{"id":"https://openalex.org/W2113553645","doi":"https://doi.org/10.1109/tcbb.2013.2295318","title":"Predicting Essential Proteins Based on Weighted Degree Centrality","display_name":"Predicting Essential Proteins Based on Weighted Degree Centrality","publication_year":2014,"publication_date":"2014-01-31","ids":{"openalex":"https://openalex.org/W2113553645","doi":"https://doi.org/10.1109/tcbb.2013.2295318","mag":"2113553645","pmid":"https://pubmed.ncbi.nlm.nih.gov/26355787"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2013.2295318","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2013.2295318","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077883887","display_name":"Xiwei Tang","orcid":"https://orcid.org/0009-0009-4217-2074"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I916048824","display_name":"Hunan First Normal University","ror":"https://ror.org/00s9d1a36","country_code":"CN","type":"education","lineage":["https://openalex.org/I916048824"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiwei Tang","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, China","School of Information Science and Engineering, Central South University, Changsha, China and Department of Information Science and Engineering, Hunan First Normal University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China and Department of Information Science and Engineering, Hunan First Normal University, Changsha, China","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I916048824"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438355","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0002-7838-5575"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, China","School of Information Science & Engineering, Central South University, Changsha 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science & Engineering, Central South University, Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033371544","display_name":"Jiancheng Zhong","orcid":"https://orcid.org/0000-0001-6334-9304"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiancheng Zhong","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, China","School of Information Science & Engineering, Central South University, Changsha 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science & Engineering, Central South University, Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101465265","display_name":"Yi Pan","orcid":"https://orcid.org/0000-0002-2766-3096"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yi Pan","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, GA","School of Information Science and Engineering, Central South University, Changsha, China and Department of Computer Science, Georgia StateUniversity, Atlanta, GA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, China and Department of Computer Science, Georgia StateUniversity, Atlanta, GA#TAB#","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":7.1484,"has_fulltext":false,"cited_by_count":201,"citation_normalized_percentile":{"value":0.98007027,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"11","issue":"2","first_page":"407","last_page":"418"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.8172422647476196},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5776814818382263},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5522079467773438},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4795912802219391},{"id":"https://openalex.org/keywords/clustering-coefficient","display_name":"Clustering coefficient","score":0.47789275646209717},{"id":"https://openalex.org/keywords/pearson-product-moment-correlation-coefficient","display_name":"Pearson product-moment correlation coefficient","score":0.4444288909435272},{"id":"https://openalex.org/keywords/value","display_name":"Value (mathematics)","score":0.422710120677948},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34051430225372314},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26601937413215637},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2348923683166504},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22691446542739868},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21527275443077087},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.15885353088378906}],"concepts":[{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.8172422647476196},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5776814818382263},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5522079467773438},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4795912802219391},{"id":"https://openalex.org/C22047676","wikidata":"https://www.wikidata.org/wiki/Q898680","display_name":"Clustering coefficient","level":3,"score":0.47789275646209717},{"id":"https://openalex.org/C55078378","wikidata":"https://www.wikidata.org/wiki/Q1136628","display_name":"Pearson product-moment correlation coefficient","level":2,"score":0.4444288909435272},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.422710120677948},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34051430225372314},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26601937413215637},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2348923683166504},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22691446542739868},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21527275443077087},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.15885353088378906}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2013.2295318","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2013.2295318","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26355787","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26355787","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310607","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18"},{"id":"https://openalex.org/F4320321393","display_name":"Hunan