{"id":"https://openalex.org/W2132480267","doi":"https://doi.org/10.1109/tcbb.2015.2454931","title":"Guest Editors Introduction to the Special Issue on Software and Databases","display_name":"Guest Editors Introduction to the Special Issue on Software and Databases","publication_year":2015,"publication_date":"2015-07-01","ids":{"openalex":"https://openalex.org/W2132480267","doi":"https://doi.org/10.1109/tcbb.2015.2454931","mag":"2132480267","pmid":"https://pubmed.ncbi.nlm.nih.gov/26605381"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2015.2454931","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2015.2454931","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/7180481/07180483.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://ieeexplore.ieee.org/ielx7/8857/7180481/07180483.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103152604","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["Department of Computer Science, University of Missouri, Columbia, MO","Department of Computer Science, Informatics Institute, Columbia, MO"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Missouri, Columbia, MO","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Computer Science, Informatics Institute, Columbia, MO","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101402315","display_name":"Kun Huang","orcid":"https://orcid.org/0000-0002-3347-0688"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kun Huang","raw_affiliation_strings":["Department of Biomedical Informatics and the Department of Computer Science and Engineering, the Ohio State University, Columbus, OH"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics and the Department of Computer Science and Engineering, the Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078218837","display_name":"Jeanette P. Schmidt","orcid":"https://orcid.org/0000-0001-7565-5093"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jeanette Schmidt","raw_affiliation_strings":["Affymetrix Inc., 3420 Central Expressway, Santa Clara, CA",", Affymetrix Inc., 3420 Central Expressway, Santa Clara, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Affymetrix Inc., 3420 Central Expressway, Santa Clara, CA","institution_ids":[]},{"raw_affiliation_string":", Affymetrix Inc., 3420 Central Expressway, Santa Clara, CA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2645,"currency":"USD","value_usd":2645},"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"12","issue":"4","first_page":"793","last_page":"794"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9721999764442444,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9721999764442444,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6697165966033936},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5636845231056213},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5137549638748169},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5031537413597107},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4792230725288391},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.46632295846939087},{"id":"https://openalex.org/keywords/cover","display_name":"Cover (algebra)","score":0.454802006483078},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.44378945231437683},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.42962753772735596},{"id":"https://openalex.org/keywords/computational-genomics","display_name":"Computational genomics","score":0.42408889532089233},{"id":"https://openalex.org/keywords/special-section","display_name":"Special section","score":0.41869670152664185},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3219677805900574},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21641817688941956},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.18859192728996277},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12629610300064087},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1004858911037445}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6697165966033936},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5636845231056213},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5137549638748169},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5031537413597107},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4792230725288391},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.46632295846939087},{"id":"https://openalex.org/C2780428219","wikidata":"https://www.wikidata.org/wiki/Q16952335","display_name":"Cover (algebra)","level":2,"score":0.454802006483078},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.44378945231437683},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.42962753772735596},{"id":"https://openalex.org/C39238701","wikidata":"https://www.wikidata.org/wiki/Q2091816","display_name":"Computational genomics","level":5,"score":0.42408889532089233},{"id":"https://openalex.org/C2993458768","wikidata":"https://www.wikidata.org/wiki/Q3477549","display_name":"Special section","level":2,"score":0.41869670152664185},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3219677805900574},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21641817688941956},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.18859192728996277},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12629610300064087},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1004858911037445},{"id":"https://openalex.org/C61696701","wikidata":"https://www.wikidata.org/wiki/Q770766","display_name":"Engineering physics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2015.2454931","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2015.2454931","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/7180481/07180483.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26605381","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26605381","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":"Editorial"}],"best_oa_location":{"id":"doi:10.1109/tcbb.2015.2454931","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2015.2454931","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/7180481/07180483.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132480267.pdf","grobid_xml":"https://content.openalex.org/works/W2132480267.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2144813793","https://openalex.org/W4381571608","https://openalex.org/W2936116675","https://openalex.org/W2291027050","https://openalex.org/W2307569040","https://openalex.org/W1018570427","https://openalex.org/W1483126190","https://openalex.org/W2226172145","https://openalex.org/W1168214301","https://openalex.org/W3164740290"],"abstract_inverted_index":{"The":[0],"papers":[1,34],"in":[2,14,28,73],"this":[3],"special":[4],"section":[5],"focus":[6],"on":[7],"software":[8],"and":[9,16,24,30,44,50,60,66,68],"databases":[10],"that":[11],"are":[12,21],"central":[13],"bioinformatics":[15],"computational":[17,42],"biology..":[18],"These":[19,33],"programs":[20],"playing":[22],"more":[23,25],"important":[26],"roles":[27],"biology":[29],"medical":[31],"research.":[32],"cover":[35],"a":[36],"broad":[37],"range":[38],"of":[39,47],"topics,":[40],"including":[41],"genomics":[43],"transcriptomics,":[45],"analysis":[46],"biological":[48,62],"networks":[49],"interactions,":[51],"drug":[52],"design,":[53],"biomedical":[54,57],"signal/image":[55],"analysis,":[56],"text":[58],"mining":[59],"ontologies,":[61],"data":[63],"mining,":[64],"visualization":[65],"integration,":[67],"high":[69],"performance":[70],"computing":[71],"application":[72],"bioinformatics.":[74]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2016-06-24T00:00:00"}
