{"id":"https://openalex.org/W2084594458","doi":"https://doi.org/10.1109/tcbb.2014.2351800","title":"Heterogeneous Cloud Framework for Big Data Genome Sequencing","display_name":"Heterogeneous Cloud Framework for Big Data Genome Sequencing","publication_year":2014,"publication_date":"2014-09-12","ids":{"openalex":"https://openalex.org/W2084594458","doi":"https://doi.org/10.1109/tcbb.2014.2351800","mag":"2084594458","pmid":"https://pubmed.ncbi.nlm.nih.gov/26357087"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2014.2351800","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2351800","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011884768","display_name":"Chao Wang","orcid":"https://orcid.org/0000-0002-9403-5575"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Wang","raw_affiliation_strings":["Department of Computer Science, University of Science and Technology of China, Hefei, Anhui, China","Department of Computer Science, University of Science and Technology of China, Hefei, Anhui, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Science and Technology of China, Hefei, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Computer Science, University of Science and Technology of China, Hefei, Anhui, China#TAB#","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100407701","display_name":"Xi Li","orcid":"https://orcid.org/0000-0001-6325-3230"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xi Li","raw_affiliation_strings":["Suzhou Institute of University of Science and Technology of China, Suzhou, Jiangsu, China","Suzhou Institute of University of Science and Technology of China, Suzhou, Jiangsu, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute of University of Science and Technology of China, Suzhou, Jiangsu, China","institution_ids":[]},{"raw_affiliation_string":"Suzhou Institute of University of Science and Technology of China, Suzhou, Jiangsu, China#TAB#","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100629119","display_name":"Peng Chen","orcid":"https://orcid.org/0000-0002-5810-8159"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Chen","raw_affiliation_strings":["Department of Computer Science, University of Science and Technology of China, Hefei, Anhui, China","Department of Computer Science, University of Science and Technology of China, Hefei, Anhui, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Science and Technology of China, Hefei, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Computer Science, University of Science and Technology of China, Hefei, Anhui, China#TAB#","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100693066","display_name":"Aili Wang","orcid":"https://orcid.org/0000-0002-8124-9697"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Aili Wang","raw_affiliation_strings":["School of Software Engineering, University of Science and Technology of China, Suzhou, Jiangsu, China","[School of Software Engineering, University of Science and Technology of China, Suzhou, Jiangsu, China]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software Engineering, University of Science and Technology of China, Suzhou, Jiangsu, China","institution_ids":["https://openalex.org/I308837","https://openalex.org/I126520041"]},{"raw_affiliation_string":"[School of Software Engineering, University of Science and Technology of China, Suzhou, Jiangsu, China]","institution_ids":["https://openalex.org/I308837","https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077322091","display_name":"Xuehai Zhou","orcid":"https://orcid.org/0000-0002-8360-3143"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuehai Zhou","raw_affiliation_strings":["Suzhou Institute of University of Science and Technology of China, Suzhou, Jiangsu, China","Suzhou Institute of University of Science and Technology of China, Suzhou, Jiangsu, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute of University of Science and Technology of China, Suzhou, Jiangsu, China","institution_ids":[]},{"raw_affiliation_string":"Suzhou Institute of University of Science and Technology of China, Suzhou, Jiangsu, China#TAB#","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034667645","display_name":"Hong Yu","orcid":"https://orcid.org/0000-0002-1748-8693"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112230","display_name":"State Key Laboratory of Plant Genomics","ror":"https://ror.org/0205xz563","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210112230"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong Yu","raw_affiliation_strings":["National Center for Plant Gene Research, Chinese Academy of Sciences, Beijing, China","National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Plant Gene Research, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210112230","https://openalex.org/I4210124606","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.2735,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.92719157,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"166","last_page":"178"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.9208897352218628},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8093697428703308},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.6795785427093506},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5799943208694458},{"id":"https://openalex.org/keywords/hardware-acceleration","display_name":"Hardware acceleration","score":0.5780602097511292},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5183761715888977},{"id":"https://openalex.org/keywords/acceleration","display_name":"Acceleration","score":0.515772819519043},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.43921852111816406},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3919510841369629},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.3344624936580658},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.2294062077999115},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.16885149478912354},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11339247226715088}],"concepts":[{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.9208897352218628},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8093697428703308},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.6795785427093506},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5799943208694458},{"id":"https://openalex.org/C13164978","wikidata":"https://www.wikidata.org/wiki/Q600158","display_name":"Hardware