{"id":"https://openalex.org/W2330697475","doi":"https://doi.org/10.1109/tcbb.2015.2407393","title":"Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding","display_name":"Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding","publication_year":2015,"publication_date":"2015-02-26","ids":{"openalex":"https://openalex.org/W2330697475","doi":"https://doi.org/10.1109/tcbb.2015.2407393","mag":"2330697475","pmid":"https://pubmed.ncbi.nlm.nih.gov/28368812"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2015.2407393","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2015.2407393","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100664608","display_name":"Lin Zhu","orcid":"https://orcid.org/0000-0001-9872-459X"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Zhu","raw_affiliation_strings":["Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Caoan Road 4800, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0001-9872-459X","affiliations":[{"raw_affiliation_string":"Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Caoan Road 4800, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010612686","display_name":"Su-Ping Deng","orcid":"https://orcid.org/0000-0001-6619-6497"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Su-Ping Deng","raw_affiliation_strings":["Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Caoan Road 4800, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Caoan Road 4800, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["College of Computer Sciences and Software Engineering, Shenzhen University, Shenzhen, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Sciences and Software Engineering, Shenzhen University, Shenzhen, Guangzhou, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060381913","display_name":"De-Shuang Huang","orcid":"https://orcid.org/0000-0002-6759-2691"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"De-Shuang Huang","raw_affiliation_strings":["Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Caoan Road 4800, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Caoan Road 4800, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2956,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.62911661,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"14","issue":"2","first_page":"345","last_page":"352"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spurious-relationship","display_name":"Spurious relationship","score":0.831735372543335},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.8128710985183716},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6577634215354919},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6561554074287415},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6458317637443542},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.44525837898254395},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3942510783672333},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3607648015022278},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35947394371032715},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3590642809867859},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21728304028511047},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08285096287727356},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.08253952860832214}],"concepts":[{"id":"https://openalex.org/C97256817","wikidata":"https://www.wikidata.org/wiki/Q1462316","display_name":"Spurious relationship","level":2,"score":0.831735372543335},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.8128710985183716},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6577634215354919},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6561554074287415},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6458317637443542},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.44525837898254395},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3942510783672333},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3607648015022278},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35947394371032715},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3590642809867859},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21728304028511047},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08285096287727356},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.08253952860832214},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2015.2407393","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2015.2407393","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28368812","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28368812","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1069316605","display_name":null,"funder_award_id":"61411140249","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2547174802","display_name":null,"funder_award_id":"61402334","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2755941174","display_name":"\u57fa\u4e8eC-\u7a7a\u95f4\u7406\u8bba\u7684\u57fa\u56e0\u8c03\u63a7\u7f51\u7edc\u6784\u5efa\u4e0e\u89e3\u6790\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61373105","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2938734255","display_name":null,"funder_award_id":"61303111","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3046574419","display_name":null,"funder_award_id":"20120072110040","funder_id":"https://openalex.org/F4320321408","funder_display_name":"Ministry of