{"id":"https://openalex.org/W2790563985","doi":"https://doi.org/10.1109/tcbb.2018.2814039","title":"Secure Wavelet Matrix: Alphabet-Friendly Privacy-Preserving String Search for Bioinformatics","display_name":"Secure Wavelet Matrix: Alphabet-Friendly Privacy-Preserving String Search for Bioinformatics","publication_year":2018,"publication_date":"2018-03-08","ids":{"openalex":"https://openalex.org/W2790563985","doi":"https://doi.org/10.1109/tcbb.2018.2814039","mag":"2790563985","pmid":"https://pubmed.ncbi.nlm.nih.gov/29994070"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2018.2814039","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2814039","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/8863041/08310013.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/8857/8863041/08310013.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068477974","display_name":"Hiroki Sudo","orcid":"https://orcid.org/0000-0003-2222-3371"},"institutions":[{"id":"https://openalex.org/I150744194","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83","country_code":"JP","type":"education","lineage":["https://openalex.org/I150744194"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroki Sudo","raw_affiliation_strings":["AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0003-2222-3371","affiliations":[{"raw_affiliation_string":"AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035975953","display_name":"Masanobu Jimbo","orcid":"https://orcid.org/0000-0002-7526-7434"},"institutions":[{"id":"https://openalex.org/I150744194","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83","country_code":"JP","type":"education","lineage":["https://openalex.org/I150744194"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masanobu Jimbo","raw_affiliation_strings":["AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0002-7526-7434","affiliations":[{"raw_affiliation_string":"AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002435737","display_name":"Koji Nuida","orcid":"https://orcid.org/0000-0001-8259-9958"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Koji Nuida","raw_affiliation_strings":["Information Technology Research Institute (ITRI), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0001-8259-9958","affiliations":[{"raw_affiliation_string":"Information Technology Research Institute (ITRI), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043657069","display_name":"Kana Shimizu","orcid":"https://orcid.org/0000-0001-6452-9091"},"institutions":[{"id":"https://openalex.org/I150744194","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83","country_code":"JP","type":"education","lineage":["https://openalex.org/I150744194"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kana Shimizu","raw_affiliation_strings":["AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0001-6452-9091","affiliations":[{"raw_affiliation_string":"AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), Tokyo, Japan","institution_ids":["https://openalex.org/I150744194"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.819,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.7893796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"16","issue":"5","first_page":"1675","last_page":"1684"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10237","display_name":"Cryptography and Data Security","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10237","display_name":"Cryptography and Data Security","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11017","display_name":"Chaos-based Image/Signal Encryption","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6154450178146362},{"id":"https://openalex.org/keywords/alphabet","display_name":"Alphabet","score":0.599376380443573},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5556690692901611},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.4960814416408539},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4459722638130188},{"id":"https://openalex.org/keywords/wavelet","display_name":"Wavelet","score":0.4176045060157776},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3562605082988739},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3497680425643921},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2672940492630005},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.18297791481018066},{"id":"https://openalex.org/keywords/theoretical-physics","display_name":"Theoretical physics","score":0.0971517264842987},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.07624447345733643}],"concepts":[{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6154450178146362},{"id":"https://openalex.org/C112876837","wikidata":"https://www.wikidata.org/wiki/Q837518","display_name":"Alphabet","level":2,"score":0.599376380443573},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5556690692901611},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.4960814416408539},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4459722638130188},{"id":"https://openalex.org/C47432892","wikidata":"https://www.wikidata.org/wiki/Q831390","display_name":"Wavelet","level":2,"score":0.4176045060157776},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3562605082988739},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3497680425643921},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2672940492630005},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.18297791481018066},{"id":"https://openalex.org/C33332235","wikidata":"https://www.wikidata.org/wiki/Q18362","display_name":"Theoretical physics","level":1,"score":0.0971517264842987},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07624447345733643},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2018.2814039","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2814039","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/8863041/08310013.