{"id":"https://openalex.org/W2130976058","doi":"https://doi.org/10.1109/tcbb.2014.2366103","title":"ResSeq: Enhancing Short-Read Sequencing Alignment By Rescuing Error-Containing Reads","display_name":"ResSeq: Enhancing Short-Read Sequencing Alignment By Rescuing Error-Containing Reads","publication_year":2014,"publication_date":"2014-10-31","ids":{"openalex":"https://openalex.org/W2130976058","doi":"https://doi.org/10.1109/tcbb.2014.2366103","mag":"2130976058","pmid":"https://pubmed.ncbi.nlm.nih.gov/26357318"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2014.2366103","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2366103","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102953680","display_name":"Weixing Feng","orcid":"https://orcid.org/0000-0002-6466-7918"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weixing Feng","raw_affiliation_strings":["Harbin Engineering University, Harbin, China","Harbin Engineering University  Harbin China"],"raw_orcid":"https://orcid.org/0000-0002-6466-7918","affiliations":[{"raw_affiliation_string":"Harbin Engineering University, Harbin, China","institution_ids":["https://openalex.org/I151727225"]},{"raw_affiliation_string":"Harbin Engineering University  Harbin China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012106629","display_name":"Peichao Sang","orcid":null},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peichao Sang","raw_affiliation_strings":["Harbin Engineering University, Harbin, China","Harbin Engineering University  Harbin China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harbin Engineering University, Harbin, China","institution_ids":["https://openalex.org/I151727225"]},{"raw_affiliation_string":"Harbin Engineering University  Harbin China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037814480","display_name":"Deyuan Lian","orcid":null},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Deyuan Lian","raw_affiliation_strings":["Harbin Engineering University, Harbin, China","Harbin Engineering University  Harbin China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harbin Engineering University, Harbin, China","institution_ids":["https://openalex.org/I151727225"]},{"raw_affiliation_string":"Harbin Engineering University  Harbin China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100931914","display_name":"Yansheng Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yansheng Dong","raw_affiliation_strings":["Harbin Engineering University, Harbin, China","Harbin Engineering University  Harbin China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harbin Engineering University, Harbin, China","institution_ids":["https://openalex.org/I151727225"]},{"raw_affiliation_string":"Harbin Engineering University  Harbin China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005247489","display_name":"Fengfei Song","orcid":null},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fengfei Song","raw_affiliation_strings":["Harbin Engineering University, Harbin, China","Harbin Engineering University  Harbin China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harbin Engineering University, Harbin, China","institution_ids":["https://openalex.org/I151727225"]},{"raw_affiliation_string":"Harbin Engineering University  Harbin China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100457407","display_name":"Meng Li","orcid":"https://orcid.org/0000-0001-8675-0758"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Li","raw_affiliation_strings":["Harbin Engineering University, Harbin, China","Harbin Engineering University  Harbin China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harbin Engineering University, Harbin, China","institution_ids":["https://openalex.org/I151727225"]},{"raw_affiliation_string":"Harbin Engineering University  Harbin China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100608491","display_name":"Bo He","orcid":"https://orcid.org/0000-0002-4560-9747"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"BO He","raw_affiliation_strings":["Harbin Engineering University, Harbin, China","Harbin Engineering University  Harbin China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harbin Engineering University, Harbin, China","institution_ids":["https://openalex.org/I151727225"]},{"raw_affiliation_string":"Harbin Engineering University  Harbin China","institution_ids":["https://openalex.org/I151727225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007795273","display_name":"Fenglin Cao","orcid":"https://orcid.org/0000-0002-6292-6840"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I4210156501","display_name":"First Affiliated Hospital of Harbin Medical University","ror":"https://ror.org/05vy2sc54","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210156501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fenglin Cao","raw_affiliation_strings":["First Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"First Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210156501"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100337366","display_name":"Yunlong Liu","orcid":"https://orcid.org/0000-0003-4650-3466"},"institutions":[{"id":"https://openalex.org/I151727225","display_name":"Harbin Engineering University","ror":"https://ror.org/03x80pn82","country_code":"CN","type":"education","lineage":["https://openalex.org/I151727225"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunlong Liu","raw_affiliation_strings":["Harbin Engineering University, Harbin, China","Harbin Engineering University  Harbin China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harbin Engineering University, Harbin, China","institution_ids":["https://openalex.org/I151727225"]},{"raw_affiliation_string":"Harbin Engineering University  Harbin China","institution_ids":["https://openalex.org/I151727225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2645,"currency":"USD","value_usd":2645},"apc_paid":null,"fwci":0.2597,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.57358509,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"12","issue":"4","first_page":"795","last_page":"798"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.964900016784668,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.964900016784668,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.012799999676644802,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.007499999832361937,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7112791538238525},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5213831067085266},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.5061213374137878},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49421218037605286},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.48189860582351685},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.46622398495674133},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.44856616854667664},{"id":"https://openalex.org/keywords/error-detection-and-correction","display_name":"Error