{"id":"https://openalex.org/W2411390783","doi":"https://doi.org/10.1109/tbme.2016.2560762","title":"Toward Community Standards and Software for Whole-Cell Modeling","display_name":"Toward Community Standards and Software for Whole-Cell Modeling","publication_year":2016,"publication_date":"2016-06-10","ids":{"openalex":"https://openalex.org/W2411390783","doi":"https://doi.org/10.1109/tbme.2016.2560762","mag":"2411390783","pmid":"https://pubmed.ncbi.nlm.nih.gov/27305665"},"language":"en","primary_location":{"id":"doi:10.1109/tbme.2016.2560762","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tbme.2016.2560762","pdf_url":null,"source":{"id":"https://openalex.org/S5240358","display_name":"IEEE Transactions on Biomedical Engineering","issn_l":"0018-9294","issn":["0018-9294","1558-2531"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Biomedical Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1109/tbme.2016.2560762","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103188993","display_name":"Dagmar Waltemath","orcid":"https://orcid.org/0000-0002-5886-5563"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dagmar Waltemath","raw_affiliation_strings":["Institute of Computer Science, University of Rostock, Rostock, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5886-5563","affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016750554","display_name":"Jonathan R. Karr","orcid":"https://orcid.org/0000-0002-2605-5080"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan R. Karr","raw_affiliation_strings":["Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076617999","display_name":"Frank Bergmann","orcid":"https://orcid.org/0000-0001-5553-4702"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Frank T. Bergmann","raw_affiliation_strings":["BioQuant, University of Heidelberg"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioQuant, University of Heidelberg","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041054741","display_name":"Vijayalakshmi Chelliah","orcid":"https://orcid.org/0000-0002-2618-283X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Vijayalakshmi Chelliah","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016716446","display_name":"Michael Hucka","orcid":"https://orcid.org/0000-0001-9105-5960"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Hucka","raw_affiliation_strings":["Department of Computing and Mathematical Sciences, California Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing and Mathematical Sciences, California Institute of Technology","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067310765","display_name":"Marcus Krantz","orcid":"https://orcid.org/0000-0001-7843-8342"},"institutions":[{"id":"https://openalex.org/I192389796","display_name":"Cal Poly Humboldt","ror":"https://ror.org/02qt0xs84","country_code":"US","type":"education","lineage":["https://openalex.org/I192389796"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcus Krantz","raw_affiliation_strings":["Department of Biology, Humboldt University of Berlin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Humboldt University of Berlin","institution_ids":["https://openalex.org/I192389796"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046914403","display_name":"Wolfram Liebermeister","orcid":"https://orcid.org/0000-0002-2568-2381"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfram Liebermeister","raw_affiliation_strings":["Institute of Biochemistry, University Medicine Charit\u00e9 Berlin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biochemistry, University Medicine Charit\u00e9 Berlin","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058635802","display_name":"Pedro Mendes","orcid":"https://orcid.org/0000-0001-6507-9168"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210099114","display_name":"Czech Academy of Sciences, Institute of Biotechnology","ror":"https://ror.org/00wzqmx94","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210099114"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["CZ","GB","US"],"is_corresponding":false,"raw_author_name":"Pedro Mendes","raw_affiliation_strings":["Department of Cell Biology, University of Connecticut Health Center","Manchester Institute of Biotechnology and the School of Computer Science, University of Manchester"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, University of Connecticut Health Center","institution_ids":["https://openalex.org/I75929689"]},{"raw_affiliation_string":"Manchester Institute of Biotechnology and the School of Computer Science, University of Manchester","institution_ids":["https://openalex.org/I28407311","https://openalex.org/I4210099114"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111386695","display_name":"Chris J. Myers","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris J. Myers","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Utah"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Utah","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069804732","display_name":"P\u0131nar Pir","orcid":"https://orcid.org/0000-0002-0078-4904"},"institutions":[{"id":"https://openalex.org/I109297418","display_name":"Gebze Technical University","ror":"https://ror.org/01sdnnq10","country_code":"TR","type":"education","lineage":["https://openalex.org/I109297418"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Pinar