{"id":"https://openalex.org/W2559617060","doi":"https://doi.org/10.1109/tcbb.2016.2635143","title":"A Memetic Algorithm for 3D Protein Structure Prediction Problem","display_name":"A Memetic Algorithm for 3D Protein Structure Prediction Problem","publication_year":2016,"publication_date":"2016-12-02","ids":{"openalex":"https://openalex.org/W2559617060","doi":"https://doi.org/10.1109/tcbb.2016.2635143","mag":"2559617060","pmid":"https://pubmed.ncbi.nlm.nih.gov/27925594"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2016.2635143","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2016.2635143","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089631150","display_name":"Leonardo de Lima Corr\u00eaa","orcid":"https://orcid.org/0000-0001-5183-8581"},"institutions":[{"id":"https://openalex.org/I130442723","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64","country_code":"BR","type":"education","lineage":["https://openalex.org/I130442723"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Leonardo Correa","raw_affiliation_strings":["Institute of Informatics, Federal University of Rio Grande do Sul, Porto Alegre, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Informatics, Federal University of Rio Grande do Sul, Porto Alegre, Brazil","institution_ids":["https://openalex.org/I130442723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053385364","display_name":"Bruno Borguesan","orcid":"https://orcid.org/0000-0001-9325-5253"},"institutions":[{"id":"https://openalex.org/I130442723","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64","country_code":"BR","type":"education","lineage":["https://openalex.org/I130442723"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Bruno Borguesan","raw_affiliation_strings":["Institute of Informatics, Federal University of Rio Grande do Sul, Porto Alegre, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Informatics, Federal University of Rio Grande do Sul, Porto Alegre, Brazil","institution_ids":["https://openalex.org/I130442723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109524576","display_name":"Camilo Farf\u00e1n","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Camilo Farfan","raw_affiliation_strings":["Department de Ingenier\u00eda Inform\u00e1tica, Center for Biotechnology and Bioengineering, U de Santiago, Santiago, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department de Ingenier\u00eda Inform\u00e1tica, Center for Biotechnology and Bioengineering, U de Santiago, Santiago, Chile","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005828423","display_name":"Mario Inostroza-Ponta","orcid":"https://orcid.org/0000-0003-1295-8972"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mario Inostroza-Ponta","raw_affiliation_strings":["Department de Ingenier\u00eda Inform\u00e1tica, Center for Biotechnology and Bioengineering, U de Santiago, Santiago, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department de Ingenier\u00eda Inform\u00e1tica, Center for Biotechnology and Bioengineering, U de Santiago, Santiago, Chile","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026741733","display_name":"M\u00e1rcio Dorn","orcid":"https://orcid.org/0000-0001-8534-3480"},"institutions":[{"id":"https://openalex.org/I130442723","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64","country_code":"BR","type":"education","lineage":["https://openalex.org/I130442723"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marcio Dorn","raw_affiliation_strings":["Institute of Informatics, Federal University of Rio Grande do Sul, Porto Alegre, Brazil"],"raw_orcid":"https://orcid.org/0000-0001-8534-3480","affiliations":[{"raw_affiliation_string":"Institute of Informatics, Federal University of Rio Grande do Sul, Porto Alegre, Brazil","institution_ids":["https://openalex.org/I130442723"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.0894,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.87553492,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"15","issue":"3","first_page":"690","last_page":"704"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/memetic-algorithm","display_name":"Memetic algorithm","score":0.8901284337043762},{"id":"https://openalex.org/keywords/crossover","display_name":"Crossover","score":0.7115888595581055},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5698526501655579},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5528782606124878},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4688815772533417},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4680255055427551},{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.4407593309879303},{"id":"https://openalex.org/keywords/local-search","display_name":"Local search (optimization)","score":0.41579949855804443},{"id":"https://openalex.org/keywords/metaheuristic","display_name":"Metaheuristic","score":0.41205182671546936},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.40250861644744873},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3762381076812744},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32651087641716003},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2890984117984772},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.22913137078285217}],"concepts":[{"id":"https://openalex.org/C35129592","wikidata":"https://www.wikidata.org/wiki/Q324793","display_name":"Memetic algorithm","level":3,"score":0.8901284337043762},{"id":"https://openalex.org/C122507166","wikidata":"https://www.wikidata.org/wiki/Q628906","display_name":"Crossover","level":2,"score":0.7115888595581055},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5698526501655579},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5528782606124878},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4688815772533417},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4680255055427551},{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.4407593309879303},{"id":"https://openalex.org/C135320971","wikidata":"https://www.wikidata.org/wiki/Q1868524","display_name":"Local search (optimization)","level":2,"score":0.41579949855804443},{"id":"https://openalex.org/C109718341","wikidata":"https://www.wikidata.org/wiki/Q1385229","display_name":"Metaheuristic","level":2,"score":0.41205182671546936},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.40250861644744873},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3762381076812744},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32651087641716003},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2890984117984772},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.22913137078285217},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2016.2635143","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2016.2635143","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27925594","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27925594","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmid:28029627","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28029627","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":85,"referenced_works":["https://openalex.org/W18216792","https://openalex.org/W27115447","https://openalex.org/W59526888","https://openalex.org/W81153376","https://openalex.org/W113688923","https://openalex.org/W176320049","https://openalex.org/W208030025","https://openalex.org/W659473080","https://openalex.org/W1433532214","https://openalex.org/W1481729573","https://openalex.org/W1548178570","https://openalex.org/W1559956479","https://openalex.org/W1909149576","https://openalex.org/W1913397490","https://openalex.org/W1956663338","https://openalex.org/W1974040526","https://openalex.org/W1978041552","https://openalex.org/W1980425121","https://openalex.org/W2008708467","https://openalex.org/W2018400595","https://openalex.org/W2024060531","https://openalex.org/W2027249579","https://openalex.org/W2031054395","https://openalex.org/W2033496784","https://openalex.org/W2033650210","https://openalex.org/W2035885031","https://openalex.org/W2045777307","https://openalex.org/W2047289990","https://openalex.org/W2047962024","https://openalex.org/W2063916063","https://openalex.org/W2065608907","https://openalex.org/W2068951131","https://openalex.org/W2071753317","https://openalex.org/W2071811516","https://openalex.org/W2077745293","https://openalex.org/W2087036892","https://openalex.org/W2097377801","https://openalex.org/W2100494857","https://openalex.org/W2107903949","https://openalex.org/W2108372599","https://openalex.org/W2108508060","https://openalex.org/W2114251106","https://openalex.org/W2114520383","https://openalex.org/W2115167726","https://openalex.org/W2118044993","https://openalex.org/W2119394534","https://openalex.org/W2126677834","https://openalex.org/W2128703083","https://openalex.org/W2132820390","https://openalex.org/W2133179696","https://openalex.org/W2134059200","https://openalex.org/W2134509774","https://openalex.org/W2134776608","https://openalex.org/W2135815512","https://openalex.org/W2136989186","https://openalex.org/W2137965757","https://openalex.org/W2143626353","https://openalex.org/W2151581834","https://openalex.org/W2154106236","https://openalex.org/W2155201844","https://openalex.org/W2156728410","https://openalex.org/W2161151688","https://openalex.org/W2163176800","https://openalex.org/W2164130591","https://openalex.org/W2165667682","https://openalex.org/W2168909179","https://openalex.org/W2170186790","https://openalex.org/W2171559274","https://openalex.org/W2171755502","https://openalex.org/W2248142141","https://openalex.org/W2323927982","https://openalex.org/W2337606518","https://openalex.org/W2396236058","https://openalex.org/W2489066590","https://openalex.org/W2515672653","https://openalex.org/W2615785200","https://openalex.org/W2624262714","https://openalex.org/W2911242871","https://openalex.org/W3148081761","https://openalex.org/W4230932396","https://openalex.org/W4401328540","https://openalex.org/W6600754543","https://openalex.org/W6601083688","https://openalex.org/W6683225304","https://openalex.org/W6725899306"],"related_works":["https://openalex.org/W2163647484","https://openalex.org/W181653686","https://openalex.org/W1939200287","https://openalex.org/W47248985","https://openalex.org/W2000270779","https://openalex.org/W2082305040","https://openalex.org/W4381955380","https://openalex.org/W2129486222","https://openalex.org/W3144175025","https://openalex.org/W1778024729"],"abstract_inverted_index":{"Memetic":[0,34,42],"Algorithms":[1],"are":[2,174],"population-based":[3],"metaheuristics":[4],"intrinsically":[5],"concerned":[6],"with":[7,79,163,181],"exploiting":[8],"all":[9],"available":[10],"knowledge":[11,22,87],"about":[12],"the":[13,33,46,80,90,104,110,127,130,133,145,164,186],"problem":[14,20],"under":[15],"study.":[16],"The":[17,52,113],"incorporation":[18],"of":[19,32,85,122,132,178,188],"domain":[21],"is":[23],"not":[24],"an":[25,96],"optional":[26],"mechanism,":[27],"but":[28],"a":[29,41,55,60,65],"fundamental":[30],"feature":[31],"Algorithms.":[35],"In":[36],"this":[37],"paper,":[38],"we":[39],"present":[40],"Algorithm":[43],"to":[44,77,102,108,135],"tackle":[45],"three-dimensional":[47],"protein":[48,120,138,166],"structure":[49],"prediction":[50,183],"problem.":[51,81],"method":[53],"uses":[54],"structured":[56],"population":[57],"and":[58,74,107,126,155],"incorporates":[59],"Simulated":[61],"Annealing":[62],"algorithm":[63,115,134,147],"as":[64,69,71],"local":[66],"search":[67,105,111],"strategy,":[68],"well":[70],"ad-hoc":[72],"crossover":[73],"mutation":[75],"operators":[76],"deal":[78],"It":[82],"takes":[83],"advantage":[84],"structural":[86],"stored":[88],"in":[89,161,176],"Protein":[91],"Data":[92],"Bank,":[93],"by":[94],"using":[95],"Angle":[97],"Probability":[98],"List":[99],"that":[100,144,171],"helps":[101],"reduce":[103],"space":[106],"guide":[109],"strategy.":[112],"proposed":[114,146],"was":[116],"tested":[117],"on":[118],"nineteen":[119],"sequences":[121],"amino":[123],"acid":[124],"residues,":[125],"results":[128,141,173],"show":[129,170],"ability":[131],"find":[136,149],"native-like":[137],"structures.":[139,167],"Experimental":[140],"have":[142],"revealed":[143],"can":[148],"good":[150],"solutions":[151],"regarding":[152],"root-mean-square":[153],"deviation":[154],"global":[156],"distance":[157],"total":[158],"score":[159],"test":[160],"comparison":[162],"experimental":[165],"We":[168],"also":[169],"our":[172,189],"comparable":[175],"terms":[177],"folding":[179],"organization":[180],"state-of-the-art":[182],"methods,":[184],"corroborating":[185],"effectiveness":[187],"proposal.":[190]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2016-12-08T00:00:00"}