Normal University","ror":"https://ror.org/053w1zy07"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"},{"id":"https://openalex.org/F4320322191","display_name":"Hunan University","ror":"https://ror.org/05htk5m33"},{"id":"https://openalex.org/F4320322392","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549"},{"id":"https://openalex.org/F4320332169","display_name":"Directorate for Computer and Information Science and Engineering","ror":"https://ror.org/025kzpk63"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1503938960","https://openalex.org/W1531182450","https://openalex.org/W1630454103","https://openalex.org/W1969545117","https://openalex.org/W1970156673","https://openalex.org/W1971937094","https://openalex.org/W1972238714","https://openalex.org/W1980922062","https://openalex.org/W1986310535","https://openalex.org/W1988496202","https://openalex.org/W1995818082","https://openalex.org/W1996612368","https://openalex.org/W2005740247","https://openalex.org/W2006683252","https://openalex.org/W2007245700","https://openalex.org/W2010000580","https://openalex.org/W2013502943","https://openalex.org/W2017975254","https://openalex.org/W2022927460","https://openalex.org/W2025971310","https://openalex.org/W2031119996","https://openalex.org/W2036799174","https://openalex.org/W2037036397","https://openalex.org/W2038492783","https://openalex.org/W2038920443","https://openalex.org/W2046424455","https://openalex.org/W2056196348","https://openalex.org/W2064901764","https://openalex.org/W2072602645","https://openalex.org/W2084619201","https://openalex.org/W2087194317","https://openalex.org/W2088590769","https://openalex.org/W2089125183","https://openalex.org/W2095612544","https://openalex.org/W2100628741","https://openalex.org/W2105089945","https://openalex.org/W2108159440","https://openalex.org/W2109886974","https://openalex.org/W2112657663","https://openalex.org/W2119043225","https://openalex.org/W2119114096","https://openalex.org/W2121507105","https://openalex.org/W2124166542","https://openalex.org/W2124540200","https://openalex.org/W2130790725","https://openalex.org/W2130879396","https://openalex.org/W2142437744","https://openalex.org/W2146447390","https://openalex.org/W2148581734","https://openalex.org/W2149676146","https://openalex.org/W2152285853","https://openalex.org/W2154600255","https://openalex.org/W2159767718","https://openalex.org/W2161257056","https://openalex.org/W2162891889","https://openalex.org/W2167869241","https://openalex.org/W6653629126"],"related_works":["https://openalex.org/W3034016839","https://openalex.org/W3167829529","https://openalex.org/W3127706071","https://openalex.org/W2132221552","https://openalex.org/W1935502456","https://openalex.org/W2756426839","https://openalex.org/W2387405106","https://openalex.org/W2794272206","https://openalex.org/W2085268214","https://openalex.org/W2113553645"],"abstract_inverted_index":{"Essential":[0],"proteins":[1,29,114,237],"are":[2,14,133,143,159],"vital":[3],"for":[4],"an":[5,178,231],"organism's":[6],"viability":[7],"under":[8],"a":[9,88],"variety":[10],"of":[11,27,42,45,105,193,240],"conditions.":[12],"There":[13],"many":[15],"experimental":[16],"and":[17,76,83,119,156,177,195,218],"computational":[18],"methods":[19,142,209],"developed":[20,99],"to":[21,56,70,100,111,124,136,145,234],"identify":[22,112,137],"essential":[23,28,106,113,138,236],"proteins.":[24,107,139],"Computational":[25],"prediction":[26,104,131,151,154,197],"based":[30],"on":[31,81,186],"the":[32,43,46,51,59,72,93,102,116,147,162,165,169,187,191,221,224],"global":[33],"protein-protein":[34],"interaction":[35],"(PPI)":[36],"network":[37],"is":[38,68,98,109,200,230],"severely":[39],"restricted":[40],"because":[41],"insufficiency":[44],"PPI":[47,75,118],"data,":[48],"but":[49],"fortunately":[50],"gene":[52,77],"expression":[53,78],"profiles":[54],"help":[55],"make":[57],"up":[58],"deficiency.":[60],"In":[61],"this":[62],"work,":[63],"Pearson":[64],"correlation":[65],"coefficient":[66,86],"(PCC)":[67],"used":[69,144],"bridge":[71],"gap":[73],"between":[74],"data.":[79],"Based":[80,185],"PCC":[82],"edge":[84],"clustering":[85],"(ECC),":[87],"new":[89],"centrality":[90,96],"measure,":[91],"i.e.,":[92],"weighted":[94],"degree":[95],"(WDC),":[97],"achieve":[101],"reliable":[103],"WDC":[108,171,194,206],"employed":[110],"in":[115,122,161,168,175],"yeast":[117],"e-Coli":[120],"networks":[121],"order":[123],"estimate":[125],"its":[126],"performance.":[127],"For":[128],"comparison,":[129],"other":[130,208],"technologies":[132],"also":[134,226],"performed":[135],"Some":[140],"evaluation":[141],"analyze":[146],"results":[148,155],"from":[149],"various":[150],"approaches.":[152],"The":[153,202],"comparative":[157],"analyses":[158,203,225],"shown":[160],"paper.":[163],"Furthermore,":[164],"parameter":[166],"\u03bb":[167,180,189],"method":[170,198],"will":[172,182],"be":[173,183],"analyzed":[174],"detail":[176],"optimal":[179,188],"value":[181],"found.":[184],"value,":[190],"differentiation":[192],"another":[196],"PeC":[199],"discussed.":[201],"prove":[204],"that":[205,228],"outperforms":[207],"including":[210],"DC,":[211],"BC,":[212],"CC,":[213],"SC,":[214],"EC,":[215],"IC,":[216],"NC,":[217],"PeC.":[219],"At":[220],"same":[222],"time,":[223],"mean":[227],"it":[229],"effective":[232],"way":[233],"predict":[235],"by":[238],"means":[239],"integrating":[241],"different":[242],"data":[243],"sources.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":31},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":17},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
