{"id":"https://openalex.org/W2803684511","doi":"https://doi.org/10.1109/tcbb.2018.2838667","title":"Exploring the Robustness of the Parsimonious Reconciliation Method in Host-Symbiont Cophylogeny","display_name":"Exploring the Robustness of the Parsimonious Reconciliation Method in Host-Symbiont Cophylogeny","publication_year":2018,"publication_date":"2018-05-21","ids":{"openalex":"https://openalex.org/W2803684511","doi":"https://doi.org/10.1109/tcbb.2018.2838667","mag":"2803684511","pmid":"https://pubmed.ncbi.nlm.nih.gov/29993554"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2018.2838667","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2838667","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/hal-01842451","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011420704","display_name":"Laura Urbini","orcid":"https://orcid.org/0000-0002-2880-2932"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laura Urbini","raw_affiliation_strings":["Universit\u00e9 de Lyon, Lyon","ERABLE - Equipe de recherche europ\u00e9enne en algorithmique et biologie formelle et exp\u00e9rimentale (Universit\u00e9 Claude Bernard (Lyon 1), \r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"raw_orcid":"https://orcid.org/0000-0002-2880-2932","affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"ERABLE - Equipe de recherche europ\u00e9enne en algorithmique et biologie formelle et exp\u00e9rimentale (Universit\u00e9 Claude Bernard (Lyon 1), \r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027309652","display_name":"Blerina Sinaimeri","orcid":"https://orcid.org/0000-0002-9797-7592"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Blerina Sinaimeri","raw_affiliation_strings":["Universit\u00e9 de Lyon, Lyon","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","ERABLE - Equipe de recherche europ\u00e9enne en algorithmique et biologie formelle et exp\u00e9rimentale (Universit\u00e9 Claude Bernard (Lyon 1), \r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)"],"raw_orcid":"https://orcid.org/0000-0002-9797-7592","affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]},{"raw_affiliation_string":"ERABLE - Equipe de recherche europ\u00e9enne en algorithmique et biologie formelle et exp\u00e9rimentale (Universit\u00e9 Claude Bernard (Lyon 1), \r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082187550","display_name":"Catherine Matias","orcid":"https://orcid.org/0000-0001-6665-2421"},"institutions":[{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210147464","display_name":"Laboratoire de Probabilit\u00e9s et Mod\u00e8les Al\u00e9atoires","ror":"https://ror.org/04hjc7403","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4210141950","https://openalex.org/I4210147464"]},{"id":"https://openalex.org/I4387155306","display_name":"Laboratoire de Probabilit\u00e9s, Statistique et Mod\u00e9lisation","ror":"https://ror.org/02vnd0e65","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I4387155306"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Catherine Matias","raw_affiliation_strings":["Sorbonne Universit\u00e9, Universit\u00e9 Paris Diderot, Paris, France","LPSM (UMR_8001) - Laboratoire de Probabilit\u00e9s, Statistique et Mod\u00e9lisation (Campus Jussieu Tour 16-26, 1er \u00e9tage 4, Place Jussieu 75005 Paris / \r\n\r\nB\u00e2timent Sophie Germain 5\u00e8me \u00e9tage Avenue de France 75013 Paris - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, Universit\u00e9 Paris Diderot, Paris, France","institution_ids":["https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I39804081"]},{"raw_affiliation_string":"LPSM (UMR_8001) - Laboratoire de Probabilit\u00e9s, Statistique et Mod\u00e9lisation (Campus Jussieu Tour 16-26, 1er \u00e9tage 4, Place Jussieu 75005 Paris / \r\n\r\nB\u00e2timent Sophie Germain 5\u00e8me \u00e9tage Avenue de France 75013 Paris - France)","institution_ids":["https://openalex.org/I4210147464","https://openalex.org/I4387155306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044540605","display_name":"Marie\u2010France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-France Sagot","raw_affiliation_strings":["Universit\u00e9 de Lyon, Lyon","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","ERABLE - Equipe de recherche europ\u00e9enne en algorithmique et biologie formelle et exp\u00e9rimentale (Universit\u00e9 Claude Bernard (Lyon 1), \r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]},{"raw_affiliation_string":"ERABLE - Equipe de recherche europ\u00e9enne en algorithmique et biologie formelle et exp\u00e9rimentale (Universit\u00e9 Claude Bernard (Lyon 1), \r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)","institution_ids":["https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7798,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.79928315,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"16","issue":"3","first_page":"738","last_page":"748"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.8738698959350586},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7610020637512207},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6479735374450684},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5733574032783508},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4141885042190552},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38197392225265503},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.340699166059494},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17002660036087036},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.13468515872955322},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10023918747901917}],"concepts":[{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.8738698959350586},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7610020637512207},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