{"id":"https://openalex.org/W2626435434","doi":"https://doi.org/10.1109/tcbb.2017.2715016","title":"A Two-Stage Biomedical Event Trigger Detection Method Integrating Feature Selection and Word Embeddings","display_name":"A Two-Stage Biomedical Event Trigger Detection Method Integrating Feature Selection and Word Embeddings","publication_year":2017,"publication_date":"2017-06-13","ids":{"openalex":"https://openalex.org/W2626435434","doi":"https://doi.org/10.1109/tcbb.2017.2715016","mag":"2626435434","pmid":"https://pubmed.ncbi.nlm.nih.gov/28622674"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2017.2715016","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2017.2715016","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027800550","display_name":"Xinyu He","orcid":"https://orcid.org/0000-0002-0482-7430"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xinyu He","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082868235","display_name":"Lishuang Li","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lishuang Li","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0002-4189-1466","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062666378","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0002-2814-8969"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101888104","display_name":"Xiaoming Yu","orcid":"https://orcid.org/0000-0001-5799-8519"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoming Yu","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008478540","display_name":"Jun Meng","orcid":"https://orcid.org/0000-0002-7357-8562"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Meng","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5027800550"],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":1.4599,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.81794179,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"15","issue":"4","first_page":"1325","last_page":"1332"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7406458258628845},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.6924954056739807},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6725682020187378},{"id":"https://openalex.org/keywords/stage","display_name":"Stage (stratigraphy)","score":0.6354016065597534},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6171947717666626},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5807370543479919},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.5331276059150696},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.5254544019699097},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5181071162223816},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4875330626964569},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4485793709754944},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.44447505474090576},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4263670742511749},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4203068017959595},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.18881255388259888},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10525119304656982},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.051291853189468384}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7406458258628845},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.6924954056739807},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6725682020187378},{"id":"https://openalex.org/C146357865","wikidata":"https://www.wikidata.org/wiki/Q1123245","display_name":"Stage (stratigraphy)","level":2,"score":0.6354016065597534},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6171947717666626},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5807370543479919},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.5331276059150696},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.5254544019699097},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5181071162223816},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4875330626964569},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4485793709754944},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.44447505474090576},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4263670742511749},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4203068017959595},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.18881255388259888},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10525119304656982},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.051291853189468384},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008491","descriptor_name":"Medical Informatics Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008491","descriptor_name":"Medical Informatics Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008491","descriptor_name":"Medical Informatics Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2017.2715016","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2017.2715016","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28622674","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28622674","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.7900000214576721}],"awards":[{"id":"https://openalex.org/G3046329477","display_name":null,"funder_award_id":"61672126","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5264123772","display_name":null,"funder_award_id":"61472061","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W154351976","https://openalex.org/W1563088657","https://openalex.org/W1988622308","https://openalex.org/W1989375079","https://openalex.org/W2032566933","https://openalex.org/W2072167633","https://openalex.org/W2075655036","https://openalex.org/W2088634345","https://openalex.org/W2098162425","https://openalex.org/W2098722636","https://openalex.org/W2115548755","https://openalex.org/W2131462252","https://openalex.org/W2141599568","https://openalex.org/W2143426320","https://openalex.org/W2146864948","https://openalex.org/W2148603752","https://openalex.org/W2153579005","https://openalex.org/W2156909104","https://openalex.org/W2158069748","https://openalex.org/W2160218441","https://openalex.org/W2209992309","https://openalex.org/W2414674322","https://openalex.org/W2534916276","https://openalex.org/W3009009611","https://openalex.org/W4294170691","https://openalex.org/W6606243021","https://openalex.org/W6679224782","https://openalex.org/W6680890276","https://openalex.org/W6682691769","https://openalex.org/W6683584131","https://openalex.org/W6729081607"],"related_works":["https://openalex.org/W2887358545","https://openalex.org/W4241083716","https://openalex.org/W2914463643","https://openalex.org/W2096951189","https://openalex.org/W3185751515","https://openalex.org/W4255692567","https://openalex.org/W3179963059","https://openalex.org/W2108706252","https://openalex.org/W1569283511","https://openalex.org/W2380784125"],"abstract_inverted_index":{"Extracting":[0],"biomedical":[1,4,14,26],"events":[2],"from":[3],"literature":[5],"plays":[6],"an":[7,107],"important":[8],"role":[9],"in":[10,25,52,70],"the":[11,18,56,61,71,74,96,114],"field":[12],"of":[13,109],"text":[15],"mining,":[16],"and":[17,44,47,69,93],"trigger":[19,35,39],"detection":[20,40],"is":[21],"a":[22,31],"key":[23],"step":[24],"event":[27,98],"extraction.":[28],"We":[29],"propose":[30],"two-stage":[32],"method":[33,105],"for":[34,67],"detection,":[36],"which":[37,63,112],"divides":[38],"into":[41],"recognition":[42],"stage":[43],"classification":[45,81],"stage,":[46,58,73],"different":[48],"features":[49,62,75],"are":[50,64,77,82],"selected":[51],"each":[53],"stage.":[54],"In":[55],"first":[57],"we":[59,85],"select":[60],"more":[65,78],"suitable":[66],"recognition,":[68],"second":[72],"that":[76],"helpful":[79],"to":[80,89],"adopted.":[83],"Furthermore,":[84],"integrate":[86],"word":[87],"embeddings":[88],"represent":[90],"words":[91],"semantically":[92],"syntactically.":[94],"On":[95],"multi-level":[97],"extraction":[99],"(MLEE)":[100],"corpus":[101],"test":[102],"dataset,":[103],"our":[104],"achieves":[106],"F-score":[108],"79.75":[110],"percent,":[111],"outperforms":[113],"state-of-the-art":[115],"systems.":[116]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":6},{"year":2017,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
