{"id":"https://openalex.org/W2085177807","doi":"https://doi.org/10.1109/tcbb.2014.2369043","title":"Finding Patterns in Protein Sequences by Using a Hybrid Multiobjective Teaching Learning Based Optimization Algorithm","display_name":"Finding Patterns in Protein Sequences by Using a Hybrid Multiobjective Teaching Learning Based Optimization Algorithm","publication_year":2014,"publication_date":"2014-11-10","ids":{"openalex":"https://openalex.org/W2085177807","doi":"https://doi.org/10.1109/tcbb.2014.2369043","mag":"2085177807","pmid":"https://pubmed.ncbi.nlm.nih.gov/26357276"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2014.2369043","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2369043","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111941806","display_name":"David L. Gonz\u00e1lez\u2010\u00c1lvarez","orcid":null},"institutions":[{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"David L. Gonzalez-Alvarez","raw_affiliation_strings":["Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres","[Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres]"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres","institution_ids":["https://openalex.org/I80606768"]},{"raw_affiliation_string":"[Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres]","institution_ids":["https://openalex.org/I80606768"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049408851","display_name":"Miguel A. Vega\u2010Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-3003-758X"},"institutions":[{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel A. Vega-Rodriguez","raw_affiliation_strings":["Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres","[Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres]"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres","institution_ids":["https://openalex.org/I80606768"]},{"raw_affiliation_string":"[Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres]","institution_ids":["https://openalex.org/I80606768"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009435283","display_name":"\u00c1lvaro Rubio\u2010Largo","orcid":"https://orcid.org/0000-0003-2999-4304"},"institutions":[{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alvaro Rubio-Largo","raw_affiliation_strings":["Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres","[Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres]"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres","institution_ids":["https://openalex.org/I80606768"]},{"raw_affiliation_string":"[Department of Computer and Communications Technologies, University of Extremadura, Escuela Polit\u00e9cnica, Campus Universitario s/n, Caceres]","institution_ids":["https://openalex.org/I80606768"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5111941806"],"corresponding_institution_ids":["https://openalex.org/I80606768"],"apc_list":null,"apc_paid":null,"fwci":1.3943,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.80799874,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"12","issue":"3","first_page":"656","last_page":"666"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6389850974082947},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6119518876075745},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6024097204208374},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5798460841178894},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5083991885185242},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.470965176820755},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4402170777320862},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.41872501373291016},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41233786940574646},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3425058126449585},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23695725202560425},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09184384346008301}],"concepts":[{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6389850974082947},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6119518876075745},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6024097204208374},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5798460841178894},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5083991885185242},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.470965176820755},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4402170777320862},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.41872501373291016},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41233786940574646},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3425058126449585},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23695725202560425},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09184384346008301},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2014.2369043","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2369043","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26357276","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26357276","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6600000262260437,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G7364947717","display_name":null,"funder_award_id":"TIN2012-30685","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1497256448","https://openalex.org/W1595498733","https://openalex.org/W1613273921","https://openalex.org/W1968697272","https://openalex.org/W1976927948","https://openalex.org/W1996719109","https://openalex.org/W1997520292","https://openalex.org/W1999284878","https://openalex.org/W2002990906","https://openalex.org/W2003967338","https://openalex.org/W2006311453","https://openalex.org/W2032231928","https://openalex.org/W2037940015","https://openalex.org/W2057508801","https://openalex.org/W2061382789","https://openalex.org/W2067524083","https://openalex.org/W2089783852","https://openalex.org/W2097722519","https://openalex.org/W2101835893","https://openalex.org/W2102941368","https://openalex.org/W2107158607","https://openalex.org/W2107700484","https://openalex.org/W2111359483","https://openalex.org/W2115269634","https://openalex.org/W2128091972","https://openalex.org/W2135729552","https://openalex.org/W2141224484","https://openalex.org/W2147055980","https://openalex.org/W2148208043","https://openalex.org/W2149312834","https://openalex.org/W2151638714","https://openalex.org/W2153522384","https://openalex.org/W2157009395","https://openalex.org/W2158032351","https://openalex.org/W2158266834","https://openalex.org/W2158962723","https://openalex.org/W2159831212","https://openalex.org/W2165212307","https://openalex.org/W2165371353","https://openalex.org/W2168157737","https://openalex.org/W4246565613","https://openalex.org/W6684381553"],"related_works":["https://openalex.org/W2898732673","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W3123203398","https://openalex.org/W2961085424","https://openalex.org/W1972473893","https://openalex.org/W2466435674","https://openalex.org/W2765200542","https://openalex.org/W2394308601","https://openalex.org/W2383918176"],"abstract_inverted_index":{"Proteins":[0],"are":[1],"molecules":[2],"that":[3,121],"form":[4],"the":[5,32,40,43,59,139,143,157,160,176,183,191,194],"mass":[6],"of":[7,34,39,45,61,67,108,118,128,142,152,159,169,193],"living":[8],"beings.":[9],"These":[10],"proteins":[11,46],"exist":[12],"in":[13,24,52,64,106],"dissociated":[14],"forms":[15],"like":[16],"amino-acids":[17],"and":[18,189],"carry":[19],"out":[20],"various":[21],"biological":[22,74,140,200],"functions,":[23],"fact,":[25],"almost":[26],"all":[27],"body":[28],"reactions":[29],"occur":[30],"with":[31,96],"participation":[33],"proteins.":[35],"This":[36,111],"is":[37],"one":[38],"reasons":[41],"why":[42],"analysis":[44],"has":[47],"become":[48],"a":[49,55,65,85,97,116],"major":[50],"issue":[51],"biology.":[53],"In":[54,80],"more":[56],"concrete":[57],"way,":[58],"identification":[60],"conserved":[62],"patterns":[63,105],"set":[66,151],"related":[68,171],"protein":[69,78,109,172],"sequences":[70,173],"can":[71,147],"provide":[72],"relevant":[73],"information":[75],"about":[76],"these":[77],"functions.":[79],"this":[81],"paper,":[82],"we":[83,134,146,163,180],"present":[84],"novel":[86],"algorithm":[87,114],"based":[88,92],"on":[89],"teaching":[90],"learning":[91,130],"optimization":[93],"(TLBO)":[94],"combined":[95],"local":[98],"search":[99],"function":[100],"specialized":[101],"to":[102,138],"predict":[103],"common":[104],"sets":[107],"sequences.":[110],"population-based":[112],"evolutionary":[113],"defines":[115],"group":[117],"individuals":[119],"(solutions)":[120],"enhance":[122],"their":[123],"knowledge":[124],"(quality)":[125],"by":[126,197],"means":[127],"different":[129,170],"stages.":[131],"Thus,":[132],"if":[133],"correctly":[135],"adapt":[136],"it":[137],"context":[141],"mentioned":[144],"problem,":[145],"get":[148],"an":[149],"acceptable":[150],"quality":[153,192],"solutions.":[154],"To":[155],"evaluate":[156],"performance":[158],"proposed":[161],"technique,":[162],"have":[164],"used":[165],"six":[166],"instances":[167],"composed":[168],"obtained":[174],"from":[175],"PROSITE":[177],"database.":[178],"As":[179],"will":[181],"see,":[182],"designed":[184],"approach":[185],"makes":[186],"good":[187],"predictions":[188],"improves":[190],"solutions":[195],"found":[196],"other":[198],"well-known":[199],"tools.":[201]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