Pir","raw_affiliation_strings":["Gebze Technical University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gebze Technical University","institution_ids":["https://openalex.org/I109297418"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013237196","display_name":"Begum Alaybeyoglu","orcid":"https://orcid.org/0000-0001-6785-3719"},"institutions":[{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Begum Alaybeyoglu","raw_affiliation_strings":["Department of Chemical Engineering, Bo\u01e7azi\u00e7i University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Bo\u01e7azi\u00e7i University","institution_ids":["https://openalex.org/I4405392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049656090","display_name":"Naveen K. Aranganathan","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Naveen K Aranganathan","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075100530","display_name":"Kambiz Baghalian","orcid":"https://orcid.org/0000-0002-0813-7111"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kambiz Baghalian","raw_affiliation_strings":["Department of Plant Sciences, University of Oxford"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Sciences, University of Oxford","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058065068","display_name":"Arne T. Bittig","orcid":"https://orcid.org/0000-0002-6391-1528"},"institutions":[{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["CZ","DE"],"is_corresponding":false,"raw_author_name":"Arne T. Bittig","raw_affiliation_strings":["Institute of Computer Science, University of Rostock"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Rostock","institution_ids":["https://openalex.org/I4665924","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057850491","display_name":"Paulo E. P. Burke","orcid":"https://orcid.org/0000-0002-9640-299X"},"institutions":[{"id":"https://openalex.org/I88273585","display_name":"Universidade Federal de S\u00e3o Paulo","ror":"https://ror.org/02k5swt12","country_code":"BR","type":"education","lineage":["https://openalex.org/I88273585"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Paulo E. Pinto Burke","raw_affiliation_strings":["Institute of Science and Technology, Federal University of S\u00e3o Paulo"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology, Federal University of S\u00e3o Paulo","institution_ids":["https://openalex.org/I88273585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102873358","display_name":"Matteo Cantarelli","orcid":"https://orcid.org/0000-0002-0054-226X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Matteo Cantarelli","raw_affiliation_strings":["OpenWorm"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"OpenWorm","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087435021","display_name":"Yin Hoon Chew","orcid":"https://orcid.org/0000-0002-9258-583X"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["FR","GB","US"],"is_corresponding":false,"raw_author_name":"Yin Hoon Chew","raw_affiliation_strings":["Centre for Synthetic and Systems Biology, University of Edinburgh","Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Synthetic and Systems Biology, University of Edinburgh","institution_ids":["https://openalex.org/I4210101231","https://openalex.org/I98677209"]},{"raw_affiliation_string":"Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026040695","display_name":"Rafael S. Costa","orcid":null},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Rafael S. Costa","raw_affiliation_strings":["Centre of Intelligent Systems-IDMEC, Instituto Superior T\u00e9cnico, University of Lisbon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of Intelligent Systems-IDMEC, Instituto Superior T\u00e9cnico, University of Lisbon","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048486605","display_name":"Joseph Cursons","orcid":"https://orcid.org/0000-0002-5053-4540"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Joseph Cursons","raw_affiliation_strings":["ARC Centre of Excellence in Convergent Bio-Nano Science and Technology, Melbourne School of Engineering, University of Melbourne"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Convergent Bio-Nano Science and Technology, Melbourne School of Engineering, University of Melbourne","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035416919","display_name":"Tobias Czauderna","orcid":"https://orcid.org/0000-0002-1788-9593"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tobias Czauderna","raw_affiliation_strings":["Faculty of Information Technology, Monash University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, Monash University","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066362880","display_name":"Arthur P. Goldberg","orcid":"https://orcid.org/0000-0003-2772-1484"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arthur P. Goldberg","raw_affiliation_strings":["Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107919027","display_name":"Harold G\u00f3mez","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Harold F. Gomez","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Z\u00fcrich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Z\u00fcrich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016157021","display_name":"Jens Hahn","orcid":"https://orcid.org/0000-0003-2200-6553"},"institutions":[{"id":"https://openalex.org/I192389796","display_name":"Cal