{"id":"https://openalex.org/W2808129629","doi":"https://doi.org/10.1109/tcbb.2018.2849968","title":"Natural Language Processing for EHR-Based Computational Phenotyping","display_name":"Natural Language Processing for EHR-Based Computational Phenotyping","publication_year":2018,"publication_date":"2018-06-25","ids":{"openalex":"https://openalex.org/W2808129629","doi":"https://doi.org/10.1109/tcbb.2018.2849968","mag":"2808129629","pmid":"https://pubmed.ncbi.nlm.nih.gov/29994486"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2018.2849968","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2849968","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079301959","display_name":"Zexian Zeng","orcid":"https://orcid.org/0000-0002-3905-3244"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zexian Zeng","raw_affiliation_strings":["Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA"],"raw_orcid":"https://orcid.org/0000-0002-3905-3244","affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101921698","display_name":"Yu Deng","orcid":"https://orcid.org/0000-0003-2343-3688"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu Deng","raw_affiliation_strings":["Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100449155","display_name":"Xiaoyu Li","orcid":"https://orcid.org/0000-0002-4463-9944"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoyu Li","raw_affiliation_strings":["Department of Social and Behavioral Sciences, Harvard T. H. Chan School of Public Health, Harvard University, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Social and Behavioral Sciences, Harvard T. H. Chan School of Public Health, Harvard University, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023123863","display_name":"Tristan Naumann","orcid":"https://orcid.org/0000-0003-2150-1747"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tristan Naumann","raw_affiliation_strings":["Computer Science and Artificial Intelligence Lab, Massachusetts Institue of Technology, Cambridge, MA, USA"],"raw_orcid":"https://orcid.org/0000-0003-2150-1747","affiliations":[{"raw_affiliation_string":"Computer Science and Artificial Intelligence Lab, Massachusetts Institue of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100452550","display_name":"Yuan Luo","orcid":"https://orcid.org/0000-0003-0195-7456"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuan Luo","raw_affiliation_strings":["Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA"],"raw_orcid":"https://orcid.org/0000-0003-0195-7456","affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.6965,"has_fulltext":false,"cited_by_count":222,"citation_normalized_percentile":{"value":0.96205389,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"16","issue":"1","first_page":"139","last_page":"153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8733242750167847},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7181909680366516},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7161067128181458},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6911996603012085},{"id":"https://openalex.org/keywords/generalizability-theory","display_name":"Generalizability theory","score":0.5888336896896362},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.500194787979126},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.496692955493927},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.48713967204093933},{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.4634644091129303},{"id":"https://openalex.org/keywords/phenome","display_name":"Phenome","score":0.45582589507102966},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.42217355966567993},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.41211998462677},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37013179063796997},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21557238698005676}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8733242750167847},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7181909680366516},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7161067128181458},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6911996603012085},{"id":"https://openalex.org/C27158222","wikidata":"https://www.wikidata.org/wiki/Q5532422","display_name":"Generalizability