{"id":"https://openalex.org/W1988563898","doi":"https://doi.org/10.1109/tcbb.2014.2338308","title":"Identification of Functionally Related Enzymes by Learning-to-Rank Methods","display_name":"Identification of Functionally Related Enzymes by Learning-to-Rank Methods","publication_year":2014,"publication_date":"2014-07-11","ids":{"openalex":"https://openalex.org/W1988563898","doi":"https://doi.org/10.1109/tcbb.2014.2338308","mag":"1988563898","pmid":"https://pubmed.ncbi.nlm.nih.gov/26357052"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2014.2338308","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2338308","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079406761","display_name":"Michiel Stock","orcid":"https://orcid.org/0000-0003-0903-6061"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Michiel Stock","raw_affiliation_strings":["Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Coupure links 653, 9000 Ghent, Belgium","The Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Coupure links 653, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"The Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019483146","display_name":"Thomas Fober","orcid":null},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Fober","raw_affiliation_strings":["Department of Mathematics and Computer Science, Philipps-Universit\u00e4t of Marburg, Hans-Meerwein-Stra\u00dfe 6, D-35032 Marburg, Germany","The Department of Mathematics and Computer Science, Philipps-Universit\u00e4t of Marburg, Marburg, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, Philipps-Universit\u00e4t of Marburg, Hans-Meerwein-Stra\u00dfe 6, D-35032 Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]},{"raw_affiliation_string":"The Department of Mathematics and Computer Science, Philipps-Universit\u00e4t of Marburg, Marburg, Germany#TAB#","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059439673","display_name":"Eyke H\u00fcllermeier","orcid":"https://orcid.org/0000-0002-9944-4108"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Eyke Hullermeier","raw_affiliation_strings":["Department of Mathematics and Computer Science, Philipps-Universit\u00e4t of Marburg, Hans-Meerwein-Stra\u00dfe 6, D-35032 Marburg, Germany","The Department of Mathematics and Computer Science, Philipps-Universit\u00e4t of Marburg, Marburg, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, Philipps-Universit\u00e4t of Marburg, Hans-Meerwein-Stra\u00dfe 6, D-35032 Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]},{"raw_affiliation_string":"The Department of Mathematics and Computer Science, Philipps-Universit\u00e4t of Marburg, Marburg, Germany#TAB#","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061978076","display_name":"Serghei Glinca","orcid":"https://orcid.org/0000-0002-9634-9033"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Serghei Glinca","raw_affiliation_strings":["Department of Pharmacy, Philipps-Universit\u00e4t of Marburg, Marbacher Weg 6-10, D-35032 Marburg, Germany","The Department of Pharmacy, Philipps-Universit\u00e4t of Marburg, Marburg, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, Philipps-Universit\u00e4t of Marburg, Marbacher Weg 6-10, D-35032 Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]},{"raw_affiliation_string":"The Department of Pharmacy, Philipps-Universit\u00e4t of Marburg, Marburg, Germany#TAB#","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005420915","display_name":"G. Klebe","orcid":"https://orcid.org/0000-0002-4913-390X"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gerhard Klebe","raw_affiliation_strings":["Department of Pharmacy, Philipps-Universit\u00e4t of Marburg, Marbacher Weg 6-10, D-35032 Marburg, Germany","The Department of Pharmacy, Philipps-Universit\u00e4t of Marburg, Marburg, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, Philipps-Universit\u00e4t of Marburg, Marbacher Weg 6-10, D-35032 Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]},{"raw_affiliation_string":"The Department of Pharmacy, Philipps-Universit\u00e4t of Marburg, Marburg, Germany#TAB#","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021993986","display_name":"Tapio Pahikkala","orcid":"https://orcid.org/0000-0003-4183-2455"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tapio Pahikkala","raw_affiliation_strings":["Department of Information Technology and the Turku Centre for Computer Science, University of Turku, Joukahaisenkatu 3-5 B, 20520 Turku, Finland","The Department of Information Technology and The Turku Centre for Computer Science, University of Turku, Turku, Finland#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Technology and the Turku Centre for Computer Science, University of Turku, Joukahaisenkatu 3-5 B, 20520 Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"raw_affiliation_string":"The Department of Information Technology and The Turku Centre for Computer Science, University of Turku, Turku, Finland#TAB#","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084144711","display_name":"Antti Airola","orcid":"https://orcid.org/0000-0002-1010-4386"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Antti Airola","raw_affiliation_strings":["Department of Information Technology and the Turku Centre for Computer Science, University of Turku, Joukahaisenkatu 3-5 B, 20520 Turku, Finland","The Department of Information Technology and The Turku