{"id":"https://openalex.org/W2625968153","doi":"https://doi.org/10.1109/tcbb.2017.2715842","title":"NewGOA: Predicting New GO Annotations of Proteins by Bi-Random Walks on a Hybrid Graph","display_name":"NewGOA: Predicting New GO Annotations of Proteins by Bi-Random Walks on a Hybrid Graph","publication_year":2017,"publication_date":"2017-06-15","ids":{"openalex":"https://openalex.org/W2625968153","doi":"https://doi.org/10.1109/tcbb.2017.2715842","mag":"2625968153","pmid":"https://pubmed.ncbi.nlm.nih.gov/28641268"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2017.2715842","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2017.2715842","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027082940","display_name":"Guoxian Yu","orcid":"https://orcid.org/0000-0002-1667-6705"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoxian Yu","raw_affiliation_strings":["College of Computer and Information Sciences, Southwest University, Chongqing, China"],"raw_orcid":"https://orcid.org/0000-0002-1667-6705","affiliations":[{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101990230","display_name":"Guangyuan Fu","orcid":"https://orcid.org/0000-0002-1960-0546"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangyuan Fu","raw_affiliation_strings":["College of Computer and Information Sciences, Southwest University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100384767","display_name":"Jun Wang","orcid":"https://orcid.org/0000-0002-5890-0365"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["College of Computer and Information Sciences, Southwest University, Chongqing, China"],"raw_orcid":"https://orcid.org/0000-0002-5890-0365","affiliations":[{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082564890","display_name":"Yingwen Zhao","orcid":"https://orcid.org/0000-0002-3773-5858"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingwen Zhao","raw_affiliation_strings":["College of Computer and Information Sciences, Southwest University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I142108993"],"apc_list":null,"apc_paid":null,"fwci":2.4327,"has_fulltext":false,"cited_by_count":40,"citation_normalized_percentile":{"value":0.89786143,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"4","first_page":"1390","last_page":"1402"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6849602460861206},{"id":"https://openalex.org/keywords/random-walk","display_name":"Random walk","score":0.5831111073493958},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5197629332542419},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5045582056045532},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4990503787994385},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.4679775536060333},{"id":"https://openalex.org/keywords/homo-sapiens","display_name":"Homo sapiens","score":0.4314113259315491},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.4125532805919647},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40804940462112427},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2390792965888977},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2304859757423401},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17049908638000488},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14727744460105896}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6849602460861206},{"id":"https://openalex.org/C121194460","wikidata":"https://www.wikidata.org/wiki/Q856741","display_name":"Random walk","level":2,"score":0.5831111073493958},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5197629332542419},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5045582056045532},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4990503787994385},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.4679775536060333},{"id":"https://openalex.org/C2777938546","wikidata":"https://www.wikidata.org/wiki/Q5","display_name":"Homo sapiens","level":2,"score":0.4314113259315491},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.4125532805919647},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40804940462112427},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2390792965888977},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2304859757423401},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17049908638000488},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14727744460105896},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2017.2715842","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2017.2715842","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28641268","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28641268","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1984806465","display_name":null,"funder_award_id":"CYS16070","funder_id":"https://openalex.org/F4320335872","funder_display_name":"Chongqing Graduate Student Research Innovation Project"},{"id":"https://openalex.org/G2758728005","display_name":null,"funder_award_id":"XDJK2016B009","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3027373440","display_name":null,"funder_award_id":"XDJK2017D061","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4372538537","display_name":null,"funder_award_id":"61402378","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5258682401","display_name":null,"funder_award_id":"2362015XK07","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320335872","display_name":"Chongqing