{"id":"https://openalex.org/W2748115807","doi":"https://doi.org/10.1109/tbme.2018.2819200","title":"Distortion Distribution of Neural Spike Train Sequence Matching With Optogenetics","display_name":"Distortion Distribution of Neural Spike Train Sequence Matching With Optogenetics","publication_year":2018,"publication_date":"2018-03-26","ids":{"openalex":"https://openalex.org/W2748115807","doi":"https://doi.org/10.1109/tbme.2018.2819200","mag":"2748115807","pmid":"https://pubmed.ncbi.nlm.nih.gov/29993402"},"language":"en","primary_location":{"id":"doi:10.1109/tbme.2018.2819200","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tbme.2018.2819200","pdf_url":null,"source":{"id":"https://openalex.org/S5240358","display_name":"IEEE Transactions on Biomedical Engineering","issn_l":"0018-9294","issn":["0018-9294","1558-2531"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Biomedical Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1708.06641","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027703731","display_name":"Adam Noel","orcid":"https://orcid.org/0000-0003-0508-6467"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Adam Noel","raw_affiliation_strings":["School of Engineering, University of Warwick, Coventry, U.K"],"raw_orcid":"https://orcid.org/0000-0003-0508-6467","affiliations":[{"raw_affiliation_string":"School of Engineering, University of Warwick, Coventry, U.K","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014940812","display_name":"Dimitrios Makrakis","orcid":"https://orcid.org/0000-0003-3258-2984"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dimitrios Makrakis","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, University of Ottawa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, University of Ottawa","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046532019","display_name":"Andrew W. Eckford","orcid":"https://orcid.org/0000-0002-9808-1229"},"institutions":[{"id":"https://openalex.org/I192455969","display_name":"York University","ror":"https://ror.org/05fq50484","country_code":"CA","type":"education","lineage":["https://openalex.org/I192455969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew W. Eckford","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, York University"],"raw_orcid":"https://orcid.org/0000-0002-9808-1229","affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, York University","institution_ids":["https://openalex.org/I192455969"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7427,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.63550321,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"65","issue":"12","first_page":"2814","last_page":"2826"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.7925000190734863,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.7925000190734863,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.04769999906420708,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.04470000043511391,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/optogenetics","display_name":"Optogenetics","score":0.8921326398849487},{"id":"https://openalex.org/keywords/spike","display_name":"Spike (software development)","score":0.7333358526229858},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6448161602020264},{"id":"https://openalex.org/keywords/stimulus","display_name":"Stimulus (psychology)","score":0.5987503528594971},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.5347112417221069},{"id":"https://openalex.org/keywords/distortion","display_name":"Distortion (music)","score":0.5149763226509094},{"id":"https://openalex.org/keywords/neuron","display_name":"Neuron","score":0.498607873916626},{"id":"https://openalex.org/keywords/neural-activity","display_name":"Neural activity","score":0.4447588324546814},{"id":"https://openalex.org/keywords/soma","display_name":"Soma","score":0.420462965965271},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.37625691294670105},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3258535861968994},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18705043196678162},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.1269664466381073},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.09498649835586548}],"concepts":[{"id":"https://openalex.org/C50738837","wikidata":"https://www.wikidata.org/wiki/Q781492","display_name":"Optogenetics","level":2,"score":0.8921326398849487},{"id":"https://openalex.org/C2781390188","wikidata":"https://www.wikidata.org/wiki/Q25203449","display_name":"Spike (software development)","level":2,"score":0.7333358526229858},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6448161602020264},{"id":"https://openalex.org/C2779918689","wikidata":"https://www.wikidata.org/wiki/Q3771842","display_name":"Stimulus (psychology)","level":2,"score":0.5987503528594971},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.5347112417221069},{"id":"https://openalex.org/C126780896","wikidata":"https://www.wikidata.org/wiki/Q899871","display_name":"Distortion (music)","level":4,"score":0.5149763226509094},{"id":"https://openalex.org/C2778794669","wikidata":"https://www.wikidata.org/wiki/Q43054","display_name":"Neuron","level":2,"score":0.498607873916626},{"id":"https://openalex.org/C2984127161","wikidata":"https://www.wikidata.org/wiki/Q969316","display_name":"Neural activity","level":2,"score":0.4447588324546814},{"id":"https://openalex.org/C2779617337","wikidata":"https://www.wikidata.org/wiki/Q842429","display_name":"Soma","level":2,"score":0.420462965965271},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.37625691294670105},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3258535861968994},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18705043196678162},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.1269664466381073},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.09498649835586548},{"id":"https://openalex.org/C194257627","wikidata":"https://www.wikidata.org/wiki/Q211554","display_name":"Amplifier","level":3,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.0},{"id":"https://openalex.org/C2776257435","wikidata":"https://www.wikidata.org/wiki/Q1576430","display_name":"Bandwidth (computing)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012815","descriptor_name":"Signal Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012815","descriptor_name":"Signal Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012815","descriptor_name":"Signal Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062308","descriptor_name":"Optogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062308","descriptor_name":"Optogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062308","descriptor_name":"Optogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1109/tbme.2018.2819200","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tbme.2018.2819200","pdf_url":null,"source":{"id":"https://openalex.org/S5240358","display_name":"IEEE Transactions on Biomedical Engineering","issn_l":"0018-9294","issn":["0018-9294","1558-2531"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Biomedical Engineering","raw_type":"journal-article"},{"id":"pmid:29993402","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29993402","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on bio-medical engineering","raw_type":null},{"id":"pmh:oai:wrap.warwick.ac.uk:100079","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:arXiv.org:1708.06641","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1708.06641","pdf_url":"https://arxiv.org/pdf/1708.06641","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:wrap.warwick.ac.uk:121234","is_oa":false,"landing_page_url":"http://wrap.warwick.ac.uk/121234/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1708.06641","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1708.06641","pdf_url":"https://arxiv.org/pdf/1708.06641","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1201364053","https://openalex.org/W1512200437","https://openalex.org/W1521559962","https://openalex.org/W1699458429","https://openalex.org/W1981356662","https://openalex.org/W2008904150","https://openalex.org/W2025753535","https://openalex.org/W2047984762","https://openalex.org/W2056493740","https://openalex.org/W2056843459","https://openalex.org/W2056897980","https://openalex.org/W2058082904","https://openalex.org/W2058488568","https://openalex.org/W2075562222","https://openalex.org/W2076964542","https://openalex.org/W2115295370","https://openalex.org/W2127183925","https://openalex.org/W2157239334","https://openalex.org/W2158256695","https://openalex.org/W2159423248","https://openalex.org/W2164653071","https://openalex.org/W2334173195","https://openalex.org/W2337130998","https://openalex.org/W2400910495","https://openalex.org/W2416532995","https://openalex.org/W2494175767","https://openalex.org/W2525258345","https://openalex.org/W2533630356","https://openalex.org/W2554710141","https://openalex.org/W2564128737","https://openalex.org/W2598000716","https://openalex.org/W2606299981","https://openalex.org/W2615504620","https://openalex.org/W2801179766","https://openalex.org/W2951895591","https://openalex.org/W3104496079","https://openalex.org/W4245808720","https://openalex.org/W4285719527","https://openalex.org/W4300223101","https://openalex.org/W4310310054","https://openalex.org/W6637202585","https://openalex.org/W6730067205"],"related_works":["https://openalex.org/W4383340182","https://openalex.org/W1968763225","https://openalex.org/W1180809072","https://openalex.org/W2423989819","https://openalex.org/W2040277507","https://openalex.org/W2086143987","https://openalex.org/W2033189714","https://openalex.org/W2018243751","https://openalex.org/W2790568778","https://openalex.org/W2051036206"],"abstract_inverted_index":{"OBJECTIVE:":[0],"This":[1,178],"paper":[2],"uses":[3],"a":[4,14,181],"simple":[5],"optogenetic":[6],"model":[7,119,186],"to":[8,37,55,126,163,172,187],"compare":[9],"the":[10,46,57,64,73,76,80,90,93,101,128,147,153,157,165,168,196,201,206],"timing":[11,58],"distortion":[12,94,121],"between":[13,75,130],"randomly-generated":[15],"target":[16,81,102],"spike":[17,23,84,132,191],"sequence":[18,103],"and":[19,82,89,120,137,155,171,200,208],"an":[20,27,184],"externally-stimulated":[21,67],"neuron":[22,131],"sequence.":[24],"Optogenetics":[25],"is":[26,63,72,106,180],"emerging":[28],"field":[29],"of":[30,79,92,149,167,204,210],"neuroscience":[31],"where":[32],"neurons":[33,47],"are":[34,53,95,112,135],"genetically":[35],"modified":[36],"express":[38],"light-sensitive":[39],"receptors":[40],"that":[41,134,212],"enable":[42],"external":[43,143,198],"control":[44],"when":[45,100],"fire.":[48],"METHODS:":[49],"Two":[50],"different":[51,190],"measures":[52,122],"studied":[54],"determine":[56],"distortion.":[59],"The":[60,69,87,109,117],"first":[61],"measure":[62,71,127],"delay":[65],"in":[66,97],"spikes.":[68],"second":[70],"root-mean-square-error":[74],"filtered":[77],"outputs":[78],"stimulated":[83],"sequences.":[85],"RESULTS:":[86],"mean":[88],"distribution":[91],"derived":[96,110],"closed":[98],"form":[99],"generation":[104],"rate":[105],"sufficiently":[107],"low.":[108],"results":[111],"verified":[113],"with":[114],"simulations.":[115],"CONCLUSION:":[116],"proposed":[118],"can":[123,139,213],"be":[124,140,214],"used":[125],"deviation":[129],"sequences":[133],"prescribed":[136],"what":[138],"achieved":[141],"via":[142],"stimulation.":[144],"SIGNIFICANCE:":[145],"Given":[146],"prominence":[148],"neuronal":[150],"signaling":[151],"within":[152],"brain":[154],"throughout":[156],"body,":[158],"optogenetics":[159],"has":[160],"significant":[161],"potential":[162],"improve":[164],"understanding":[166,205],"nervous":[169],"system":[170],"develop":[173],"treatments":[174],"for":[175],"neurological":[176],"diseases.":[177],"work":[179],"step":[182],"towards":[183],"analytical":[185],"predict":[188],"whether":[189],"trains":[192],"were":[193],"observed":[194],"from":[195],"same":[197],"stimulus,":[199],"broader":[202],"goal":[203],"quantity":[207],"reliability":[209],"information":[211],"carried":[215],"by":[216],"neurons.":[217]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