Centre for Computer Science, University of Turku, Turku, Finland#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Technology and the Turku Centre for Computer Science, University of Turku, Joukahaisenkatu 3-5 B, 20520 Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"raw_affiliation_string":"The Department of Information Technology and The Turku Centre for Computer Science, University of Turku, Turku, Finland#TAB#","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012437460","display_name":"Bernard De Baets","orcid":"https://orcid.org/0000-0002-3876-620X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bernard De Baets","raw_affiliation_strings":["Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Coupure links 653, 9000 Ghent, Belgium","The Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Coupure links 653, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"The Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028945060","display_name":"Willem Waegeman","orcid":"https://orcid.org/0000-0002-5950-3003"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Willem Waegeman","raw_affiliation_strings":["Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Coupure links 653, 9000 Ghent, Belgium","The Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Coupure links 653, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"The Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2599,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.55193301,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"11","issue":"6","first_page":"1157","last_page":"1169"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6436063051223755},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6113837957382202},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5934702754020691},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5376113653182983},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4878554344177246},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4540283977985382},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.45157119631767273},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4344664514064789},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.4201841354370117},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.4140133857727051},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3918883502483368},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36348533630371094},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3449132442474365},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32425862550735474},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2343679666519165},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17268899083137512},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.0804097056388855},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07082274556159973}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6436063051223755},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6113837957382202},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5934702754020691},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5376113653182983},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4878554344177246},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4540283977985382},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.45157119631767273},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4344664514064789},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.4201841354370117},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.4140133857727051},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3918883502483368},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36348533630371094},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3449132442474365},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32425862550735474},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2343679666519165},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17268899083137512},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0804097056388855},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07082274556159973},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2014.2338308","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2014.2338308","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26357052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26357052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:archive.ugent.be:5946211","is_oa":false,"landing_page_url":"http://hdl.handle.net/1854/LU-5946211","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1545-5963","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2154105304","display_name":null,"funder_award_id":"128061","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G6890761459","display_name":null,"funder_award_id":"134020","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320322603","display_name":"Universiteit Gent","ror":"https://ror.org/00cv9y106"},{"id":"https://openalex.org/F4320330692","display_name":"Zentrum f\u00fcr Synthetische