids":["https://openalex.org/I1300757298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090151522","display_name":"Tonghui Shen","orcid":null},"institutions":[{"id":"https://openalex.org/I1300757298","display_name":"Heilongjiang University of Science and Technology","ror":"https://ror.org/030xwyx96","country_code":"CN","type":"education","lineage":["https://openalex.org/I1300757298"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tonghui Shen","raw_affiliation_strings":["Department of Computer Science and Technology, Heilongjiang University, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Heilongjiang University, Harbin, China","institution_ids":["https://openalex.org/I1300757298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100692934","display_name":"Xiao Wang","orcid":"https://orcid.org/0000-0003-1390-9152"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Wang","raw_affiliation_strings":["Department of Computer Science and Technology, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004963500","display_name":"Tiangang Zhang","orcid":"https://orcid.org/0000-0002-7528-3581"},"institutions":[{"id":"https://openalex.org/I55022517","display_name":"Heilongjiang University","ror":"https://ror.org/04zyhq975","country_code":"CN","type":"education","lineage":["https://openalex.org/I55022517"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tiangang Zhang","raw_affiliation_strings":["Department of Mathematical Science, Heilongjiang University, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematical Science, Heilongjiang University, Harbin, China","institution_ids":["https://openalex.org/I55022517"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068659777","display_name":"Weixiong Zhang","orcid":"https://orcid.org/0000-0002-4998-9791"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]},{"id":"https://openalex.org/I31590910","display_name":"Jianghan University","ror":"https://ror.org/041c9x778","country_code":"CN","type":"education","lineage":["https://openalex.org/I31590910"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Weixiong Zhang","raw_affiliation_strings":["Department of Computer Science and Engineering, Washington University in St. Louis, Saint Louis, USA","Institute for Systems Biology, Jianghan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Washington University in St. Louis, Saint Louis, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Institute for Systems Biology, Jianghan University, Wuhan, China","institution_ids":["https://openalex.org/I31590910"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.2636,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.76761196,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"17","issue":"3","first_page":"1019","last_page":"1031"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.68538498878479},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6825592517852783},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5798925757408142},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5397511124610901},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5065556764602661},{"id":"https://openalex.org/keywords/heterogeneous-network","display_name":"Heterogeneous network","score":0.47924092411994934},{"id":"https://openalex.org/keywords/non-negative-matrix-factorization","display_name":"Non-negative matrix factorization","score":0.4112164080142975},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4080307185649872},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40357765555381775},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27751219272613525},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21089547872543335},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.1906588077545166},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14503103494644165},{"id":"https://openalex.org/keywords/wireless-network","display_name":"Wireless network","score":0.11256784200668335}],"concepts":[{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.68538498878479},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6825592517852783},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5798925757408142},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5397511124610901},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5065556764602661},{"id":"https://openalex.org/C158207573","wikidata":"https://www.wikidata.org/wiki/Q5747224","display_name":"Heterogeneous network","level":4,"score":0.47924092411994934},{"id":"https://openalex.org/C152671427","wikidata":"https://www.wikidata.org/wiki/Q10843505","display_name":"Non-negative matrix factorization","level":4,"score":0.4112164080142975},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4080307185649872},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40357765555381775},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27751219272613525},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21089547872543335},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.1906588077545166},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14503103494644165},{"id":"https://openalex.org/C108037233","wikidata":"https://www.wikidata.org/wiki/Q11375","display_name":"Wireless network","level":3,"score":0.11256784200668335},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2018.2872574","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2872574","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30281474","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30281474","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G2711026825","display_name":null,"funder_award_id":"JCL201405","funder_id":"https://openalex.org/F4320310113","funder_display_name":"Heilongjiang University"},{"id":"https://openalex.org/G2787605438","display_name":null,"funder_award_id":"R01GM100364","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3200522107","display_name":null,"funder_award_id":"61702296","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3497312273","display_name":null,"funder_award_id":"F2015013","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"},{"id":"https://openalex.org/G6203476898","display_name":null,"funder_award_id":"F2018028","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"},{"id":"https://openalex.org/G8657472010","display_name":null,"funder_award_id":"61302139","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320310113","display_name":"Heilongjiang