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29994070","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29994070","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1109/tcbb.2018.2814039","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2018.2814039","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/8863041/08310013.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2576085165","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"}],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320311508","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54"},{"id":"https://openalex.org/F4320322638","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83"},{"id":"https://openalex.org/F4320322832","display_name":"University of Tokyo","ror":"https://ror.org/057zh3y96"},{"id":"https://openalex.org/F4320338075","display_name":"Core Research for Evolutional Science and Technology","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320338111","display_name":"Precursory Research for Embryonic Science and Technology","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2790563985.pdf","grobid_xml":"https://content.openalex.org/works/W2790563985.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W58197974","https://openalex.org/W88105200","https://openalex.org/W274821518","https://openalex.org/W1635497822","https://openalex.org/W1729744401","https://openalex.org/W1806693672","https://openalex.org/W1837554175","https://openalex.org/W1860929530","https://openalex.org/W1889757464","https://openalex.org/W1892798954","https://openalex.org/W2047984110","https://openalex.org/W2058441236","https://openalex.org/W2085801087","https://openalex.org/W2087135382","https://openalex.org/W2088492763","https://openalex.org/W2108834246","https://openalex.org/W2127458553","https://openalex.org/W2132172731","https://openalex.org/W2134696992","https://openalex.org/W2158322625","https://openalex.org/W2181823477","https://openalex.org/W2224056471","https://openalex.org/W2406547600","https://openalex.org/W2517241835","https://openalex.org/W2769353087","https://openalex.org/W2949524341","https://openalex.org/W4210300416","https://openalex.org/W4247794781","https://openalex.org/W4298045849","https://openalex.org/W4300743249","https://openalex.org/W6678707656","https://openalex.org/W6679642144"],"related_works":["https://openalex.org/W2074481494","https://openalex.org/W2382174632","https://openalex.org/W2808006995","https://openalex.org/W2129959498","https://openalex.org/W4250156143","https://openalex.org/W2784060934","https://openalex.org/W2902714807","https://openalex.org/W4247156967","https://openalex.org/W2537489131","https://openalex.org/W2394084632"],"abstract_inverted_index":{"Biomedical":[0],"data":[1,18,131],"often":[2],"includes":[3],"personal":[4],"information,":[5],"and":[6,34,51,83,185],"the":[7,13,38,52,57,61,88,155,159,173,178],"technology":[8],"is":[9,70],"demanded":[10],"that":[11,102,171],"enables":[12,177],"searching":[14,179],"of":[15,78,90,110,144,158,167,172,180],"such":[16,93],"sensitive":[17,191],"while":[19],"protecting":[20],"privacy.":[21],"We":[22,97],"consider":[23],"a":[24,28,31,35,73,99,105,134,141,181],"case":[25],"in":[26,76,107],"which":[27],"server":[29,53],"has":[30],"text":[32],"database":[33,39,58,89,183],"user":[36,45],"searches":[37],"to":[40,47,55,127,153,163],"find":[41],"substring":[42],"matches.":[43],"The":[44,64],"wants":[46,54],"conceal":[48,56],"his/her":[49],"query":[50],"except":[59],"for":[60,67],"search":[62,86,104],"results.":[63],"previous":[65,174],"approach":[66],"this":[68],"problem":[69],"based":[71],"on":[72,87],"linear-time":[74],"algorithm":[75,101],"terms":[77],"alphabet":[79,92,148],"size":[80,149],"$\\mathbf{|\\Sigma":[81,111],"|}$|\u03a3|,":[82],"it":[84,187],"cannot":[85],"large":[91],"as":[94],"biomedical":[95,192],"documents.":[96],"present":[98],"novel":[100],"can":[103],"string":[106,143],"logarithmic":[108],"time":[109,157],"|}$|\u03a3|.":[112],"In":[113,137],"our":[114],"algorithm,":[115],"named":[116],"secure":[117],"wavelet":[118,135],"matrix":[119],"(sWM),":[120],"we":[121],"use":[122],"an":[123,129,138],"additively":[124],"homomorphic":[125],"encryption":[126],"build":[128],"efficient":[130],"structure":[132],"called":[133],"matrix.":[136],"experiment":[139],"using":[140],"simulated":[142],"length":[145],"10,000":[146],"whose":[147],"ranges":[150],"from":[151],"4":[152],"1024,":[154],"run":[156],"sWM":[160,176],"was":[161],"up":[162],"around":[164],"two":[165],"orders":[166],"magnitude":[168],"faster":[169],"than":[170],"method.":[175],"private":[182],"efficiently":[184],"thus":[186],"will":[188],"facilitate":[189],"utilizing":[190],"information.":[193]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