theory","level":2,"score":0.5888336896896362},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.500194787979126},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.496692955493927},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.48713967204093933},{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.4634644091129303},{"id":"https://openalex.org/C7952369","wikidata":"https://www.wikidata.org/wiki/Q844116","display_name":"Phenome","level":4,"score":0.45582589507102966},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.42217355966567993},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.41211998462677},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37013179063796997},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21557238698005676},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2018.2849968","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2849968","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29994486","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29994486","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:5891145","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6388621","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1629986891","display_name":null,"funder_award_id":"R01 GM105688","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4685174425","display_name":null,"funder_award_id":"R21 LM012618","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8963286509","display_name":null,"funder_award_id":"T15 LM007092","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320308347","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94"},{"id":"https://openalex.org/F4320309369","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44"},{"id":"https://openalex.org/F4320309434","display_name":"University of Wisconsin-Madison","ror":"https://ror.org/01y2jtd41"},{"id":"https://openalex.org/F4320309475","display_name":"Northwestern University","ror":"https://ror.org/000e0be47"},{"id":"https://openalex.org/F4320310609","display_name":"Harvard T.H. Chan School of Public Health","ror":"https://ror.org/03vek6s52"},{"id":"https://openalex.org/F4320322392","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332649","display_name":"Feinberg School of Medicine","ror":"https://ror.org/000e0be47"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337999","display_name":"Intel Science and Technology Center for Big Data","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":243,"referenced_works":["https://openalex.org/W40385435","https://openalex.org/W45588658","https://openalex.org/W58804258","https://openalex.org/W102430494","https://openalex.org/W103785035","https://openalex.org/W134902690","https://openalex.org/W154056763","https://openalex.org/W184303886","https://openalex.org/W190945686","https://openalex.org/W337026903","https://openalex.org/W822806878","https://openalex.org/W848063403","https://openalex.org/W1081873870","https://openalex.org/W1135673779","https://openalex.org/W1175355699","https://openalex.org/W1482934285","https://openalex.org/W1487381889","https://openalex.org/W1511588645","https://openalex.org/W1512514171","https://openalex.org/W1516037026","https://openalex.org/W1523813553","https://openalex.org/W1581371422","https://openalex.org/W1593550344","https://openalex.org/W1602694398","https://openalex.org/W1614298861","https://openalex.org/W1687090725","https://openalex.org/W1750263989","https://openalex.org/W1759667598","https://openalex.org/W1791323137","https://openalex.org/W1808652302","https://openalex.org/W1814060816","https://openalex.org/W1817561967","https://openalex.org/W1829312150","https://openalex.org/W1832693441","https://openalex.org/W1873332500","https://openalex.org/W1927503436","https://openalex.org/W1939796399","https://openalex.org/W1966443646","https://openalex.org/W1969116741","https://openalex.org/W1969208427","https://openalex.org/W1973825638","https://openalex.org/W1974660612","https://openalex.org/W1975846642","https://openalex.org/W1976196376","https://openalex.org/W1984910136","https://openalex.org/W1987937467","https://openalex.org/W1989668072","https://openalex.org/W1989993068","https://openalex.org/W1993309715","https://openalex.org/W1994373518","https://openalex.org/W1995972830","https://openalex.org/W1996582212","https://openalex.org/W1997057722","https://openalex.org/W2007138823","https://openalex.org/W2010768718","https://openalex.org/W2012487908","https://openalex.org/W2023248478","https://openalex.org/W2024165284","https://openalex.org/W2025472120","https://openalex.org/W2029119894","https://openalex.org/W2030498706","https://openalex.org/W2032069669","https://openalex.org/W2033853342","https://openalex.org/W2034626816","https://openalex.org/W2036145773","https://openalex.org/W2042954874","https://openalex.org/W2044726711","https://openalex.org/W2045756303","https://openalex.org/W2051743300","https://openalex.org/W2053005868","https