{"id":"https://openalex.org/W2312081388","doi":"https://doi.org/10.1109/tcbb.2016.2527654","title":"Extending and Applying Spartan to Perform Temporal Sensitivity Analyses for Predicting Changes in Influential Biological Pathways in Computational Models","display_name":"Extending and Applying Spartan to Perform Temporal Sensitivity Analyses for Predicting Changes in Influential Biological Pathways in Computational Models","publication_year":2016,"publication_date":"2016-02-11","ids":{"openalex":"https://openalex.org/W2312081388","doi":"https://doi.org/10.1109/tcbb.2016.2527654","mag":"2312081388","pmid":"https://pubmed.ncbi.nlm.nih.gov/26887007"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2016.2527654","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2016.2527654","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1109/tcbb.2016.2527654","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024360871","display_name":"Kieran Alden","orcid":"https://orcid.org/0000-0003-4411-1776"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]},{"id":"https://openalex.org/I69768126","display_name":"Hull York Medical School","ror":"https://ror.org/0003e4m70","country_code":"GB","type":"education","lineage":["https://openalex.org/I69768126"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kieran Alden","raw_affiliation_strings":["York Computational Immunology Lab, the Centre for Immunology and Infection at the Department of Biology and Hull York Medical School, Department of Electronics, University of York, Heslington, York, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-4411-1776","affiliations":[{"raw_affiliation_string":"York Computational Immunology Lab, the Centre for Immunology and Infection at the Department of Biology and Hull York Medical School, Department of Electronics, University of York, Heslington, York, United Kingdom","institution_ids":["https://openalex.org/I52099693","https://openalex.org/I69768126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080582720","display_name":"Jon Timmis","orcid":"https://orcid.org/0000-0003-1055-0471"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jon Timmis","raw_affiliation_strings":["SimOmics Ltd, York, North Yorkshire, United Kingdom","York Computational Immunology Lab and Department of Electronics, University of York, York, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SimOmics Ltd, York, North Yorkshire, United Kingdom","institution_ids":[]},{"raw_affiliation_string":"York Computational Immunology Lab and Department of Electronics, University of York, York, United Kingdom","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105835589","display_name":"Paul S. Andrews","orcid":null},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul S. Andrews","raw_affiliation_strings":["SimOmics Ltd, York, North Yorkshire, United Kingdom","York Computational Immunology Lab and Department of Electronics, University of York, York, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SimOmics Ltd, York, North Yorkshire, United Kingdom","institution_ids":[]},{"raw_affiliation_string":"York Computational Immunology Lab and Department of Electronics, University of York, York, United Kingdom","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010960233","display_name":"Henrique Veiga\u2010Fernandes","orcid":"https://orcid.org/0000-0001-6216-1836"},"institutions":[{"id":"https://openalex.org/I4392738257","display_name":"Instituto de Medicina Molecular Jo\u00e3o Lobo Antunes","ror":"https://ror.org/019g8w217","country_code":null,"type":"facility","lineage":["https://openalex.org/I141596103","https://openalex.org/I4392738257"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Henrique Veiga-Fernandes","raw_affiliation_strings":["Instituto de Medicina Molecular, Faculdade de Medicina de Lisboa, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Medicina Molecular, Faculdade de Medicina de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I4392738257"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048352835","display_name":"Mark Coles","orcid":"https://orcid.org/0000-0001-8079-9358"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]},{"id":"https://openalex.org/I69768126","display_name":"Hull York Medical School","ror":"https://ror.org/0003e4m70","country_code":"GB","type":"education","lineage":["https://openalex.org/I69768126"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Coles","raw_affiliation_strings":["SimOmics Ltd., York, North Yorkshire, United Kingdom","York Computational Immunology Lab, the Centre for Immunology and Infection at the Department of Biology and Hull York Medical School, University of York, Heslington, York, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SimOmics Ltd., York, North Yorkshire, United Kingdom","institution_ids":[]},{"raw_affiliation_string":"York Computational Immunology Lab, the Centre for Immunology and Infection at the Department of Biology and Hull York Medical School, University of York, Heslington, York, United