detection and correction","score":0.43517446517944336},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.433575302362442},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42740699648857117},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4133968949317932},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.37575745582580566},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3085571527481079},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2904159426689148},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19764161109924316},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1970452070236206},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.12651890516281128},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08943355083465576}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7112791538238525},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5213831067085266},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.5061213374137878},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49421218037605286},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.48189860582351685},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.46622398495674133},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.44856616854667664},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.43517446517944336},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.433575302362442},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42740699648857117},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4133968949317932},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.37575745582580566},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3085571527481079},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2904159426689148},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19764161109924316},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1970452070236206},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.12651890516281128},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08943355083465576},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2014.2366103","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2366103","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26357318","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26357318","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4860055548","display_name":null,"funder_award_id":"HEUCFX41303","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5355488378","display_name":null,"funder_award_id":"61071174","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G563229854","display_name":null,"funder_award_id":"HEUCFT1102","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7592937411","display_name":null,"funder_award_id":"HEUCFT1302","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8367862733","display_name":null,"funder_award_id":"61471139","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8658925012","display_name":null,"funder_award_id":"61403092","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1966201661","https://openalex.org/W2005100829","https://openalex.org/W2048527505","https://openalex.org/W2058839892","https://openalex.org/W2060416552","https://openalex.org/W2071804601","https://openalex.org/W2073445420","https://openalex.org/W2079662145","https://openalex.org/W2103441770","https://openalex.org/W2113649367","https://openalex.org/W2113843263","https://openalex.org/W2124985265","https://openalex.org/W2131088968","https://openalex.org/W2133980123"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2141411672","https://openalex.org/W2133116680","https://openalex.org/W2111937814","https://openalex.org/W2029514038","https://openalex.org/W1486249959","https://openalex.org/W2141530749","https://openalex.org/W88386512","https://openalex.org/W1977143711","https://openalex.org/W2091678889"],"abstract_inverted_index":{"UNLABELLED:":[0],"Next-generation":[1],"short-read":[2,69],"sequencing":[3,18,70,120],"is":[4,155],"widely":[5],"utilized":[6],"in":[7],"genomic":[8,27,117],"studies.":[9],"Biological":[10],"applications":[11],"require":[12],"an":[13],"alignment":[14,32,154,169],"step":[15],"to":[16,20,63,76],"map":[17],"reads":[19,81,134],"the":[21,66,101,105,109,116,125,130,138,149,160],"reference":[22],"genome,":[23],"before":[24],"acquiring":[25],"expected":[26],"information.":[28],"This":[29,157],"requirement":[30],"makes":[31],"accuracy":[33],"a":[34,55,74,86,92,145,152],"key":[35],"factor":[36],"for":[37,44],"effective":[38],"biological":[39],"interpretation.":[40],"Normally,":[41],"when":[42],"accounting":[43],"measurement":[45],"errors":[46,121],"and":[47,143],"single":[48],"nucleotide":[49],"polymorphisms,":[50],"short":[51],"read":[52],"mappings":[53],"with":[54,83,135],"few":[56],"mismatches":[57],"are":[58],"generally":[59],"considered":[60],"acceptable.":[61],"However,":[62],"further":[64],"improve":[65],"efficiency":[67],"of":[68,89,141,162,175],"alignment,":[71],"we":[72,98,128],"propose":[73],"method":[75],"retrieve":[77,100],"additional":[78],"reliably":[79,164],"aligned":[80,111,165],"(reads":[82],"more":[84,136,163],"than":[85,137],"pre-defined":[87],"number":[88,140],"mismatches),":[90],"using":[91,124],"Bayesian-based":[93],"approach.":[94],"In":[95],"this":[96],"method,":[97],"first":[99],"sequence":[102],"context":[103],"around":[104],"mismatched":[106],"nucleotides":[107],"within":[108],"already":[110],"reads;":[112],"these":[113],"loci":[114],"contain":[115],"features":[118],"where":[119],"occur.":[122],"Then,":[123],"derived":[126],"pattern,":[127],"evaluate":[129],"remaining":[131],"(typically":[132],"discarded)":[133],"allowed":[139],"mismatches,":[142],"calculate":[144],"score":[146],"that":[147,151],"represents":[148],"probability":[150],"specific":[153],"correct.":[156],"strategy":[158],"allows":[159],"extraction":[161],"reads,":[166],"therefore":[167],"improving":[168],"sensitivity.":[170],"IMPLEMENTATION:":[171],"The":[172],"source":[173],"code":[174],"our":[176],"tool,":[177],"ResSeq,":[178],"can":[179],"be":[180],"downloaded":[181],"from:":[182],"https://github.com/hrbeubiocenter/Resseq.":[183]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