://openalex.org/W2053673723","https://openalex.org/W2054366842","https://openalex.org/W2057443209","https://openalex.org/W2057913811","https://openalex.org/W2060515712","https://openalex.org/W2077566950","https://openalex.org/W2085402348","https://openalex.org/W2085860988","https://openalex.org/W2092860916","https://openalex.org/W2092873805","https://openalex.org/W2097036913","https://openalex.org/W2097498916","https://openalex.org/W2098669604","https://openalex.org/W2099119910","https://openalex.org/W2100845478","https://openalex.org/W2101086247","https://openalex.org/W2103018059","https://openalex.org/W2103427999","https://openalex.org/W2104093114","https://openalex.org/W2105637130","https://openalex.org/W2106838048","https://openalex.org/W2106981782","https://openalex.org/W2111519552","https://openalex.org/W2113105800","https://openalex.org/W2114584591","https://openalex.org/W2114847203","https://openalex.org/W2115936765","https://openalex.org/W2120539430","https://openalex.org/W2120757740","https://openalex.org/W2121048111","https://openalex.org/W2121382432","https://openalex.org/W2121671360","https://openalex.org/W2121920862","https://openalex.org/W2122087674","https://openalex.org/W2122111042","https://openalex.org/W2122836712","https://openalex.org/W2123556395","https://openalex.org/W2124996938","https://openalex.org/W2125726375","https://openalex.org/W2131668595","https://openalex.org/W2132744551","https://openalex.org/W2132927459","https://openalex.org/W2135496322","https://openalex.org/W2136922672","https://openalex.org/W2137539029","https://openalex.org/W2138062714","https://openalex.org/W2138162199","https://openalex.org/W2138857742","https://openalex.org/W2145522203","https://openalex.org/W2147880316","https://openalex.org/W2148143831","https://openalex.org/W2148395543","https://openalex.org/W2149684865","https://openalex.org/W2150092391","https://openalex.org/W2151636613","https://openalex.org/W2153393891","https://openalex.org/W2153590513","https://openalex.org/W2154048976","https://openalex.org/W2158899491","https://openalex.org/W2159011576","https://openalex.org/W2159583324","https://openalex.org/W2159636537","https://openalex.org/W2163738899","https://openalex.org/W2165067209","https://openalex.org/W2165456953","https://openalex.org/W2166627015","https://openalex.org/W2167032822","https://openalex.org/W2168041406","https://openalex.org/W2168905447","https://openalex.org/W2169704124","https://openalex.org/W2169767637","https://openalex.org/W2169818249","https://openalex.org/W2170654002","https://openalex.org/W2173884055","https://openalex.org/W2182748314","https://openalex.org/W2186845332","https://openalex.org/W2238755921","https://openalex.org/W2240668419","https://openalex.org/W2250575108","https://openalex.org/W2251143283","https://openalex.org/W2251599843","https://openalex.org/W2252217261","https://openalex.org/W2252979829","https://openalex.org/W2277421311","https://openalex.org/W2290604269","https://openalex.org/W2294991855","https://openalex.org/W2302696457","https://openalex.org/W2337688041","https://openalex.org/W2339665724","https://openalex.org/W2367952659","https://openalex.org/W2398489001","https://openalex.org/W2404901863","https://openalex.org/W2405013394","https://openalex.org/W2463629690","https://openalex.org/W2468477102","https://openalex.org/W2469314752","https://openalex.org/W2488984245","https://openalex.org/W2504897554","https://openalex.org/W2522032327","https://openalex.org/W2530979053","https://openalex.org/W2562568662","https://openalex.org/W2580957850","https://openalex.org/W2592420893","https://openalex.org/W2593739814","https://openalex.org/W2601978497","https://openalex.org/W2605281151","https://openalex.org/W2606833494","https://openalex.org/W2610332124","https://openalex.org/W2618471285","https://openalex.org/W2620700890","https://openalex.org/W2625625371","https://openalex.org/W2651948199","https://openalex.org/W2726375170","https://openalex.org/W2738242267","https://openalex.org/W2753068549","https://openalex.org/W2771817472","https://openalex.org/W2786235347","https://openalex.org/W2950562763","https://openalex.org/W2952230511","https://openalex.org/W2963078493","https://openalex.org/W2963374133","https://openalex.org/W2964217331","https://openalex.org/W3104523752","https://openalex.org/W4231376000","https://openalex.org/W4249076806","https://openalex.org/W4294031299","https://openalex.org/W4294385753","https://openalex.org/W4295888145","https://openalex.org/W6601855197","https://openalex.org/W6602395363","https://openalex.org/W6604160763","https://openalex.org/W6604191316","