{"id":"https://openalex.org/W1987356149","doi":"https://doi.org/10.1109/tcbb.2015.2424417","title":"A Multimodal Approach for Protein Remote Homology Detection","display_name":"A Multimodal Approach for Protein Remote Homology Detection","publication_year":2015,"publication_date":"2015-04-20","ids":{"openalex":"https://openalex.org/W1987356149","doi":"https://doi.org/10.1109/tcbb.2015.2424417","mag":"1987356149","pmid":"https://pubmed.ncbi.nlm.nih.gov/26451830"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2015.2424417","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2015.2424417","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028591679","display_name":"Pietro Lovato","orcid":"https://orcid.org/0000-0002-1002-5434"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pietro Lovato","raw_affiliation_strings":["Department of Computer Science, University of Verona, Verona, Italy","Department of Computer Science \u2013 University of Verona, Verona, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Verona, Verona, Italy","institution_ids":["https://openalex.org/I119439378"]},{"raw_affiliation_string":"Department of Computer Science \u2013 University of Verona, Verona, Italy","institution_ids":["https://openalex.org/I119439378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101510898","display_name":"Alejandro Giorgetti","orcid":"https://orcid.org/0000-0001-8738-6150"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alejandro Giorgetti","raw_affiliation_strings":["Department of Biotechnology, University of Verona, Verona, Italy","Department of Biotechnology; University of Verona; Verona, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, University of Verona, Verona, Italy","institution_ids":["https://openalex.org/I119439378"]},{"raw_affiliation_string":"Department of Biotechnology; University of Verona; Verona, Italy","institution_ids":["https://openalex.org/I119439378"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011831938","display_name":"Manuele Bicego","orcid":"https://orcid.org/0000-0002-1008-3917"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Manuele Bicego","raw_affiliation_strings":["Department of Computer Science, University of Verona, Verona, Italy","Department of Computer Science \u2013 University of Verona, Verona, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Verona, Verona, Italy","institution_ids":["https://openalex.org/I119439378"]},{"raw_affiliation_string":"Department of Computer Science \u2013 University of Verona, Verona, Italy","institution_ids":["https://openalex.org/I119439378"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I119439378"],"apc_list":{"value":2645,"currency":"USD","value_usd":2645},"apc_paid":null,"fwci":0.4128,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.62498042,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"12","issue":"5","first_page":"1193","last_page":"1198"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7309907078742981},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.6909172534942627},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5594127178192139},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4706529676914215},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4422866702079773},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4379178583621979},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4016115069389343},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08197060227394104}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7309907078742981},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.6909172534942627},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5594127178192139},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4706529676914215},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4422866702079773},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4379178583621979},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4016115069389343},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08197060227394104},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2015.2424417","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2015.2424417","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26451830","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26451830","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1577473172","https://openalex.org/W1589362500","https://openalex.org/W1880262756","https://openalex.org/W1968682237","https://openalex.org/W1973714307","https://openalex.org/W1985101496","https://openalex.org/W1990205700","https://openalex.org/W2016522434","https://openalex.org/W2020842694","https://openalex.org/W2026888529","https://openalex.org/W2063829100","https://openalex.org/W2066381476","https://openalex.org/W2084787613","https://openalex.org/W2098386688","https://openalex.org/W2107539619","https://openalex.org/W2115752676","https://openalex.org/W2117502874","https://openalex.org/W2121950477","https://openalex.org/W2124709175","https://openalex.org/W2125725297","https://openalex.org/W2125836290","https://openalex.org/W2134808888","https://openalex.org/W2140244239","https://openalex.org/W2142013909","https://openalex.org/W2145268834","https://openalex.org/W2146628513","https://openalex.org/W2148279834","https://openalex.org/W2153635508","https://openalex.org/W2153939756","https://openalex.org/W2157965775","https://openalex.org/W2158714788","https://openalex.org/W2159849240","https://openalex.org/W2174706414","https://openalex.org/W4231510805","https://openalex.org/W4248892431","https://openalex.org/W6635107798","https://openalex.org/W6639619044","https://openalex.org/W6656951627","https://openalex.org/W6677533783","https://openalex.org/W6680247595"],"related_works":["https://openalex.org/W2295435105","https://openalex.org/W2099030945","https://openalex.org/W2997512100","https://openalex.org/W1485630101","https://openalex.org/W1527191935","https://openalex.org/W2519368194","https://openalex.org/W4287758182","https://openalex.org/W2951006695","https://openalex.org/W3034363135","https://openalex.org/W4294498805"],"abstract_inverted_index":{"Protein":[0],"remote":[1,27],"homology":[2],"detection":[3],"represents":[4],"a":[5,23,89,95,99,108,131,139,152],"crucial":[6],"and":[7],"challenging":[8],"task":[9],"in":[10,17,20],"bioinformatics:":[11],"even":[12,137],"if":[13],"effective":[14],"methods":[15],"appeared":[16],"recent":[18],"years,":[19],"several":[21],"cases":[22],"proper":[24],"characterization":[25],"of":[26,101,111,124,143,154],"evolutionary":[28],"correlation":[29],"can":[30,134,163],"not":[31],"be":[32,39,135,168],"derived.":[33],"In":[34,63],"such":[35,56],"situations,":[36],"it":[37,50,84],"may":[38],"possible":[40,52,86],"that":[41,49,70,130,159,166],"information":[42,59,165],"derived":[43,106],"from":[44,98,107,170],"other":[45],"sources":[46],"helps,":[47],"provided":[48],"is":[51,73,85],"to":[53,87,93],"properly":[54],"integrate":[55],"(even":[57],"partial)":[58],"into":[60],"existing":[61],"models.":[62],"this":[64,71,160],"paper,":[65],"we":[66,81],"provide":[67],"some":[68],"evidence":[69],"route":[72],"feasible:":[74],"inspired":[75],"by":[76,103],"the":[77,118,122,125,155],"multimodal":[78,91,127,161],"retrieval":[79],"literature,":[80],"show":[82],"how":[83],"exploit":[88],"simple":[90],"approach":[92,162],"improve":[94],"model":[96],"learned":[97],"set":[100,110],"sequences,":[102],"using":[104],"knowledge":[105],"partial":[109],"corresponding":[112],"3D":[113],"structures.":[114],"We":[115],"investigate":[116],"(with":[117],"SCOP":[119],"1.53":[120],"benchmark)":[121],"suitability":[123],"proposed":[126],"scheme,":[128],"showing":[129],"beneficial":[132],"effect":[133],"obtained":[136,169],"when":[138],"very":[140],"reduced":[141],"amount":[142],"structures":[144],"are":[145],"available.":[146],"A":[147],"further":[148],"detailed":[149],"analysis":[150],"on":[151],"member":[153],"GPCR":[156],"superfamily":[157],"confirms":[158],"extract":[164],"cannot":[167],"sequence-based":[171],"techniques.":[172]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