acceleration","level":3,"score":0.5780602097511292},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5183761715888977},{"id":"https://openalex.org/C117896860","wikidata":"https://www.wikidata.org/wiki/Q11376","display_name":"Acceleration","level":2,"score":0.515772819519043},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.43921852111816406},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3919510841369629},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.3344624936580658},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.2294062077999115},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.16885149478912354},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11339247226715088},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2014.2351800","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2351800","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26357087","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26357087","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1182658191","display_name":null,"funder_award_id":"61379040","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1795454165","display_name":null,"funder_award_id":"61221062","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2366084430","display_name":null,"funder_award_id":"XDA06010403","funder_id":"https://openalex.org/F4320337515","funder_display_name":"Center for Advanced Study, University of Illinois at Urbana-Champaign"},{"id":"https://openalex.org/G3561269033","display_name":null,"funder_award_id":"61222204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G380041391","display_name":"\u57fa\u4e8e\u4efb\u52a1\u884c\u4e3a\u7279\u5f81\u5206\u6790\u7684\u70ed\u654f\u611f\u64cd\u4f5c\u7cfb\u7edf\u6280\u672f\u7814\u7a76","funder_award_id":"61272131","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4419406104","display_name":null,"funder_award_id":"SBK201240198","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G5340841820","display_name":"\u9762\u5411\u670d\u52a1\u7684\u5f02\u6784\u591a\u6838\u53ef\u91cd\u6784\u7247\u4e0a\u7cfb\u7edf\u4efb\u52a1\u81ea\u52a8\u5e76\u884c\u5316\u673a\u5236\u7814\u7a76","funder_award_id":"61202053","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325599","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09"},{"id":"https://openalex.org/F4320337515","display_name":"Center for Advanced Study, University of Illinois at Urbana-Champaign","ror":"https://ror.org/047426m28"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1536229846","https://openalex.org/W1608326296","https://openalex.org/W1911613893","https://openalex.org/W1977512185","https://openalex.org/W1982420044","https://openalex.org/W1982565841","https://openalex.org/W1987426253","https://openalex.org/W1992519395","https://openalex.org/W1999887682","https://openalex.org/W2011652244","https://openalex.org/W2013733655","https://openalex.org/W2037113830","https://openalex.org/W2038102222","https://openalex.org/W2039824819","https://openalex.org/W2046626049","https://openalex.org/W2049650913","https://openalex.org/W2072193858","https://openalex.org/W2080038972","https://openalex.org/W2082346787","https://openalex.org/W2087064593","https://openalex.org/W2096220103","https://openalex.org/W2099964107","https://openalex.org/W2103441770","https://openalex.org/W2111305378","https://openalex.org/W2112113834","https://openalex.org/W2115069592","https://openalex.org/W2116563953","https://openalex.org/W2118681606","https://openalex.org/W2119501327","https://openalex.org/W2120641102","https://openalex.org/W2121383574","https://openalex.org/W2121762798","https://openalex.org/W2124985265","https://openalex.org/W2127380362","https://openalex.org/W2131473773","https://openalex.org/W2137001401","https://openalex.org/W2143599190","https://openalex.org/W2146052712","https://openalex.org/W2146496959","https://openalex.org/W2154826966","https://openalex.org/W2156976066","https://openalex.org/W2158322625","https://openalex.org/W2161488606","https://openalex.org/W2166621589","https://openalex.org/W2173213060","https://openalex.org/W4247053599","https://openalex.org/W6639982511"],"related_works":["https://openalex.org/W1509211761","https://openalex.org/W2391299576","https://openalex.org/W1992586242","https://openalex.org/W2133693067","https://openalex.org/W1531488649","https://openalex.org/W1585350690","https://openalex.org/W2366027386","https://openalex.org/W2582456645","https://openalex.org/W2479014312","https://openalex.org/W2074831258"],"abstract_inverted_index":{"The":[0,73],"next":[1,177],"generation":[2,178],"genome":[3,131],"sequencing":[4,132,179],"problem":[5,180],"with":[6,66,181],"short":[7,89],"(long)":[8],"reads":[9,91],"is":[10],"an":[11],"emerging":[12],"field":[13],"in":[14],"numerous":[15],"scientific":[16,30],"and":[17,25,34,43,54,78,101,160,184],"big":[18],"data":[19,23,52],"research":[20],"domains.":[21],"However,":[22],"sizes":[24],"ease":[26],"of":[27,75,87],"access":[28],"for":[29,128],"researchers":[31],"are":[32,163],"growing":[33],"most":[35],"current":[36],"methodologies":[37],"rely":[38],"on":[39,69,110,145,153],"one":[40],"acceleration":[41,64,77],"approach":[42],"so":[44],"cannot":[45],"meet":[46],"the":[47,85,99,126,146,170,176],"requirements":[48],"imposed":[49],"by":[50],"explosive":[51],"scales":[53],"complexities.":[55],"In":[56],"this":[57],"paper,":[58],"we":[59,104,139],"propose":[60],"a":[61,93,106,111,136,142],"novel":[62],"FPGA-based":[63],"solution":[65],"MapReduce":[67,79,112],"framework":[68],"multiple":[70],"hardware":[71,76,143,161,186],"accelerators.":[72],"combination":[74],"execution":[80],"flow":[81],"could":[82,173],"greatly":[83],"accelerate":[84,175],"task":[86],"aligning":[88],"length":[90],"to":[92,124],"known":[94],"reference":[95],"genome.":[96],"To":[97],"evaluate":[98],"performance":[100],"other":[102],"metrics,":[103],"conducted":[105],"theoretical":[107],"speedup":[108,127],"analysis":[109],"programming":[113],"platform,":[114],"which":[115],"demonstrates":[116],"that":[117,169],"our":[118],"proposed":[119,171],"architecture":[120],"have":[121,140],"efficient":[122],"potential":[123],"improve":[125],"large":[129],"scale":[130],"applications.":[133],"Also,":[134],"as":[135],"practical":[137],"study,":[138],"built":[141],"prototype":[144],"real":[147],"Xilinx":[148],"FPGA":[149],"chip.":[150],"Significant":[151],"metrics":[152],"speedup,":[154],"sensitivity,":[155],"mapping":[156],"quality,":[157],"error":[158],"rate,":[159],"cost":[162],"evaluated,":[164],"respectively.":[165],"Experimental":[166],"results":[167],"demonstrate":[168],"platform":[172],"efficiently":[174],"satisfactory":[182],"accuracy":[183],"acceptable":[185],"cost.":[187]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