https://openalex.org/W6605578676","https://openalex.org/W6606262174","https://openalex.org/W6607485555","https://openalex.org/W6607751615","https://openalex.org/W6611564832","https://openalex.org/W6623178873","https://openalex.org/W6623644288","https://openalex.org/W6627460192","https://openalex.org/W6627826967","https://openalex.org/W6628806270","https://openalex.org/W6630463118","https://openalex.org/W6630945507","https://openalex.org/W6631184174","https://openalex.org/W6636510571","https://openalex.org/W6637245718","https://openalex.org/W6637751119","https://openalex.org/W6638567083","https://openalex.org/W6638776187","https://openalex.org/W6639175750","https://openalex.org/W6671769285","https://openalex.org/W6675252645","https://openalex.org/W6679609430","https://openalex.org/W6680300913","https://openalex.org/W6680930200","https://openalex.org/W6682082992","https://openalex.org/W6682555286","https://openalex.org/W6683738474","https://openalex.org/W6684608122","https://openalex.org/W6690045299","https://openalex.org/W6691645485","https://openalex.org/W6694937651","https://openalex.org/W6696993608","https://openalex.org/W6697810654","https://openalex.org/W6712207982","https://openalex.org/W6713413269","https://openalex.org/W6730977118","https://openalex.org/W6736239877","https://openalex.org/W6736817290","https://openalex.org/W6738495444","https://openalex.org/W6739607320","https://openalex.org/W6747555915"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W4390569940","https://openalex.org/W2888392564","https://openalex.org/W4361193272","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W2806259446","https://openalex.org/W2963326959","https://openalex.org/W2118717649","https://openalex.org/W4378220270"],"abstract_inverted_index":{"This":[0],"article":[1],"reviews":[2],"recent":[3],"advances":[4],"in":[5,57,156,195],"applying":[6],"natural":[7],"language":[8],"processing":[9],"(NLP)":[10],"to":[11,95,140],"Electronic":[12],"Health":[13],"Records":[14],"(EHRs)":[15],"for":[16,63,131,137,179],"computational":[17,20,64,181],"phenotyping.":[18,65],"NLP-based":[19,180],"phenotyping":[21],"has":[22,54],"numerous":[23],"applications":[24],"including":[25,183],"diagnosis":[26],"categorization,":[27],"novel":[28,142],"phenotype":[29],"discovery,":[30],"clinical":[31,196],"trial":[32],"screening,":[33],"pharmacogenomics,":[34],"drug-drug":[35],"interaction":[36],"(DDI),":[37],"and":[38,48,60,73,85,113,120,134,152,176,187,189],"adverse":[39],"drug":[40],"event":[41],"(ADE)":[42],"detection,":[43],"as":[44,46],"well":[45],"genome-wide":[47],"phenome-wide":[49],"association":[50],"studies.":[51],"Significant":[52],"progress":[53],"been":[55,102],"made":[56],"algorithm":[58],"development":[59],"resource":[61],"construction":[62,82],"Among":[66],"the":[67,81,128,135],"surveyed":[68],"methods,":[69],"well-designed":[70],"keyword":[71,84],"search":[72],"rule-based":[74],"systems":[75],"often":[76],"achieve":[77],"good":[78],"performance.":[79,159],"However,":[80],"of":[83,108,169,192],"rule":[86],"lists":[87],"requires":[88],"significant":[89],"manual":[90],"effort,":[91],"which":[92],"is":[93,163],"difficult":[94],"scale.":[96],"Supervised":[97],"machine":[98],"learning":[99,119,122],"models":[100],"have":[101,123,148,153],"favored":[103,130],"because":[104],"they":[105],"are":[106],"capable":[107],"acquiring":[109],"both":[110],"classification":[111],"patterns":[112],"structures":[114],"from":[115],"data.":[116],"Recently,":[117],"deep":[118],"unsupervised":[121],"received":[124],"growing":[125],"attention,":[126],"with":[127],"former":[129],"its":[132,138],"performance":[133,162],"latter":[136],"ability":[139],"find":[141],"phenotypes.":[143],"Integrating":[144],"heterogeneous":[145],"data":[146],"sources":[147],"become":[149],"increasingly":[150],"important":[151],"shown":[154],"promise":[155],"improving":[157],"model":[158,185],"Often,":[160],"better":[161,184],"achieved":[164],"by":[165],"combining":[166],"multiple":[167],"modalities":[168],"information.":[170],"Despite":[171],"these":[172],"many":[173],"advances,":[174],"challenges":[175],"opportunities":[177],"remain":[178],"phenotyping,":[182],"interpretability":[186],"generalizability,":[188],"proper":[190],"characterization":[191],"feature":[193],"relations":[194],"narratives.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":19},{"year":2025,"cited_by_count":27},{"year":2024,"cited_by_count":41},{"year":2023,"cited_by_count":41},{"year":2022,"cited_by_count":37},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":5}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