Poly Humboldt","ror":"https://ror.org/02qt0xs84","country_code":"US","type":"education","lineage":["https://openalex.org/I192389796"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jens Hahn","raw_affiliation_strings":["Department of Biology, Humboldt University of Berlin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Humboldt University of Berlin","institution_ids":["https://openalex.org/I192389796"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083840456","display_name":"Hameri Tuure","orcid":"https://orcid.org/0000-0003-3177-4087"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Tuure Hameri","raw_affiliation_strings":["Laboratory of Computational Systems Biotechnology, Swiss Federal Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Systems Biotechnology, Swiss Federal Institute of Technology","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027473615","display_name":"Daniel F. Hernandez Gardiol","orcid":null},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Daniel F. Hernandez Gardiol","raw_affiliation_strings":["Laboratory of Computational Systems Biotechnology, Swiss Federal Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Systems Biotechnology, Swiss Federal Institute of Technology","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051502481","display_name":"Denis Kazakiewicz","orcid":"https://orcid.org/0000-0002-0390-6444"},"institutions":[{"id":"https://openalex.org/I146122375","display_name":"Medical University of Bia\u0142ystok","ror":"https://ror.org/00y4ya841","country_code":"PL","type":"education","lineage":["https://openalex.org/I146122375"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["BE","PL"],"is_corresponding":false,"raw_author_name":"Denis Kazakiewicz","raw_affiliation_strings":["Center for Innovative Research, Medical University of Bia\u0142ystok","Center for Statistics, Universiteit Hasselt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Innovative Research, Medical University of Bia\u0142ystok","institution_ids":["https://openalex.org/I146122375"]},{"raw_affiliation_string":"Center for Statistics, Universiteit Hasselt","institution_ids":["https://openalex.org/I878454856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088736662","display_name":"Ilya Kiselev","orcid":"https://orcid.org/0000-0003-1057-5986"},"institutions":[{"id":"https://openalex.org/I4210127387","display_name":"Siberian Branch of the Russian Academy of Sciences","ror":"https://ror.org/02frkq021","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210127387"]},{"id":"https://openalex.org/I4210159365","display_name":"Technological Design Institute of Scientific Instrument Engineering","ror":"https://ror.org/053bhme26","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210159365"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ilya Kiselev","raw_affiliation_strings":["Design Technological Institute of Digital Techniques, Siberian Branch of the Russian Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Design Technological Institute of Digital Techniques, Siberian Branch of the Russian Academy of Sciences","institution_ids":["https://openalex.org/I4210159365","https://openalex.org/I4210127387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005964345","display_name":"Vincent Knight-Schrijver","orcid":"https://orcid.org/0000-0002-7916-3827"},"institutions":[{"id":"https://openalex.org/I1302113299","display_name":"Babraham Institute","ror":"https://ror.org/01d5qpn59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1302113299","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Vincent Knight-Schrijver","raw_affiliation_strings":["Babraham Institute"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Babraham Institute","institution_ids":["https://openalex.org/I1302113299"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107856156","display_name":"Christian Kn\u00fcpfer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144795","display_name":"Institut F\u00fcr Angewandte Kulturforschung","ror":"https://ror.org/04dmgcf89","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210144795"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Knupfer","raw_affiliation_strings":["Institut f\u00fcr Informatik"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik","institution_ids":["https://openalex.org/I4210144795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012727458","display_name":"Matthias K\u00f6nig","orcid":"https://orcid.org/0000-0003-1725-179X"},"institutions":[{"id":"https://openalex.org/I192389796","display_name":"Cal Poly Humboldt","ror":"https://ror.org/02qt0xs84","country_code":"US","type":"education","lineage":["https://openalex.org/I192389796"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthias Konig","raw_affiliation_strings":["Institute of Biochemistry, Humboldt-University Berlin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biochemistry, Humboldt-University Berlin","institution_ids":["https://openalex.org/I192389796"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101865131","display_name":"Daewon Lee","orcid":"https://orcid.org/0000-0002-3004-2901"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Daewon Lee","raw_affiliation_strings":["Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology","institution_ids":["https://openalex.org/I4210101891","https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065284428","display_name":"Audald