Kingdom","institution_ids":["https://openalex.org/I52099693","https://openalex.org/I69768126"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":{"value":1527,"currency":"EUR","value_usd":1646},"fwci":0.4809,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.68597042,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"14","issue":"2","first_page":"431","last_page":"442"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10848","display_name":"Advanced Multi-Objective Optimization Algorithms","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.954200029373169,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spartan","display_name":"Spartan","score":0.626554012298584},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.6170775890350342},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5569479465484619},{"id":"https://openalex.org/keywords/contrast","display_name":"Contrast (vision)","score":0.4238913953304291},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.4222889542579651},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4221947193145752},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35178717970848083},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3476227819919586},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28571009635925293}],"concepts":[{"id":"https://openalex.org/C10689553","wikidata":"https://www.wikidata.org/wiki/Q405953","display_name":"Spartan","level":3,"score":0.626554012298584},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.6170775890350342},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5569479465484619},{"id":"https://openalex.org/C2776502983","wikidata":"https://www.wikidata.org/wiki/Q690182","display_name":"Contrast (vision)","level":2,"score":0.4238913953304291},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.4222889542579651},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4221947193145752},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35178717970848083},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3476227819919586},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28571009635925293},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.0},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010581","descriptor_name":"Peyer's Patches","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D010581","descriptor_name":"Peyer's Patches","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D010581","descriptor_name":"Peyer's Patches","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D010581","descriptor_name":"Peyer's Patches","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D010581","descriptor_name":"Peyer's Patches","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D010581","descriptor_name":"Peyer's Patches","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D010581","descriptor_name":"Peyer's Patches","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D010581","descriptor_name":"Peyer's Patches","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1109/tcbb.2016.2527654","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2016.2527654","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26887007","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26887007","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:96352","is_oa":true,"landing_page_url":"https://orcid.org/0000-0003-1055-0471>,","pdf_url":"https://eprints.whiterose.ac.uk/id/eprint/96352/1/07403919.pdf","source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:sure.sunderland.ac.uk:10844","is_oa":false,"landing_page_url":"http://sure.sunderland.ac.uk/view/creators/Alden=3AKieran=3A=3A.html>,","pdf_url":null,"source":{"id":"https://openalex.org/S4306402295","display_name":"Sunderland Repository (University of Sunderland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5728261","host_organization_name":"University of Sunderland","host_organization_lineage":["https://openalex.org/I5728261"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:968b9a3f-5fcb-4afc-a962-08d761f72630","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:968b9a3f-5fcb-4afc-a962-08d761f72630","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:osti.gov:1839814","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1839814","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1109/tcbb.2016.2527654","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2016.2527654","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1768913244","display_name":null,"funder_award_id":"G0601156","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G3885636676","display_name":null,"funder_award_id":"PTDC/SAU-MII/100016/2008","funder_id":"https://openalex.org/F4320337197","funder_display_name":"Nuclear Fuel Cycle and Supply Chain"},{"id":"https://openalex.org/G5021091238","display_name":null,"funder_award_id":"207057","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"},{"id":"https://openalex.org/G5378717371","display_name":"IDEAS Factory - Resilient