Mikrobiologie","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":84,"referenced_works":["https://openalex.org/W164093228","https://openalex.org/W1479807131","https://openalex.org/W1486817521","https://openalex.org/W1495789144","https://openalex.org/W1530397352","https://openalex.org/W1576660662","https://openalex.org/W1585634379","https://openalex.org/W1600601971","https://openalex.org/W1765545080","https://openalex.org/W1861597095","https://openalex.org/W1912497050","https://openalex.org/W1976576119","https://openalex.org/W1979414133","https://openalex.org/W1994787881","https://openalex.org/W1998931880","https://openalex.org/W2003165115","https://openalex.org/W2007978853","https://openalex.org/W2010541316","https://openalex.org/W2011986160","https://openalex.org/W2012459404","https://openalex.org/W2014306710","https://openalex.org/W2016521878","https://openalex.org/W2017661263","https://openalex.org/W2021630848","https://openalex.org/W2030811942","https://openalex.org/W2031291897","https://openalex.org/W2031771080","https://openalex.org/W2042647264","https://openalex.org/W2046664527","https://openalex.org/W2053080554","https://openalex.org/W2055043387","https://openalex.org/W2066199490","https://openalex.org/W2069870183","https://openalex.org/W2070771761","https://openalex.org/W2074888914","https://openalex.org/W2081534370","https://openalex.org/W2082360590","https://openalex.org/W2084200259","https://openalex.org/W2085176241","https://openalex.org/W2085833518","https://openalex.org/W2086380285","https://openalex.org/W2087064593","https://openalex.org/W2092631328","https://openalex.org/W2093308470","https://openalex.org/W2095279025","https://openalex.org/W2097108043","https://openalex.org/W2097186405","https://openalex.org/W2099438806","https://openalex.org/W2099862356","https://openalex.org/W2100494857","https://openalex.org/W2112492958","https://openalex.org/W2115451817","https://openalex.org/W2115595474","https://openalex.org/W2117319571","https://openalex.org/W2120138074","https://openalex.org/W2122365200","https://openalex.org/W2126255586","https://openalex.org/W2131260462","https://openalex.org/W2131456688","https://openalex.org/W2133075481","https://openalex.org/W2135140174","https://openalex.org/W2136134567","https://openalex.org/W2136567909","https://openalex.org/W2139039274","https://openalex.org/W2141007997","https://openalex.org/W2146940292","https://openalex.org/W2149255331","https://openalex.org/W2150065588","https://openalex.org/W2152443870","https://openalex.org/W2158714788","https://openalex.org/W2159156271","https://openalex.org/W2161311439","https://openalex.org/W2170960297","https://openalex.org/W2988119488","https://openalex.org/W3119651796","https://openalex.org/W3199143553","https://openalex.org/W4236236547","https://openalex.org/W4285719527","https://openalex.org/W4300913086","https://openalex.org/W4300958603","https://openalex.org/W6606724968","https://openalex.org/W6635077098","https://openalex.org/W6635819709","https://openalex.org/W6680273311"],"related_works":["https://openalex.org/W2188500270","https://openalex.org/W2303858293","https://openalex.org/W2152992791","https://openalex.org/W2915512527","https://openalex.org/W2798198862","https://openalex.org/W51364034","https://openalex.org/W2798997222","https://openalex.org/W2793336762","https://openalex.org/W2091548507","https://openalex.org/W3160516639"],"abstract_inverted_index":{"Enzyme":[0,158],"sequences":[1],"and":[2,114,182],"structures":[3,43],"are":[4,144],"routinely":[5],"used":[6],"in":[7,19,40,54,60,123,197],"the":[8,50,58,61,72,103,111,115,141,157,168,198],"biological":[9,73,116],"sciences":[10],"as":[11],"queries":[12],"to":[13,66,125,146],"search":[14,51],"for":[15,38,163,185],"functionally":[16],"related":[17],"enzymes":[18,35,59,78,166],"online":[20],"databases.":[21],"To":[22],"this":[23,82],"end,":[24],"one":[25],"usually":[26],"departs":[27],"from":[28,63],"some":[29],"notion":[30],"of":[31,57,75,88,105,110,118,173,176,188,200],"similarity,":[32],"comparing":[33],"two":[34],"by":[36,95],"looking":[37],"correspondences":[39],"their":[41],"sequences,":[42],"or":[44,149],"surfaces.":[45],"For":[46],"a":[47,55,174,180,186],"given":[48],"query,":[49],"operation":[52],"results":[53,172],"ranking":[56],"database,":[62],"very":[64],"similar":[65],"dissimilar":[67],"enzymes,":[68],"while":[69],"information":[70,193],"about":[71,194],"function":[74,117],"annotated":[76,119,132,165],"database":[77],"is":[79,122],"ignored.":[80],"In":[81],"work,":[83],"we":[84],"show":[85],"that":[86,89,191],"rankings":[87],"kind":[90],"can":[91],"be":[92],"substantially":[93],"improved":[94],"applying":[96],"kernel-based":[97],"learning":[98],"algorithms.":[99],"This":[100,121],"approach":[101],"enables":[102],"detection":[104],"statistical":[106],"dependencies":[107],"between":[108],"similarities":[109],"active":[112,142],"cleft":[113,143],"enzymes.":[120,201],"contrast":[124],"search-based":[126],"approaches,":[127],"which":[128],"do":[129],"not":[130],"take":[131],"training":[133,169],"data":[134],"into":[135],"account.":[136],"Similarity":[137],"measures":[138,151,190],"based":[139],"on":[140],"known":[145],"outperform":[147],"sequence-based":[148],"structure-based":[150],"under":[152],"certain":[153],"conditions.":[154],"We":[155],"consider":[156],"Commission":[159],"(EC)":[160],"classification":[161],"hierarchy":[162],"obtaining":[164],"during":[167],"phase.":[170],"The":[171],"set":[175,187],"sizeable":[177],"experiments":[178],"indicate":[179],"consistent":[181],"significant":[183],"improvement":[184],"similarity":[189],"exploit":[192],"small":[195],"cavities":[196],"surface":[199]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
