{"id":"https://openalex.org/W2795302034","doi":"https://doi.org/10.1109/tcbb.2018.2820695","title":"Biomarker Identification for Cancer Disease Using Biclustering Approach: An Empirical Study","display_name":"Biomarker Identification for Cancer Disease Using Biclustering Approach: An Empirical Study","publication_year":2018,"publication_date":"2018-03-29","ids":{"openalex":"https://openalex.org/W2795302034","doi":"https://doi.org/10.1109/tcbb.2018.2820695","mag":"2795302034"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2018.2820695","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2820695","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038183768","display_name":"Koyel Mandal","orcid":"https://orcid.org/0000-0003-0453-7828"},"institutions":[{"id":"https://openalex.org/I126601174","display_name":"Tezpur University","ror":"https://ror.org/005x56091","country_code":"IN","type":"education","lineage":["https://openalex.org/I126601174"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Koyel Mandal","raw_affiliation_strings":["Department of Computer Science and Engineering, Tezpur University, Sonitpur, Assam, India"],"raw_orcid":"https://orcid.org/0000-0003-0453-7828","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Tezpur University, Sonitpur, Assam, India","institution_ids":["https://openalex.org/I126601174"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091529265","display_name":"Rosy Sarmah","orcid":"https://orcid.org/0000-0003-2564-426X"},"institutions":[{"id":"https://openalex.org/I126601174","display_name":"Tezpur University","ror":"https://ror.org/005x56091","country_code":"IN","type":"education","lineage":["https://openalex.org/I126601174"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rosy Sarmah","raw_affiliation_strings":["Department of Computer Science and Engineering, Tezpur University, Sonitpur, Assam, India"],"raw_orcid":"https://orcid.org/0000-0003-2564-426X","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Tezpur University, Sonitpur, Assam, India","institution_ids":["https://openalex.org/I126601174"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071372272","display_name":"Dhruba K. Bhattacharyya","orcid":"https://orcid.org/0000-0002-9506-7640"},"institutions":[{"id":"https://openalex.org/I126601174","display_name":"Tezpur University","ror":"https://ror.org/005x56091","country_code":"IN","type":"education","lineage":["https://openalex.org/I126601174"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Dhruba Kumar Bhattacharyya","raw_affiliation_strings":["Department of Computer Science and Engineering, Tezpur University, Sonitpur, Assam, India"],"raw_orcid":"https://orcid.org/0000-0002-9506-7640","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Tezpur University, Sonitpur, Assam, India","institution_ids":["https://openalex.org/I126601174"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7423,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.69896808,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"16","issue":"2","first_page":"490","last_page":"509"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.75411057472229},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.7294776439666748},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.6542764902114868},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.6281265020370483},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.6030043959617615},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.5532535314559937},{"id":"https://openalex.org/keywords/cancer-biomarkers","display_name":"Cancer biomarkers","score":0.503419816493988},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.4958816468715668},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4690314531326294},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.4625145494937897},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39832302927970886},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.36108267307281494},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.32965531945228577},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.29400530457496643},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.25926685333251953},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.22692400217056274},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20791542530059814},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.20431196689605713},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15834000706672668},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11863595247268677},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.057131290435791016}],"concepts":[{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.75411057472229},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.7294776439666748},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.6542764902114868},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.6281265020370483},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.6030043959617615},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.5532535314559937},{"id":"https://openalex.org/C2777002142","wikidata":"https://www.wikidata.org/wiki/Q5031432","display_name":"Cancer biomarkers","level":3,"score":0.503419816493988},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.4958816468715668},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4690314531326294},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.4625145494937897},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39832302927970886},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.36108267307281494},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.32965531945228577},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29400530457496643},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.25926685333251953},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.22692400217056274},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20791542530059814},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.20431196689605713},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15834000706672668},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11863595247268677},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.057131290435791016},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.0},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tcbb.2018.2820695","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2820695","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5899999737739563,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":134,"referenced_works":["https://openalex.org/W30846217","https://openalex.org/W45534775","https://openalex.org/W753601896","https://openalex.org/W1142599858","https://openalex.org/W1493217831","https://