{"id":"https://openalex.org/W1709660540","doi":"https://doi.org/10.1109/tcbb.2013.2297915","title":"Detecting Protein Complexes Based on Uncertain Graph Model","display_name":"Detecting Protein Complexes Based on Uncertain Graph Model","publication_year":2014,"publication_date":"2014-01-31","ids":{"openalex":"https://openalex.org/W1709660540","doi":"https://doi.org/10.1109/tcbb.2013.2297915","mag":"1709660540","pmid":"https://pubmed.ncbi.nlm.nih.gov/26356017"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2013.2297915","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2013.2297915","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054410805","display_name":"Bihai Zhao","orcid":"https://orcid.org/0000-0003-0870-7468"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bihai Zhao","raw_affiliation_strings":["School of Information Science and Engineering Central South University, Changsha, China","[School of Information Science and Engineering, Central South University, ChangSha, China]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"[School of Information Science and Engineering, Central South University, ChangSha, China]","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Information Science and Engineering Central South University, Changsha, China","[School of Information Science and Engineering, Central South University, ChangSha, China]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"[School of Information Science and Engineering, Central South University, ChangSha, China]","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Information Science and Engineering Central South University, Changsha, China","[School of Information Science and Engineering, Central South University, ChangSha, China]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"[School of Information Science and Engineering, Central South University, ChangSha, China]","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","[Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"[Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada]","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101465265","display_name":"Yi Pan","orcid":"https://orcid.org/0000-0002-2766-3096"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yi Pan","raw_affiliation_strings":["School of Information Science and Engineering Central South University, Changsha, China","School of Information Science and Engineering, Central South University, Changsha, China and Department of Computer Science, Georgia State University, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China and Department of Computer Science, Georgia State University, Atlanta, GA","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":7.2785,"has_fulltext":false,"cited_by_count":98,"citation_normalized_percentile":{"value":0.98029625,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"11","issue":"3","first_page":"486","last_page":"497"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5834284424781799},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.534892737865448},{"id":"https://openalex.org/keywords/degree","display_name":"Degree (music)","score":0.47127196192741394},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.45913130044937134},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4557388424873352},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4399797320365906},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36301422119140625},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.3544729948043823},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33121755719184875},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2333359718322754},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1754472553730011},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1491604745388031}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5834284424781799},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.534892737865448},{"id":"https://openalex.org/C2775997480","wikidata":"https://www.wikidata.org/wiki/Q586277","display_name":"Degree (music)","level":2,"score":0.47127196192741394},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.45913130044937134},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4557388424873352},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4399797320365906},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36301422119140625},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.3544729948043823},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33121755719184875},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2333359718322754},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1754472553730011},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1491604745388031},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2013.2297915","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2013.2297915","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26356017","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26356017","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334924","display_name":"Program