6479735374450684},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5733574032783508},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4141885042190552},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38197392225265503},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.340699166059494},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17002660036087036},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.13468515872955322},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10023918747901917},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1109/tcbb.2018.2838667","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2838667","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29993554","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29993554","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01842451v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01842451","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, pp.1-11. &#x27E8;10.1109/TCBB.2018.2838667&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:iris.luiss.it:11385/202495","is_oa":false,"landing_page_url":"http://hdl.handle.net/11385/202495","pdf_url":null,"source":{"id":"https://openalex.org/S4377196446","display_name":"IRIS - Institutional Research Information System (Libera Universit\u00e0 Internazionale degli Studi Sociali Guido Carli)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56441308","host_organization_name":"Libera Universit\u00e0 Internazionale degli Studi Sociali Guido Carli","host_organization_lineage":["https://openalex.org/I56441308"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-01842451v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01842451","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, pp.1-11. &#x27E8;10.1109/TCBB.2018.2838667&#x27E9;","raw_type":"Journal articles"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W16471194","https://openalex.org/W60927400","https://openalex.org/W1481919898","https://openalex.org/W1487781539","https://openalex.org/W1547195097","https://openalex.org/W1570143449","https://openalex.org/W1969650498","https://openalex.org/W1976531961","https://openalex.org/W1986968252","https://openalex.org/W1996156981","https://openalex.org/W2008252897","https://openalex.org/W2013226836","https://openalex.org/W2032186263","https://openalex.org/W2034492097","https://openalex.org/W2043752265","https://openalex.org/W2053851102","https://openalex.org/W2076385002","https://openalex.org/W2091707359","https://openalex.org/W2094002760","https://openalex.org/W2097725880","https://openalex.org/W2102109244","https://openalex.org/W2107713540","https://openalex.org/W2110192501","https://openalex.org/W2110569272","https://openalex.org/W2112755610","https://openalex.org/W2116433762","https://openalex.org/W2117000771","https://openalex.org/W2122925173","https://openalex.org/W2125444885","https://openalex.org/W2128520958","https://openalex.org/W2130719497","https://openalex.org/W2132318428","https://openalex.org/W2132553324","https://openalex.org/W2134255028","https://openalex.org/W2134771735","https://openalex.org/W2138140955","https://openalex.org/W2143776657","https://openalex.org/W2144345157","https://openalex.org/W2144454528","https://openalex.org/W2144619586","https://openalex.org/W2146451778","https://openalex.org/W2148740146","https://openalex.org/W2157877663","https://openalex.org/W2166248950","https://openalex.org/W2169802620","https://openalex.org/W2195960804","https://openalex.org/W2264966865","https://openalex.org/W2287141830","https://openalex.org/W2463957383","https://openalex.org/W2962870524","https://openalex.org/W4206408300","https://openalex.org/W4295336315","https://openalex.org/W4394587163","https://openalex.org/W4394741625","https://openalex.org/W6634101169","https://openalex.org/W6677017098","https://openalex.org/W6698378080"],"related_works":["https://openalex.org/W2117112636","https://openalex.org/W2001981265","https://openalex.org/W2770593030","https://openalex.org/W3154990682","https://openalex.org/W2560201613","https://openalex.org/W2171975302","https://openalex.org/W2022352247","https://openalex.org/W2377538627","https://openalex.org/W2107220315","https://openalex.org/W1589637664"],"abstract_inverted_index":{"The":[0,25,64,75],"aim":[1],"of":[2,10,22,31,73,79,90,97,127,131,134],"this":[3,104],"paper":[4],"is":[5,46,57],"to":[6,35,60,83,102,124],"explore":[7],"the":[8,11,23,39,50,53,71,80,91,95,115],"robustness":[9,105],"parsimonious":[12],"host-symbiont":[13,116],"tree":[14,54,82,128],"reconciliation":[15,55],"method":[16],"under":[17],"editing":[18,26],"or":[19],"small":[20],"perturbations":[21,76],"input.":[24],"involves":[27],"making":[28],"different":[29],"choices":[30],"unique":[32],"symbiont":[33,81],"mapping":[34],"a":[36,86,109,122],"host":[37],"in":[38,94],"case":[40,96],"where":[41],"multiple":[42],"associations":[43],"exist.":[44],"This":[45],"made":[47],"necessary":[48],"by":[49,136],"fact":[51],"that":[52],"model":[56],"currently":[58],"unable":[59],"handle":[61],"such":[62],"associations.":[63],"analysis":[65],"performed":[66],"could":[67],"however":[68],"also":[69],"address":[70],"problem":[72],"errors.":[74],"are":[77,133],"re-rootings":[78],"deal":[84],"with":[85],"possibly":[87],"wrong":[88],"placement":[89],"root":[92],"specially":[93],"fast-evolving":[98],"species.":[99],"In":[100],"order":[101],"do":[103],"analysis,":[106],"we":[107],"introduce":[108],"simulation":[110],"scheme":[111],"specifically":[112],"designed":[113],"for":[114],"cophylogeny":[117],"context,":[118],"as":[119,121],"well":[120],"measure":[123],"compare":[125],"sets":[126],"reconciliations,":[129],"both":[130],"which":[132],"interest":[135],"themselves.":[137]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