University","ror":"https://ror.org/04zyhq975"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323085","display_name":"Natural Science Foundation of Heilongjiang Province","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W176887922","https://openalex.org/W1668324142","https://openalex.org/W1966716734","https://openalex.org/W1967087625","https://openalex.org/W1968300632","https://openalex.org/W1968936982","https://openalex.org/W1970431570","https://openalex.org/W1977697731","https://openalex.org/W1984079222","https://openalex.org/W1987248329","https://openalex.org/W2022732522","https://openalex.org/W2036773063","https://openalex.org/W2045800886","https://openalex.org/W2047967134","https://openalex.org/W2077327925","https://openalex.org/W2096100878","https://openalex.org/W2101293029","https://openalex.org/W2103151642","https://openalex.org/W2103838923","https://openalex.org/W2108230379","https://openalex.org/W2110234420","https://openalex.org/W2116348800","https://openalex.org/W2117391818","https://openalex.org/W2117997562","https://openalex.org/W2118814218","https://openalex.org/W2123688186","https://openalex.org/W2126619650","https://openalex.org/W2128768066","https://openalex.org/W2129158737","https://openalex.org/W2132694427","https://openalex.org/W2135029798","https://openalex.org/W2141222510","https://openalex.org/W2151519667","https://openalex.org/W2152091242","https://openalex.org/W2153210075","https://openalex.org/W2158135353","https://openalex.org/W2169216997","https://openalex.org/W2171230529","https://openalex.org/W2171260596","https://openalex.org/W2244718251","https://openalex.org/W2313125707","https://openalex.org/W2507608866","https://openalex.org/W2537429907","https://openalex.org/W2574217686","https://openalex.org/W2592189645","https://openalex.org/W2601934706","https://openalex.org/W2750900465","https://openalex.org/W2752943586","https://openalex.org/W2757038198","https://openalex.org/W2765950793","https://openalex.org/W2780777007","https://openalex.org/W2781702232","https://openalex.org/W2799307902","https://openalex.org/W2809363952","https://openalex.org/W3146565636","https://openalex.org/W6607207477","https://openalex.org/W6655994215","https://openalex.org/W6680012447"],"related_works":["https://openalex.org/W4297433825","https://openalex.org/W4318261659","https://openalex.org/W2122823937","https://openalex.org/W2101428145","https://openalex.org/W3215340255","https://openalex.org/W2048687561","https://openalex.org/W4312861905","https://openalex.org/W2536669487","https://openalex.org/W2088770317","https://openalex.org/W2048358126"],"abstract_inverted_index":{"Identification":[0],"of":[1,20,48,55,68,93,106,149,152,162,171,236,246,256,363,368],"disease-associated":[2],"microRNAs":[3],"(disease":[4],"miRNAs)":[5],"is":[6,154,280,344],"an":[7],"essential":[8],"step":[9],"towards":[10],"discovering":[11,339],"causal":[12],"miRNAs":[13,39,74,83,107,141,163,208,290,373],"and":[14,37,40,42,60,71,88,108,118,164,174,204,213,231,253,271,273,291,298,331,377],"understanding":[15],"disease":[16,27,58,98,127,140,341,372],"pathogenesis.":[17],"Two":[18],"sources":[19],"information":[21,54,67],"can":[22],"be":[23,219,264],"exploited":[24],"for":[25,97,138,338,349,354,374],"predicting":[26,139],"miRNAs:":[28],"one":[29],"includes":[30,65],"the":[31,43,46,66,69,94,104,116,150,179,198,222,234,237,251,286,295,303,313,319,351,361,370,378],"connections":[32,105,117],"between":[33,35,38,289],"miRNAs,":[34],"diseases,":[36,41,376],"other":[44],"has":[45],"attributes":[47,121,196,255],"miRNA":[49,56,99,119,172,199,269],"nodes.":[50],"The":[51,63,365],"former":[52],"contains":[53],"similarities,":[57,59],"miRNA-disease":[61,191],"associations.":[62,300],"latter":[64],"families":[70,173,212,230,270],"clusters":[72,214],"that":[73,84,224],"belong":[75],"to.":[76],"Similar":[77],"diseases":[78,223,261,292,315,334],"are":[79,215,225,384],"usually":[80],"associated":[81,220,265],"with":[82,145,194,221,266,302],"have":[85,201],"similar":[86,260],"functions":[87],"common":[89,211,268],"attributes.":[90,147,176,206],"However,":[91],"most":[92],"existing":[95],"methods":[96,305],"prediction":[100,244,278],"focus":[101],"only":[102,285,311],"on":[103,167,312,318,324],"diseases.":[109,364],"It":[110],"remains":[111],"challenging":[112],"to":[113,122,155,218,228,248,263,381],"adequately":[114],"integrate":[115,250],"node":[120,146,195],"identify":[123],"more":[124,210,216,267],"reliable":[125,352],"candidate":[126,371],"miRNAs.":[128,257,342],"We":[129,187],"propose":[130],"a":[131,168,190,242,345],"non-negative":[132],"matrix":[133],"factorization":[134],"based":[135],"method,":[136],"FamCluRank,":[137,369],"in":[142,360],"heterogeneous":[143,192],"networks":[144],"One":[148],"novelties":[151],"FamCluRank":[153,247,343,383],"fully":[156],"utilize":[157],"these":[158,229],"two":[159,259],"oversighted":[160],"characteristics":[161],"focuses":[165],"particularly":[166],"deep":[169],"integration":[170,180],"cluster":[175,205,254],"In":[177],"particular,":[178],"was":[181],"achieved":[182],"by":[183,282],"three":[184],"different":[185],"means.":[186],"first":[188],"constructed":[189,241,281],"network":[193],"where":[197],"nodes":[200],"their":[202,358],"family":[203,252],"Second,":[207],"sharing":[209],"likely":[217],"also":[226,294,317],"related":[227],"clusters.":[232],"On":[233],"basis":[235],"biological":[238],"premise,":[239],"we":[240],"novel":[243],"model":[245,279],"deeply":[249],"Third,":[258],"tend":[262],"clusters,":[272],"vice":[274],"versa.":[275],"Hence,":[276],"FamCluRank's":[277,307],"concerning":[283,357],"not":[284,310],"possible":[287,296],"associations":[288],"but":[293,316],"disease-family":[297],"disease-cluster":[299],"Comparison":[301],"state-of-the-art":[304],"showed":[306],"superior":[308],"performance":[309],"well-characterized":[314],"new":[320,333],"ones.":[321],"Case":[322],"studies":[323,356],"colorectal":[325],"neoplasms,":[326,328,330],"pancreatic":[327],"lung":[329],"32":[332],"demonstrated":[335],"its":[336],"ability":[337],"potential":[340],"potent":[346],"prioritization":[347],"tool":[348],"screening":[350],"candidates":[353],"subsequent":[355],"involvement":[359],"pathogenesis":[362],"web":[366],"service":[367],"329":[375],"dataset":[379],"used":[380],"develop":[382],"available":[385],"at":[386],"http://www.famclurank.top.":[387]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":6}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