Graduate Student Research Innovation Project","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":70,"referenced_works":["https://openalex.org/W194789113","https://openalex.org/W1486817521","https://openalex.org/W1506427777","https://openalex.org/W1647729745","https://openalex.org/W1895597370","https://openalex.org/W1975414584","https://openalex.org/W1980948656","https://openalex.org/W1993760308","https://openalex.org/W2000297641","https://openalex.org/W2001004762","https://openalex.org/W2027439534","https://openalex.org/W2038122249","https://openalex.org/W2046482984","https://openalex.org/W2048947602","https://openalex.org/W2049170138","https://openalex.org/W2057119643","https://openalex.org/W2060769471","https://openalex.org/W2061453990","https://openalex.org/W2068072987","https://openalex.org/W2069313265","https://openalex.org/W2073835183","https://openalex.org/W2081741335","https://openalex.org/W2082380079","https://openalex.org/W2082607144","https://openalex.org/W2084168100","https://openalex.org/W2084955942","https://openalex.org/W2092409698","https://openalex.org/W2098427571","https://openalex.org/W2098432760","https://openalex.org/W2099364528","https://openalex.org/W2103017472","https://openalex.org/W2107710781","https://openalex.org/W2108892946","https://openalex.org/W2117486996","https://openalex.org/W2119821739","https://openalex.org/W2120688086","https://openalex.org/W2124045889","https://openalex.org/W2130427273","https://openalex.org/W2135526239","https://openalex.org/W2141879010","https://openalex.org/W2142088140","https://openalex.org/W2152360905","https://openalex.org/W2154455818","https://openalex.org/W2155440340","https://openalex.org/W2155977075","https://openalex.org/W2156690298","https://openalex.org/W2158216734","https://openalex.org/W2159348493","https://openalex.org/W2161955763","https://openalex.org/W2162813650","https://openalex.org/W2163118979","https://openalex.org/W2163485494","https://openalex.org/W2164996392","https://openalex.org/W2165858555","https://openalex.org/W2166468869","https://openalex.org/W2166985665","https://openalex.org/W2169059428","https://openalex.org/W2169896388","https://openalex.org/W2227395312","https://openalex.org/W2261387751","https://openalex.org/W2313125707","https://openalex.org/W2323179903","https://openalex.org/W2338910273","https://openalex.org/W2401071219","https://openalex.org/W2512308096","https://openalex.org/W3046265042","https://openalex.org/W4239510810","https://openalex.org/W6636975626","https://openalex.org/W6682494755","https://openalex.org/W6725795899"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W4312814274","https://openalex.org/W1590307681","https://openalex.org/W2536018345","https://openalex.org/W4285370786","https://openalex.org/W2296488620","https://openalex.org/W2358353312","https://openalex.org/W2353836703"],"abstract_inverted_index":{"A":[0],"remaining":[1],"key":[2],"challenge":[3],"of":[4,12,24,29,38,70,73,91,125,133,153,186],"modern":[5],"biology":[6],"is":[7],"annotating":[8],"the":[9,27,117,163,171],"functional":[10],"roles":[11],"proteins.":[13,92,126],"Various":[14],"computational":[15],"models":[16],"have":[17],"been":[18],"proposed":[19,43],"for":[20,55,60,95],"this":[21],"challenge.":[22],"Most":[23],"them":[25,39],"assume":[26],"annotations":[28,54,90,124,132,152],"annotated":[30,57],"proteins":[31,58,103,154,179],"are":[32,40,188],"complete.":[33],"But":[34],"in":[35],"fact,":[36],"many":[37],"incomplete.":[41],"We":[42],"a":[44,66,107],"method":[45],"called":[46],"NewGOA":[47,64,105,144,187],"to":[48,79,120],"predict":[49,121,150],"new":[50,122,151],"Gene":[51],"Ontology":[52],"(GO)":[53],"incompletely":[56],"and":[59,76,88,102,139,148,168,178,184],"completely":[61],"un-annotated":[62],"ones.":[63],"employs":[65],"hybrid":[67,118],"graph,":[68,119],"composed":[69],"two":[71,134],"types":[72],"nodes":[74],"(proteins":[75],"GO":[77,99,123,131,175],"terms),":[78],"encode":[80],"interactions":[81],"between":[82,86,98,174],"proteins,":[83],"hierarchical":[84],"relationships":[85],"terms":[87,100,176],"available":[89,189],"To":[93],"account":[94],"structural":[96,172],"difference":[97,173],"subgraph":[101,177],"subgraph,":[104],"applies":[106],"bi-random":[108,164],"walks":[109,115,165],"algorithm,":[110],"which":[111],"executes":[112],"asynchronous":[113],"random":[114],"on":[116,129],"Experimental":[127,159],"study":[128],"archived":[130],"model":[135],"species":[136],"(H.":[137],"Sapiens":[138],"S.":[140],"cerevisiae)":[141],"shows":[142],"that":[143],"can":[145,166],"more":[146],"accurately":[147],"efficiently":[149],"than":[155],"other":[156],"related":[157],"methods.":[158],"results":[160],"also":[161],"indicate":[162],"explore":[167],"further":[169],"exploit":[170],"subgraph.":[180],"The":[181],"supplementary":[182],"files":[183],"codes":[185],"at:":[190],"http://mlda.swu.edu.cn/codes.php?name=NewGOA.":[191]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
