{"id":"https://openalex.org/W2775044051","doi":"https://doi.org/10.1109/tcbb.2017.2779481","title":"Detecting Population-Differentiation Copy Number Variants in Human Population Tree by Sparse Group Selection","display_name":"Detecting Population-Differentiation Copy Number Variants in Human Population Tree by Sparse Group Selection","publication_year":2017,"publication_date":"2017-12-06","ids":{"openalex":"https://openalex.org/W2775044051","doi":"https://doi.org/10.1109/tcbb.2017.2779481","mag":"2775044051"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2017.2779481","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2017.2779481","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101852303","display_name":"Teng Zhang","orcid":"https://orcid.org/0000-0001-8378-1073"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I4210101327","display_name":"Twin Cities Orthopedics","ror":"https://ror.org/01en4s460","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210101327"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Huanan Zhang","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Minnesota, Twin Cities, MN"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Minnesota, Twin Cities, MN","institution_ids":["https://openalex.org/I4210101327","https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068502154","display_name":"David Roe","orcid":"https://orcid.org/0000-0001-7750-3026"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1318116459","display_name":"National Marrow Donor Program","ror":"https://ror.org/016cke005","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1318116459"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Roe","raw_affiliation_strings":["Bioinformatics Research, National Marrow Donor Program, University of Minnesota, Minneapolis, MN"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research, National Marrow Donor Program, University of Minnesota, Minneapolis, MN","institution_ids":["https://openalex.org/I1318116459","https://openalex.org/I130238516"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066338313","display_name":"Rui Kuang","orcid":"https://orcid.org/0000-0002-4916-903X"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I4210101327","display_name":"Twin Cities Orthopedics","ror":"https://ror.org/01en4s460","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210101327"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Kuang","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Minnesota, Twin Cities, MN"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Minnesota, Twin Cities, MN","institution_ids":["https://openalex.org/I4210101327","https://openalex.org/I130238516"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101852303"],"corresponding_institution_ids":["https://openalex.org/I130238516","https://openalex.org/I4210101327"],"apc_list":null,"apc_paid":null,"fwci":0.4404,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.73700094,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"16","issue":"2","first_page":"538","last_page":"549"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6773212552070618},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6559262275695801},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.6328378915786743},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5855289101600647},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.57551109790802},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5679094791412354},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.47203174233436584},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.45769649744033813},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4524959921836853},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.42186439037323},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3093404769897461},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.27767032384872437},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.15938854217529297},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13501963019371033},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.13067927956581116},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.10460275411605835},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.0691705048084259},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0657041072845459}],"concepts":[{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6773212552070618},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6559262275695801},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.6328378915786743},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5855289101600647},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.57551109790802},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5679094791412354},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.47203174233436584},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.45769649744033813},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4524959921836853},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.42186439037323},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3093404769897461},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.27767032384872437},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.15938854217529297},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13501963019371033},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.13067927956581116},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.10460275411605835},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0691705048084259},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0657041072845459},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tcbb.2017.2779481","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2017.2779481","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W3219084","https://openalex.org/W1988780263","https://openalex.org/W1989060270","https://openalex.org/W2034197594","https://openalex.org/W2034770296","https://openalex.org/W2039743841","https://openalex.org/W2047550265","https://openalex.org/W2058401000","https://openalex.org/W2061008984","https://openalex.org/W2104549677","https://openalex.org/W2107916366","https://openalex.org/W2124429242","https://openalex.org/W2124676809","https://openalex.org/W2135046866","https://openalex.org/W2155707112","https://openalex.org/W2162927194","https://openalex.org/W2166657289","https://openalex.org/W2169944788","https://openalex.org/W3101782091","https://openalex.org/W6600126799","https://openalex.org/W6678541964"],"related_works":["https://openalex.org/W2513883126","https://openalex.org/W2996064479","https://openalex.org/W2362218761","https://openalex.org/W2365914065","https://openalex.org/W2062354928","https://openalex.org/W2113708670","https://openalex.org/W3166677598","https://openalex.org/W2088120817","https://openalex.org/W2026058428","https://openalex.org/W2082414949"],"abstract_inverted_index":{"Copy-number":[0],"variants":[1],"(CNVs)":[2],"account":[3],"for":[4,99],"a":[5,19,36,48,66],"substantial":[6],"proportion":[7],"of":[8,38,42,60,69,78,86,103,130,136,142,156,190],"human":[9,70,144],"genetic":[10],"variations.":[11],"Understanding":[12],"the":[13,43,87,91,95,112,116,134,140,143,157,163,187],"CNV":[14,23,58,76,121,128,158,165,192],"diversities":[15],"across":[16,62],"populations":[17,31,63,79,96,118,137],"is":[18,196],"computational":[20],"challenge":[21],"because":[22],"patterns":[24],"are":[25,97],"often":[26],"present":[27],"in":[28,35,119,172],"several":[29],"related":[30],"and":[32,133,153,167,176],"only":[33],"occur":[34],"subgroup":[37],"individuals":[39],"within":[40],"each":[41,131],"population.":[44],"This":[45],"paper":[46],"introduces":[47],"tree-guided":[49],"sparse":[50],"group":[51],"selection":[52],"algorithm":[53,74,109,125],"(treeSGS)":[54],"to":[55,110],"detect":[56],"population-differentiation":[57,104,169,191],"markers":[59,77,129,166],"subgroups":[61],"organized":[64,138],"by":[65,148],"phylogenetic":[67],"tree":[68,88],"populations.":[71],"The":[72,123],"treeSGS":[73,108,124,183],"detects":[75],"associated":[80],"with":[81],"nodes":[82],"from":[83,115],"all":[84],"levels":[85],"such":[89],"that":[90,182],"evolutionary":[92],"relations":[93],"among":[94,150],"incorporated":[98],"more":[100],"accurate":[101],"detection":[102],"CNVs.":[105],"We":[106],"applied":[107],"study":[111],"1,179":[113],"samples":[114],"11":[117],"Hapmap3":[120],"data.":[122],"accurately":[126],"identifies":[127],"population":[132,145],"collection":[135],"under":[139],"branches":[141],"tree,":[146],"validated":[147],"consistency":[149],"family":[151],"trios":[152],"SNP":[154],"characterizations":[155],"regions.":[159],"Further":[160],"comparison":[161],"between":[162],"detected":[164],"other":[168,177],"CNVs":[170],"reported":[171],"1,000":[173],"genome":[174],"data":[175],"recent":[178],"studies":[179],"also":[180],"shows":[181],"can":[184],"significantly":[185],"improve":[186],"current":[188],"annotations":[189],"markers.":[193],"TreeSGS":[194],"package":[195],"available":[197],"at":[198],"https://github.com/kuanglab/treeSGS.":[199]},"counts_by_year":[{"year":2020,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2017-12-22T00:00:00"}