Education"},{"id":"https://openalex.org/G3263865980","display_name":null,"funder_award_id":"61520106006","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3634863875","display_name":"\u9762\u5411\u590d\u6742\u6570\u636e\u7684\u7a00\u758f\u6d41\u5f62\u5b66\u4e60\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61272333","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3651798849","display_name":"\u57fa\u4e8e\u56fe\u7406\u8bba\u7684\u534a\u76d1\u7763\u56fe\u50cf\u5206\u5272\u4e0e\u5e94\u7528\u7814\u7a76","funder_award_id":"61472173","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3686096675","display_name":null,"funder_award_id":"31571364","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3795684499","display_name":null,"funder_award_id":"61572364","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5368559053","display_name":"\u57fa\u4e8e\u673a\u5668\u5b66\u4e60\u7684\u86cb\u767d\u8d28\u76f8\u4e92\u4f5c\u7528\u4e0e\u529f\u80fd\u9884\u6d4b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61133010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6388758975","display_name":"\u57fa\u4e8e\u591a\u6a21\u6001\u7ade\u4e89\u6c34\u5e73\u96c6\u7684\u590d\u6742\u80cc\u666f\u4e0b\u690d\u7269\u53f6\u7247\u56fe\u50cf\u5206\u5272\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61472280","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6775585475","display_name":null,"funder_award_id":"2014M561513","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G7871801919","display_name":"\u57fa\u4e8e\u7f51\u7edc\u62d3\u6251\u7ed3\u6784\u7684\u86cb\u767d\u8d28\u76f8\u4e92\u4f5c\u7528\u6570\u636e\u8d28\u91cf\u63a7\u5236\u4e0e\u9884\u6d4b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61472282","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321408","display_name":"Ministry of Education","ror":"https://ror.org/01p262204"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":74,"referenced_works":["https://openalex.org/W15465373","https://openalex.org/W1554944419","https://openalex.org/W1587057986","https://openalex.org/W1956694423","https://openalex.org/W1970360171","https://openalex.org/W1980948656","https://openalex.org/W1984514442","https://openalex.org/W1992330798","https://openalex.org/W1993229737","https://openalex.org/W1996816151","https://openalex.org/W2001141328","https://openalex.org/W2030928641","https://openalex.org/W2035245840","https://openalex.org/W2037036397","https://openalex.org/W2038920443","https://openalex.org/W2040411864","https://openalex.org/W2049966951","https://openalex.org/W2050583899","https://openalex.org/W2065304353","https://openalex.org/W2065795346","https://openalex.org/W2080182143","https://openalex.org/W2084619201","https://openalex.org/W2087473883","https://openalex.org/W2094124219","https://openalex.org/W2098132613","https://openalex.org/W2099364528","https://openalex.org/W2099913238","https://openalex.org/W2099918640","https://openalex.org/W2101750553","https://openalex.org/W2103017472","https://openalex.org/W2104315543","https://openalex.org/W2106336008","https://openalex.org/W2107710781","https://openalex.org/W2110096996","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2118169662","https://openalex.org/W2120466000","https://openalex.org/W2122076882","https://openalex.org/W2122836610","https://openalex.org/W2126498993","https://openalex.org/W2128292008","https://openalex.org/W2130139983","https://openalex.org/W2132347401","https://openalex.org/W2134962976","https://openalex.org/W2136316164","https://openalex.org/W2138003801","https://openalex.org/W2140937045","https://openalex.org/W2144344817","https://openalex.org/W2145100112","https://openalex.org/W2147330086","https://openalex.org/W2148762636","https://openalex.org/W2154947819","https://openalex.org/W2155004936","https://openalex.org/W2155320925","https://openalex.org/W2156537287","https://openalex.org/W2159460045","https://openalex.org/W2161984370","https://openalex.org/W2162392441","https://openalex.org/W2166344835","https://openalex.org/W2167869241","https://openalex.org/W2178465836","https://openalex.org/W2521245737","https://openalex.org/W2569283211","https://openalex.org/W2770983033","https://openalex.org/W2798766386","https://openalex.org/W3102855270","https://openalex.org/W3134771994","https://openalex.org/W3199143553","https://openalex.org/W4242209908","https://openalex.org/W4285719527","https://openalex.org/W4300448178","https://openalex.org/W6600623316","https://openalex.org/W6791558059"],"related_works":["https://openalex.org/W2162899405","https://openalex.org/W3113091479","https://openalex.org/W941090075","https://openalex.org/W3134374554","https://openalex.org/W2044987316","https://openalex.org/W2237480245","https://openalex.org/W4311248832","https://openalex.org/W2519167559","https://openalex.org/W2075065631","https://openalex.org/W4288358396"],"abstract_inverted_index":{"In":[0,65],"recent":[1],"years,":[2],"a":[3,31,70],"remarkable":[4],"amount":[5,33],"of":[6,34,42,46,85,92,105,113],"protein-protein":[7],"interaction":[8,83],"(PPI)":[9],"data":[10,28],"are":[11],"being":[12],"available":[13],"owing":[14],"to":[15,51,59,80],"the":[16,24,40,43,82,102,111,129,133],"advance":[17],"made":[18],"in":[19,136],"experimental":[20,118],"high-throughput":[21],"technologies.":[22],"However,":[23],"experimentally":[25],"detected":[26],"PPI":[27,106,122],"usually":[29],"contain":[30],"large":[32],"spurious":[35],"links,":[36],"which":[37],"could":[38],"contaminate":[39],"analysis":[41],"biological":[44,53,63],"significance":[45],"protein":[47,86],"links":[48,139],"and":[49,62,100,124],"lead":[50],"incorrect":[52],"discoveries,":[54],"thereby":[55],"posing":[56],"new":[57,71],"challenges":[58],"both":[60],"computational":[61],"scientists.":[64],"this":[66],"paper,":[67],"we":[68],"develop":[69],"embedding":[72,78,95],"algorithm":[73],"called":[74],"local":[75,103],"similarity":[76],"preserving":[77],"(LSPE)":[79],"rank":[81],"possibility":[84],"links.":[87],"By":[88],"going":[89],"beyond":[90],"limitations":[91],"current":[93],"geometric":[94],"methods":[96,135],"for":[97],"network":[98],"denoising":[99],"emphasizing":[101],"information":[104],"networks,":[107],"LSPE":[108,127],"can":[109],"avoid":[110],"unstableness":[112],"previous":[114],"methods.":[115],"We":[116],"demonstrate":[117],"results":[119],"on":[120],"benchmark":[121],"networks":[123],"show":[125],"that":[126],"was":[128],"overall":[130],"leader,":[131],"outperforming":[132],"state-of-the-art":[134],"topological":[137],"false":[138],"elimination":[140],"problems.":[141]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
