{"id":"https://openalex.org/W2799463745","doi":"https://doi.org/10.1109/tcbb.2018.2832061","title":"Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs","display_name":"Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs","publication_year":2018,"publication_date":"2018-05-01","ids":{"openalex":"https://openalex.org/W2799463745","doi":"https://doi.org/10.1109/tcbb.2018.2832061","mag":"2799463745","pmid":"https://pubmed.ncbi.nlm.nih.gov/29994050"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2018.2832061","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2832061","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069087832","display_name":"Yuhei Nishiyama","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuhei Nishiyama","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084691948","display_name":"Aleksandar Shurbevski","orcid":"https://orcid.org/0000-0001-9224-6929"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Aleksandar Shurbevski","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto, Japan"],"raw_orcid":"https://orcid.org/0000-0001-9224-6929","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073738140","display_name":"Hiroshi Nagamochi","orcid":"https://orcid.org/0000-0002-8332-1517"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Nagamochi","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016330265","display_name":"Tatsuya Akutsu","orcid":"https://orcid.org/0000-0001-9763-797X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuya Akutsu","raw_affiliation_strings":["Bionformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan"],"raw_orcid":"https://orcid.org/0000-0001-9763-797X","affiliations":[{"raw_affiliation_string":"Bionformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.07908628,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"16","issue":"1","first_page":"77","last_page":"90"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13297","display_name":"History and advancements in chemistry","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bounding-overwatch","display_name":"Bounding overwatch","score":0.6881911754608154},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5621659159660339},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4944272041320801},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4749103784561157},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3722531199455261},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3072461783885956},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.2933819890022278},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1427534818649292}],"concepts":[{"id":"https://openalex.org/C63584917","wikidata":"https://www.wikidata.org/wiki/Q333286","display_name":"Bounding overwatch","level":2,"score":0.6881911754608154},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5621659159660339},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4944272041320801},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4749103784561157},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3722531199455261},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3072461783885956},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.2933819890022278},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1427534818649292}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2018.2832061","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2832061","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29994050","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29994050","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G146149645","display_name":"Design of Algorithms for Discrete Optimization Based on Graph-Theoretical Methods","funder_award_id":"17K00014","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3503306456","display_name":null,"funder_award_id":"Kaken 26240034","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5756352865","display_name":"Analysis and Applications of Discrete Preimage Problems","funder_award_id":"18H04113","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1217745524","https://openalex.org/W1555889346","https://openalex.org/W1568341987","https://openalex.org/W1835509607","https://openalex.org/W1972094496","https://openalex.org/W1979946479","https://openalex.org/W1987850470","https://openalex.org/W2032179189","https://openalex.org/W2041135206","https://openalex.org/W2053080554","https://openalex.org/W2069858527","https://openalex.org/W2070643689","https://openalex.org/W2073067110","https://openalex.org/W2077654283","https://openalex.org/W2085421421","https://openalex.org/W2086457680","https://openalex.org/W2116296021","https://openalex.org/W2120176413","https://openalex.org/W2132773116","https://openalex.org/W2133756602","https://openalex.org/W2150756751","https://openalex.org/W2160000945","https://openalex.org/W2161723275","https://openalex.org/W2171437346","https://openalex.org/W2206840988","https://openalex.org/W2216385431","https://openalex.org/W2337910325","https://openalex.org/W2484547531","https://openalex.org/W2522872675","https://openalex.org/W2951797024","https://openalex.org/W2952616760","https://openalex.org/W6627978968","https://openalex.org/W6638258969","https://openalex.org/W6679697903","https://openalex.org/W6703714771","https://openalex.org/W6722569476"],"related_works":["https://openalex.org/W1979597421","https://openalex.org/W2007980826","https://openalex.org/W4245490552","https://openalex.org/W2061531152","https://openalex.org/W3002753104","https://openalex.org/W2077600819","https://openalex.org/W1587224694","https://openalex.org/W2042127053","https://openalex.org/W2142036596","https://openalex.org/W4238204885"],"abstract_inverted_index":{"Enumerating":[0],"chemical":[1,28,40,81,90,194],"compounds":[2],"with":[3,14,105,196],"given":[4],"structural":[5],"properties":[6],"plays":[7],"an":[8],"important":[9],"role":[10],"in":[11,53,62,157],"structure":[12],"elucidation,":[13],"applications":[15],"such":[16,172],"as":[17,85],"drug":[18],"design.":[19],"We":[20,163,185],"focus":[21],"on":[22,36,57,96],"the":[23,58,77,132,152,158,182],"problem":[24],"of":[25,50,99,110,125,145,193],"enumerating":[26],"tree-like":[27],"graphs":[29,41,82,195],"specified":[30,107],"by":[31,117],"upper":[32],"and":[33,44,170],"lower":[34],"bounds":[35],"feature":[37,46],"vectors,":[38],"where":[39],"represent":[42],"compounds,":[43],"a":[45,54,67,97,106,122,142,146,165],"vector":[47],"characterizes":[48],"frequencies":[49],"finite":[51],"paths":[52],"graph.":[55],"Building":[56],"branch-and-bound":[59],"algorithm":[60,93,133],"proposed":[61],"earlier":[63],"work,":[64],"we":[65,129],"propose":[66],"new":[68],"bounding":[69],"procedure,":[70],"called":[71],"Resource":[72,178],"Cut,":[73],"to":[74,141,168,189,198],"speed":[75],"up":[76,197],"enumeration":[78],"process.":[79],"Tree-like":[80],"are":[83,161],"modeled":[84],"vertex-colored":[86],"trees,":[87],"colors":[88],"representing":[89],"elements.":[91],"The":[92],"is":[94,115],"based":[95],"scheme":[98],"generating":[100],"each":[101],"unique":[102,143],"colored":[103,113,127,147,155],"tree":[104,114,148],"number":[108],"n":[109,126],"vertices.":[111,120],"A":[112],"constructed":[116],"repeatedly":[118],"appending":[119],"Given":[121],"set":[123,159],"R":[124,160],"vertices,":[128],"found":[130],"that":[131,137,177],"often":[134],"constructs":[135],"trees":[136],"cannot":[138],"be":[139],"extended":[140],"representation":[144],"no":[149],"matter":[150],"how":[151],"remaining":[153],"unused":[154],"vertices":[156,200],"appended.":[162],"derive":[164],"mathematical":[166],"condition":[167],"detect":[169],"discard":[171],"trees.":[173],"Experimental":[174],"results":[175],"show":[176],"Cut":[179],"significantly":[180],"reduces":[181],"search":[183],"space.":[184],"have":[186],"been":[187],"able":[188],"obtain":[190],"exact":[191],"numbers":[192],"17":[199],"excluding":[201],"hydrogen":[202],"atoms.":[203]},"counts_by_year":[{"year":2023,"cited_by_count":2}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