openalex.org/W1526090859","https://openalex.org/W1528144985","https://openalex.org/W1528850234","https://openalex.org/W1590422503","https://openalex.org/W1593486402","https://openalex.org/W1609044025","https://openalex.org/W1673310716","https://openalex.org/W1727252716","https://openalex.org/W1769049279","https://openalex.org/W1841961408","https://openalex.org/W1891744697","https://openalex.org/W1967053372","https://openalex.org/W1972910464","https://openalex.org/W1979978607","https://openalex.org/W1982621401","https://openalex.org/W1984183317","https://openalex.org/W1993445335","https://openalex.org/W1994448767","https://openalex.org/W2001533493","https://openalex.org/W2004529542","https://openalex.org/W2005737301","https://openalex.org/W2008459449","https://openalex.org/W2011794262","https://openalex.org/W2016493165","https://openalex.org/W2021993511","https://openalex.org/W2022200351","https://openalex.org/W2023416945","https://openalex.org/W2023635745","https://openalex.org/W2023971898","https://openalex.org/W2045298789","https://openalex.org/W2048867608","https://openalex.org/W2050474043","https://openalex.org/W2055849881","https://openalex.org/W2057514122","https://openalex.org/W2058849889","https://openalex.org/W2064787891","https://openalex.org/W2065802121","https://openalex.org/W2071086298","https://openalex.org/W2084017738","https://openalex.org/W2087684630","https://openalex.org/W2091302506","https://openalex.org/W2091807570","https://openalex.org/W2091807919","https://openalex.org/W2097413644","https://openalex.org/W2098365623","https://openalex.org/W2100837786","https://openalex.org/W2105883975","https://openalex.org/W2108020239","https://openalex.org/W2109153921","https://openalex.org/W2109174028","https://openalex.org/W2110838720","https://openalex.org/W2112279992","https://openalex.org/W2112668677","https://openalex.org/W2114813480","https://openalex.org/W2115831762","https://openalex.org/W2115875363","https://openalex.org/W2117730787","https://openalex.org/W2118816784","https://openalex.org/W2119282901","https://openalex.org/W2120895400","https://openalex.org/W2121936281","https://openalex.org/W2124235814","https://openalex.org/W2125943945","https://openalex.org/W2127218421","https://openalex.org/W2127284416","https://openalex.org/W2130095365","https://openalex.org/W2130365699","https://openalex.org/W2135187880","https://openalex.org/W2136097953","https://openalex.org/W2136107412","https://openalex.org/W2137167578","https://openalex.org/W2137476312","https://openalex.org/W2137540340","https://openalex.org/W2140469676","https://openalex.org/W2141012957","https://openalex.org/W2142450026","https://openalex.org/W2143274936","https://openalex.org/W2143683461","https://openalex.org/W2144544802","https://openalex.org/W2148216605","https://openalex.org/W2148995578","https://openalex.org/W2150926065","https://openalex.org/W2150930396","https://openalex.org/W2151763757","https://openalex.org/W2158135353","https://openalex.org/W2159400887","https://openalex.org/W2159839388","https://openalex.org/W2161488150","https://openalex.org/W2164594706","https://openalex.org/W2165298438","https://openalex.org/W2166542841","https://openalex.org/W2166938936","https://openalex.org/W2169387435","https://openalex.org/W2170584976","https://openalex.org/W2170615026","https://openalex.org/W2195533877","https://openalex.org/W2254489970","https://openalex.org/W2270709317","https://openalex.org/W2273593963","https://openalex.org/W2292474197","https://openalex.org/W2328967169","https://openalex.org/W2343280592","https://openalex.org/W2465282683","https://openalex.org/W2485297083","https://openalex.org/W2556591296","https://openalex.org/W2559479590","https://openalex.org/W2582169927","https://openalex.org/W2585815858","https://openalex.org/W2601643916","https://openalex.org/W2611831635","https://openalex.org/W4210297234","https://openalex.org/W4234964068","https://openalex.org/W4246697467","https://openalex.org/W4251917192","https://openalex.org/W4294107304","https://openalex.org/W4294216483","https://openalex.org/W4388252848","https://openalex.org/W4399583988","https://openalex.org/W6629329278","https://openalex.org/W6635743399","https://openalex.org/W6637131181","https://openalex.org/W6637940469","https://openalex.org/W6667016274","https://openalex.org/W6678361662","https://openalex.org/W6678914141","https://openalex.org/W6680568974","https://openalex.org/W6680875585","https://openalex.org/W6732873731","https://openalex.org/W6834023063"],"related_works":["https://openalex.org/W112583468","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W4298030740","https://openalex.org/W2108949684","https://openalex.org/W4246773350","https://openalex.org/W1965976436","https://openalex.org/W2012655824","https://openalex.org/W3177170977","https://openalex.org/W2326771431"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"an":[3],"exhaustive":[4],"empirical":[5],"study":[6],"to":[7,52,170],"identify":[8],"biomarkers":[9,54,71,111,150,183],"using":[10,72],"two":[11],"approaches:":[12],"frequency-based":[13,73,156,185],"and":[14,21,39,48,95,131,146,187],"network-based,":[15],"over":[16,143],"17":[17],"different":[18,23],"biclustering":[19,31,176],"algorithms":[20,43],"six":[22],"cancer":[24,135,166,182],"expression":[25,168],"datasets.":[26],"To":[27],"systematically":[28],"analyze":[29],"the":[30,101,172,175,193],"algorithms,":[32],"we":[33,104],"perform":[34],"enrichment":[35],"analysis,":[36],"subtype":[37],"identification,":[38],"biomarker":[40],"identification.":[41],"Biclustering":[42],"such":[44],"as":[45],"C&C,":[46],"SAMBA,":[47],"Plaid":[49],"are":[50,79,115],"useful":[51],"detect":[53,65,105,147,179],"by":[55,154,184,189],"both":[56,155],"approaches":[57],"for":[58,80,84,88,92,97,192],"all":[59],"datasets":[60],"except":[61],"prostate":[62,98,134],"cancer.":[63,99],"We":[64,137,160,178],"a":[66,106],"total":[67,107],"of":[68,76,108,112,174],"103":[69],"gene":[70,110,149],"method":[74,186,191],"out":[75],"which":[77,113],"19":[78,180],"blood":[81,117],"cancer,":[82,86,90,94,118,122,126,130],"36":[83],"lung":[85,121],"25":[87],"colon":[89,125],"13":[91],"multi-tissue":[93,129],"10":[96],"Using":[100],"network-based":[102,158,190],"approach,":[103],"41":[109],"15":[114],"from":[116,120,124,128,133],"12":[119],"6":[123],"7":[127],"1":[132],"dataset.":[136,195],"further":[138],"extend":[139],"our":[140,162],"network":[141],"analysis":[142],"some":[144,148],"biclusters":[145],"not":[151],"detected":[152],"earlier":[153],"or":[157],"approach.":[159],"expand":[161],"work":[163],"on":[164],"breast":[165,181],"miRNA":[167,194],"data":[169],"evaluate":[171],"performance":[173],"algorithms.":[177],"5":[188]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2018-04-06T00:00:00"}