for New Century Excellent Talents in University","ror":"https://ror.org/01mv9t934"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W177104057","https://openalex.org/W186643664","https://openalex.org/W263602979","https://openalex.org/W1510148020","https://openalex.org/W1527927437","https://openalex.org/W1575542444","https://openalex.org/W1576210418","https://openalex.org/W1925105768","https://openalex.org/W1979899431","https://openalex.org/W1980578041","https://openalex.org/W1986214964","https://openalex.org/W2027439534","https://openalex.org/W2037036397","https://openalex.org/W2046656611","https://openalex.org/W2050716003","https://openalex.org/W2050721857","https://openalex.org/W2051826627","https://openalex.org/W2062497124","https://openalex.org/W2066303519","https://openalex.org/W2082565035","https://openalex.org/W2107067224","https://openalex.org/W2107340752","https://openalex.org/W2113553645","https://openalex.org/W2113654464","https://openalex.org/W2116117181","https://openalex.org/W2117403572","https://openalex.org/W2124166542","https://openalex.org/W2124354935","https://openalex.org/W2124463526","https://openalex.org/W2133894503","https://openalex.org/W2136850043","https://openalex.org/W2139854834","https://openalex.org/W2140280811","https://openalex.org/W2140462113","https://openalex.org/W2145100112","https://openalex.org/W2146447390","https://openalex.org/W2151683280","https://openalex.org/W2155320925","https://openalex.org/W2159006461","https://openalex.org/W2159675211","https://openalex.org/W2159710443","https://openalex.org/W2160313295","https://openalex.org/W2164928285","https://openalex.org/W2165533101","https://openalex.org/W2166330697","https://openalex.org/W2167869241","https://openalex.org/W2170858229","https://openalex.org/W2171430493","https://openalex.org/W2172049947","https://openalex.org/W2373591455","https://openalex.org/W2403079677","https://openalex.org/W3141450131","https://openalex.org/W6645546049","https://openalex.org/W6657524342"],"related_works":["https://openalex.org/W1987705964","https://openalex.org/W2414873431","https://openalex.org/W2172097289","https://openalex.org/W4384303460","https://openalex.org/W1987363726","https://openalex.org/W2949751838","https://openalex.org/W2099913238","https://openalex.org/W82005175","https://openalex.org/W2146108849","https://openalex.org/W2145100112"],"abstract_inverted_index":{"Advanced":[0],"biological":[1],"technologies":[2],"are":[3,56],"producing":[4],"large-scale":[5],"protein-protein":[6],"interaction":[7],"(PPI)":[8],"data":[9],"at":[10],"an":[11,110],"ever":[12],"increasing":[13],"pace,":[14],"which":[15],"enable":[16],"us":[17],"to":[18,81,94,121,140,163],"identify":[19],"protein":[20,26,48,100],"complexes":[21,49,123],"from":[22,124],"PPI":[23,106,125,166,193],"networks.":[24,126,167,194],"Pair-wise":[25],"interactions":[27],"can":[28,185],"be":[29],"modeled":[30],"as":[31],"a":[32,87,99,102,105,143,146],"graph,":[33],"where":[34],"vertices":[35],"represent":[36,40],"proteins":[37],"and":[38,101,151,158,181],"edges":[39,55],"PPIs.":[41],"However":[42],"most":[43],"of":[44,78,86,91],"current":[45],"algorithms":[46,162],"detect":[47,122],"based":[50,116],"on":[51,69,117],"deterministic":[52],"graphs,":[53],"whose":[54],"either":[57],"present":[58],"or":[59],"absent.":[60],"Neighboring":[61],"information":[62],"is":[63,138],"neglected":[64],"in":[65,104,192],"these":[66],"methods.":[67],"Based":[68],"the":[70,76,83,89,96,130,135,159,178,182],"uncertain":[71,118],"graph":[72,119],"model,":[73],"we":[74],"propose":[75],"concept":[77,90],"expected":[79,131],"density":[80,84,132],"assess":[82],"degree":[85,93,137],"subgraph,":[88],"relative":[92,136],"describe":[95],"relationship":[97],"between":[98],"subgraph":[103,144],"network.":[107],"We":[108,154],"develop":[109],"algorithm":[111],"called":[112],"DCU":[113],"(detecting":[114],"complex":[115,147],"model)":[120],"In":[127],"our":[128,156,172],"method,":[129],"combined":[133],"with":[134,148],"used":[139],"determine":[141],"whether":[142],"represents":[145],"high":[149],"cohesion":[150],"low":[152],"coupling.":[153],"apply":[155],"method":[157,173],"existing":[160],"competing":[161],"two":[164],"yeast":[165],"Experimental":[168],"results":[169],"indicate":[170],"that":[171],"performs":[174],"significantly":[175],"better":[176],"than":[177],"state-of-the-art":[179],"methods":[180],"proposed":[183],"model":[184],"provide":[186],"more":[187],"insights":[188],"for":[189],"future":[190],"study":[191]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":14}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
