{"id":"https://openalex.org/W2036956006","doi":"https://doi.org/10.1109/tcbb.2014.2377750","title":"Supervised Variational Relevance Learning, An Analytic Geometric Feature Selection with Applications to Omic Datasets","display_name":"Supervised Variational Relevance Learning, An Analytic Geometric Feature Selection with Applications to Omic Datasets","publication_year":2014,"publication_date":"2014-12-06","ids":{"openalex":"https://openalex.org/W2036956006","doi":"https://doi.org/10.1109/tcbb.2014.2377750","mag":"2036956006","pmid":"https://pubmed.ncbi.nlm.nih.gov/26357281"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2014.2377750","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2377750","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054492506","display_name":"Marcelo Boareto","orcid":"https://orcid.org/0000-0002-9915-6376"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marcelo Boareto","raw_affiliation_strings":["Instituto de F\u00edsica, University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","Instituto de F\u00edsica - University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de F\u00edsica, University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Instituto de F\u00edsica - University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048264781","display_name":"J\u00f4natas C\u00e9sar","orcid":null},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jonatas Cesar","raw_affiliation_strings":["Instituto de F\u00edsica, University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","Instituto de F\u00edsica - University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de F\u00edsica, University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Instituto de F\u00edsica - University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112425518","display_name":"Vitor B. P. Leite","orcid":null},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Vitor B.P. Leite","raw_affiliation_strings":["IBILCE, Universidade Estadual Paulista, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brazil","IBILCE, Universidade Estadual Paulista, S\u00e3o Jose do Rio Preto, S\u00e3o Paulo, Brazil#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBILCE, Universidade Estadual Paulista, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I879563668"]},{"raw_affiliation_string":"IBILCE, Universidade Estadual Paulista, S\u00e3o Jose do Rio Preto, S\u00e3o Paulo, Brazil#TAB#","institution_ids":["https://openalex.org/I879563668"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045442193","display_name":"Nestor Caticha","orcid":"https://orcid.org/0000-0002-7446-6765"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Nestor Caticha","raw_affiliation_strings":["Instituto de F\u00edsica, University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","Instituto de F\u00edsica - University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de F\u00edsica, University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Instituto de F\u00edsica - University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2645,"currency":"USD","value_usd":2645},"apc_paid":null,"fwci":1.0485,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.75128192,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"12","issue":"3","first_page":"705","last_page":"711"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12535","display_name":"Machine Learning and Data Classification","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.7314388751983643},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.6849651336669922},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6298471093177795},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6144965887069702},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5852469801902771},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5445137619972229},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48807036876678467},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4835240840911865},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.4757413864135742},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4521298110485077},{"id":"https://openalex.org/keywords/tensor","display_name":"Tensor (intrinsic definition)","score":0.44666796922683716},{"id":"https://openalex.org/keywords/supervised-learning","display_name":"Supervised learning","score":0.43170490860939026},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38147157430648804},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3791738748550415},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.15167051553726196},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.07680264115333557}],"concepts":[{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.7314388751983643},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.6849651336669922},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6298471093177795},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6144965887069702},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5852469801902771},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5445137619972229},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48807036876678467},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4835240840911865},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.4757413864135742},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4521298110485077},{"id":"https://openalex.org/C155281189","wikidata":"https://www.wikidata.org/wiki/Q3518150","display_name":"Tensor (intrinsic definition)","level":2,"score":0.44666796922683716},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.43170490860939026},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38147157430648804},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3791738748550415},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.15167051553726196},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.07680264115333557},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/tcbb.2014.2377750","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2377750","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26357281","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26357281","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:acervodigital.unesp.br:11449/129779","is_oa":false,"landing_page_url":"http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6977958","pdf_url":null,"source":{"id":"https://openalex.org/S4306400256","display_name":"Acervo Digital da Universidade Estadual Paulista (Universidade Estadual Paulista)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115194","host_organization_name":"Funda\u00e7\u00e3o para o Desenvolvimento da UNESP","host_organization_lineage":["https://openalex.org/I4210115194"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"outro"},{"id":"pmh:oai:repositorio.unesp.br:11449/129779","is_oa":false,"landing_page_url":"http://hdl.handle.net/11449/129779","pdf_url":null,"source":{"id":"https://openalex.org/S4377196277","display_name":"UNESP Institutional Repository (S\u00e3o Paulo State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I879563668","host_organization_name":"Universidade Estadual Paulista (Unesp)","host_organization_lineage":["https://openalex.org/I879563668"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320323339","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1540596182","https://openalex.org/W1898424075","https://openalex.org/W1988301066","https://openalex.org/W1991016861","https://openalex.org/W2000687814","https://openalex.org/W2021560851","https://openalex.org/W2039434802","https://openalex.org/W2048053724","https://openalex.org/W2059185913","https://openalex.org/W2083397249","https://openalex.org/W2094150678","https://openalex.org/W2097554668","https://openalex.org/W2098969718","https://openalex.org/W2101234009","https://openalex.org/W2106053110","https://openalex.org/W2121949863","https://openalex.org/W2124704116","https://openalex.org/W2146739527","https://openalex.org/W2157132621","https://openalex.org/W2170989872","https://openalex.org/W4210880854","https://openalex.org/W4246697467","https://openalex.org/W6632267817","https://openalex.org/W6639352576","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W2397288865","https://openalex.org/W2368524271","https://openalex.org/W4247116873","https://openalex.org/W2576709312","https://openalex.org/W2023657818","https://openalex.org/W2392797073","https://openalex.org/W2384907669","https://openalex.org/W2373120800","https://openalex.org/W4388654424","https://openalex.org/W4254477010"],"abstract_inverted_index":{"We":[0,45,76],"introduce":[1],"Supervised":[2],"Variational":[3],"Relevance":[4],"Learning":[5],"(Suvrel),":[6],"a":[7,32,68],"variational":[8,27],"method":[9,28],"to":[10,14,31],"determine":[11],"metric":[12,49,65],"tensors":[13],"define":[15],"distance":[16],"based":[17],"similarity":[18],"in":[19,23],"pattern":[20],"classification,":[21],"inspired":[22],"relevance":[24],"learning.":[25],"The":[26],"is":[29],"applied":[30],"cost":[33,54],"function":[34],"that":[35,51],"penalizes":[36],"large":[37],"intraclass":[38],"distances":[39],"and":[40],"favors":[41],"small":[42],"interclass":[43],"distances.":[44],"find":[46],"analytically":[47],"the":[48,53,57,64,95,101],"tensor":[50,66],"minimizes":[52],"function.":[55],"Preprocessing":[56],"patterns":[58],"by":[59,94],"doing":[60],"linear":[61],"transformations":[62],"using":[63,80],"yields":[67],"dataset":[69],"which":[70],"can":[71],"be":[72],"more":[73],"efficiently":[74],"classified.":[75],"test":[77],"our":[78,106],"methods":[79],"publicly":[81],"available":[82],"datasets,":[83,90],"for":[84],"some":[85],"standard":[86],"classifiers.":[87],"Among":[88],"these":[89],"two":[91],"were":[92],"tested":[93],"MAQC-II":[96],"project":[97],"and,":[98],"even":[99],"without":[100],"use":[102],"of":[103],"further":[104],"preprocessing,":[105],"results":[107],"improve":[108],"on":[109],"their":[110],"performance.":[111]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}