Futures","funder_award_id":"EP/I005943/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5515747171","display_name":null,"funder_award_id":"313089","funder_id":"https://openalex.org/F4320312926","funder_display_name":"Crohn's and Colitis Foundation"},{"id":"https://openalex.org/G5573745944","display_name":"Institutional Strategic Support Fund 2011/12.","funder_award_id":"097829","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G606666009","display_name":null,"funder_award_id":"EP/I005943/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320307844","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810"},{"id":"https://openalex.org/F4320310935","display_name":"University of York","ror":"https://ror.org/04m01e293"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320312926","display_name":"Crohn's and Colitis Foundation","ror":"https://ror.org/05f2xbq60"},{"id":"https://openalex.org/F4320320005","display_name":"Royal Academy of Engineering","ror":"https://ror.org/0526snb40"},{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"},{"id":"https://openalex.org/F4320332773","display_name":"Centre for Chronic Diseases and Disorders","ror":"https://ror.org/04m01e293"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"},{"id":"https://openalex.org/F4320337197","display_name":"Nuclear Fuel Cycle and Supply Chain","ror":"https://ror.org/05tj7dm33"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W575496914","https://openalex.org/W1489810600","https://openalex.org/W1535481092","https://openalex.org/W1871004530","https://openalex.org/W1897184448","https://openalex.org/W1965335252","https://openalex.org/W1967819170","https://openalex.org/W1970318694","https://openalex.org/W1979034309","https://openalex.org/W1993321999","https://openalex.org/W2006538571","https://openalex.org/W2038669746","https://openalex.org/W2049648266","https://openalex.org/W2071471925","https://openalex.org/W2075406130","https://openalex.org/W2077157308","https://openalex.org/W2079604837","https://openalex.org/W2086829762","https://openalex.org/W2111237211","https://openalex.org/W2132635773","https://openalex.org/W2147703845","https://openalex.org/W2148655474","https://openalex.org/W2152803686","https://openalex.org/W2154155318","https://openalex.org/W2154328223","https://openalex.org/W2171501214","https://openalex.org/W2185516849","https://openalex.org/W2187969747","https://openalex.org/W2338717024","https://openalex.org/W3011730451","https://openalex.org/W3020953368","https://openalex.org/W4205300089","https://openalex.org/W4243645092","https://openalex.org/W4251988601","https://openalex.org/W6616584496","https://openalex.org/W6698708696","https://openalex.org/W7011724189"],"related_works":["https://openalex.org/W3215016102","https://openalex.org/W2047513257","https://openalex.org/W3110137422","https://openalex.org/W2182587364","https://openalex.org/W1956109649","https://openalex.org/W2601403494","https://openalex.org/W2797188297","https://openalex.org/W2807782912","https://openalex.org/W2808059059","https://openalex.org/W2312081388"],"abstract_inverted_index":{"Through":[0],"integrating":[1],"real":[2],"time":[3],"imaging,":[4],"computational":[5,74,105,135],"modelling,":[6],"and":[7,19,68,76,171],"statistical":[8,96],"analysis":[9,63,114],"approaches,":[10],"previous":[11],"work":[12],"has":[13],"suggested":[14],"that":[15,42,80,98,115,164],"the":[16,26,38,43,70,77,86,93,100,119,134,155,173,179],"induction":[17],"of":[18,95,121,137,181],"response":[20],"to":[21,37,66,91,157,162],"cell":[22,50],"adhesion":[23],"factors":[24],"is":[25,45],"key":[27],"initiating":[28],"pathway":[29],"in":[30,35,89,178],"early":[31],"lymphoid":[32,138,165],"tissue":[33,139,166],"development,":[34],"contrast":[36,99],"previously":[39],"accepted":[40],"view":[41],"process":[44],"triggered":[46],"by":[47,103,132],"chemokine":[48],"mediated":[49],"recruitment.":[51],"These":[52],"model":[53,75,81,106,136],"derived":[54],"hypotheses":[55],"were":[56],"developed":[57],"using":[58,133],"spartan,":[59],"an":[60],"open-source":[61],"sensitivity":[62],"toolkit":[64],"designed":[65],"establish":[67],"understand":[69],"relationship":[71],"between":[72],"a":[73,104,112,142,176],"biological":[78,122,182],"system":[79],"captures.":[82],"Here,":[83],"we":[84,152],"extend":[85],"functionality":[87,131],"available":[88],"spartan":[90,158],"permit":[92],"production":[94],"analyses":[97],"behavior":[101],"exhibited":[102],"at":[107,148],"various":[108],"simulated":[109],"time-points,":[110],"enabling":[111],"temporal":[113],"could":[116,168],"suggest":[117,163],"whether":[118],"influence":[120,180],"mechanisms":[123,183],"changes":[124],"over":[125],"time.":[126],"We":[127],"exemplify":[128],"this":[129],"extended":[130],"development":[140,167],"as":[141],"time-lapse":[143],"tool.":[144],"By":[145],"generating":[146],"results":[147],"twelve-":[149],"hour":[150],"intervals,":[151],"show":[153],"how":[154],"extensions":[156],"have":[159],"been":[160],"used":[161],"be":[169],"biphasic,":[170],"predict":[172],"time-point":[174],"when":[175],"switch":[177],"might":[184],"occur.":[185]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
