{"id":"https://openalex.org/W2038057370","doi":"https://doi.org/10.1109/tcbb.2015.2424411","title":"ZoomOut: Analyzing Multiple Networks as Single Nodes","display_name":"ZoomOut: Analyzing Multiple Networks as Single Nodes","publication_year":2015,"publication_date":"2015-04-28","ids":{"openalex":"https://openalex.org/W2038057370","doi":"https://doi.org/10.1109/tcbb.2015.2424411","mag":"2038057370","pmid":"https://pubmed.ncbi.nlm.nih.gov/26451833"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2015.2424411","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2015.2424411","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084262707","display_name":"Emmanouil Athanasiadis","orcid":"https://orcid.org/0000-0002-2771-5562"},"institutions":[{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Emmanouil I. Athanasiadis","raw_affiliation_strings":["Center of Systems Biology, Academy of Athens, Soranou Ephessiou, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Systems Biology, Academy of Athens, Soranou Ephessiou, Athens, Greece","institution_ids":["https://openalex.org/I206127235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090967392","display_name":"Marilena M. Bourdakou","orcid":"https://orcid.org/0000-0001-8075-0634"},"institutions":[{"id":"https://openalex.org/I200777214","display_name":"National and Kapodistrian University of Athens","ror":"https://ror.org/04gnjpq42","country_code":"GR","type":"education","lineage":["https://openalex.org/I200777214"]},{"id":"https://openalex.org/I4210093138","display_name":"Biomedical Research Foundation of the Academy of Athens","ror":"https://ror.org/00gban551","country_code":"GR","type":"nonprofit","lineage":["https://openalex.org/I4210093138"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Marilena M. Bourdakou","raw_affiliation_strings":["Center of Systems Biology, Biomedical Research Foundation, Athens, Greece","Department of Informatics and Telecommunications, University of Athens, Ilissia, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Systems Biology, Biomedical Research Foundation, Athens, Greece","institution_ids":["https://openalex.org/I4210093138"]},{"raw_affiliation_string":"Department of Informatics and Telecommunications, University of Athens, Ilissia, Greece","institution_ids":["https://openalex.org/I200777214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058322678","display_name":"George M. Spyrou","orcid":"https://orcid.org/0000-0002-2470-3363"},"institutions":[{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"George M. Spyrou","raw_affiliation_strings":["Center of Systems Biology, Academy of Athens, Soranou Ephessiou, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Systems Biology, Academy of Athens, Soranou Ephessiou, Athens, Greece","institution_ids":["https://openalex.org/I206127235"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2645,"currency":"USD","value_usd":2645},"apc_paid":null,"fwci":0.4128,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.6272227,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"12","issue":"5","first_page":"1213","last_page":"1216"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7650094032287598},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.716326117515564},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6633421182632446},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5344556570053101},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5233849287033081},{"id":"https://openalex.org/keywords/workspace","display_name":"Workspace","score":0.468699187040329},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.43825098872184753},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3405361771583557},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24561652541160583},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21228355169296265}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7650094032287598},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.716326117515564},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6633421182632446},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5344556570053101},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5233849287033081},{"id":"https://openalex.org/C58581272","wikidata":"https://www.wikidata.org/wiki/Q12741163","display_name":"Workspace","level":3,"score":0.468699187040329},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.43825098872184753},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3405361771583557},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24561652541160583},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21228355169296265},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C90509273","wikidata":"https://www.wikidata.org/wiki/Q11012","display_name":"Robot","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2015.2424411","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2015.2424411","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26451833","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26451833","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1504031589","https://openalex.org/W1966327575","https://openalex.org/W2002582122","https://openalex.org/W2010099799","https://openalex.org/W2020925091","https://openalex.org/W2036363967","https://openalex.org/W2044525257","https://openalex.org/W2047031939","https://openalex.org/W2055402385","https://openalex.org/W2056388892","https://openalex.org/W2076513103","https://openalex.org/W2077721508","https://openalex.org/W2078290701","https://openalex.org/W2082199132","https://openalex.org/W2088412871","https://openalex.org/W2105527349","https://openalex.org/W2109529357","https://openalex.org/W2116443392","https://openalex.org/W2120824812","https://openalex.org/W2120865735","https://openalex.org/W2121695897","https://openalex.org/W2135046866","https://openalex.org/W2137799805","https://openalex.org/W2141814885","https://openalex.org/W2149194035","https://openalex.org/W2153490111","https://openalex.org/W2154003061","https://openalex.org/W2155142785","https://openalex.org/W2163296115","https://openalex.org/W2167566248","https://openalex.org/W2615147949","https://openalex.org/W3099289621","https://openalex.org/W6608852248","https://openalex.org/W6630264692"],"related_works":["https://openalex.org/W1992503747","https://openalex.org/W2371519816","https://openalex.org/W2043154226","https://openalex.org/W2369529107","https://openalex.org/W38056103","https://openalex.org/W2109948066","https://openalex.org/W2329043542","https://openalex.org/W1678858522","https://openalex.org/W3195090107","https://openalex.org/W1661511822"],"abstract_inverted_index":{"We":[0],"have":[1],"developed":[2],"ZoomOut":[3,193],"web":[4],"server":[5],"in":[6,44,188],"order":[7],"to":[8,80,116,166],"provide":[9],"the":[10,53,62,64,69,74,90,109,122,147,152,159,174],"research":[11],"community":[12],"with":[13,185],"a":[14,24,45,95,136,182],"tool":[15],"for":[16,86,104],"analysis,":[17],"visualization":[18],"and":[19,37,68,82,169],"clustering":[20,118,149],"of":[21,97,124,154,181],"networks":[22,85,130,143,172],"as":[23,41,102,135,179],"super":[25,46,137],"network,":[26,139],"based":[27,145],"on":[28,146],"their":[29,50],"calculated":[30,101,126,148,187],"feature":[31],"properties.":[32],"Networks":[33,65,71,91,111],"can":[34,131],"be":[35,38,133],"analysed":[36],"further":[39,87],"treated":[40],"single":[42],"nodes":[43],"network":[47,98,184],"that":[48,163],"describe":[49],"relations.":[51],"Specifically,":[52],"user":[54],"interface":[55],"is":[56,158,195],"divided":[57],"into":[58],"three":[59],"main":[60],"sections:":[61],"Workspace,":[63],"Feature":[66,92],"Calculations":[67,93],"Clustering":[70,110],"section.":[72],"In":[73,89,108],"Workspace":[75],"section,":[76,94,112],"users":[77,113,165],"are":[78,100,114,144],"able":[79,115],"upload":[81],"manage":[83],"multiple":[84,171],"processing.":[88],"variety":[96],"properties":[99,186],"features":[103],"each":[105],"uploaded":[106],"network.":[107],"apply":[117],"by":[119],"selecting":[120],"from":[121],"list":[123],"previously":[125],"features.":[127],"All":[128],"processed":[129],"also":[132],"visualized":[134],"interactive":[138],"were":[140],"interconnections":[141],"among":[142],"distances.":[150],"To":[151],"best":[153],"our":[155],"knowledge,":[156],"this":[157],"first":[160],"available":[161,196],"web-service":[162],"allows":[164],"manage,":[167],"quantify":[168],"visualize":[170],"at":[173,197],"same":[175],"time,":[176],"handling":[177],"them":[178],"parts":[180],"larger":[183],"an":[189],"upper":[190],"scale.":[191],"The":[192],"web-application":[194],"http://bioserver-3.bioacademy.gr/Bioserver/ZoomOut.":[198]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