Lloret\u2010Villas","orcid":"https://orcid.org/0000-0001-6272-9639"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Audald Lloret-Villas","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023995949","display_name":"Nikita Mandrik","orcid":null},"institutions":[{"id":"https://openalex.org/I4210096862","display_name":"Sobolev Institute of Mathematics","ror":"https://ror.org/00shc0s02","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1313323035","https://openalex.org/I4210096862","https://openalex.org/I4210124601","https://openalex.org/I4210127387"]},{"id":"https://openalex.org/I4210127387","display_name":"Siberian Branch of the Russian Academy of Sciences","ror":"https://ror.org/02frkq021","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210127387"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Nikita Mandrik","raw_affiliation_strings":["Sobolev Institute of Mathematics, Siberian Branch of the Russian Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sobolev Institute of Mathematics, Siberian Branch of the Russian Academy of Sciences","institution_ids":["https://openalex.org/I4210127387","https://openalex.org/I4210096862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035478017","display_name":"Kyle Medley","orcid":"https://orcid.org/0000-0002-9135-0844"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Kyle Medley","raw_affiliation_strings":["Department of Bioengineering, University of Washington"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Washington","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065086906","display_name":"Bertrand Moreau","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bertrand Moreau","raw_affiliation_strings":["CoSMo Company"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CoSMo Company","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040096579","display_name":"Hojjat Naderi\u2010Meshkin","orcid":"https://orcid.org/0000-0003-3988-3229"},"institutions":[{"id":"https://openalex.org/I2802694670","display_name":"Academic Center for Education, Culture and Research","ror":"https://ror.org/0126z4b94","country_code":"IR","type":"nonprofit","lineage":["https://openalex.org/I2802694670"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Hojjat Naderi-Meshkin","raw_affiliation_strings":["Stem Cell and Regenerative Medicine Research Department, Culture Research (ACECR)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stem Cell and Regenerative Medicine Research Department, Culture Research (ACECR)","institution_ids":["https://openalex.org/I2802694670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070784871","display_name":"Sucheendra K. Palaniappan","orcid":"https://orcid.org/0000-0002-2829-2311"},"institutions":[{"id":"https://openalex.org/I4210133778","display_name":"Centre Inria de l'Universit\u00e9 de Rennes","ror":"https://ror.org/04040yw90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210133778"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sucheendra K. Palaniappan","raw_affiliation_strings":["Rennes\u2014Bretagne Atlantique Research Centre, Institute for Research in Computer Science and Automation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rennes\u2014Bretagne Atlantique Research Centre, Institute for Research in Computer Science and Automation","institution_ids":["https://openalex.org/I4210133778"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007908323","display_name":"Daniel A. Priego-Espinosa","orcid":"https://orcid.org/0000-0001-5780-8789"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Daniel Priego-Espinosa","raw_affiliation_strings":["Instituto de Ciencias F\u00edsicas, Universidad Nacional Aut\u00f3noma de M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Ciencias F\u00edsicas, Universidad Nacional Aut\u00f3noma de M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046119695","display_name":"Martin Scharm","orcid":"https://orcid.org/0000-0003-4519-7030"},"institutions":[{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["CZ","DE"],"is_corresponding":false,"raw_author_name":"Martin Scharm","raw_affiliation_strings":["Institute of Computer Science, University of Rostock"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Rostock","institution_ids":["https://openalex.org/I4665924","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100620542","display_name":"Mahesh Kumar Sharma","orcid":"https://orcid.org/0000-0003-3953-0319"},"institutions":[{"id":"https://openalex.org/I4210146715","display_name":"National Institute of Pharmaceutical Education and Research","ror":"https://ror.org/040dgqr26","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210146715"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Mahesh Sharma","raw_affiliation_strings":["Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research","institution_ids":["https://openalex.org/I4210146715"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084775701","display_name":"Kieran Smallbone","orcid":"https://orcid.org/0000-0003-2815-7045"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kieran Smallbone","raw_affiliation_strings":["Manchester Centre for Integrative Systems Biology, University of Manchester"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Manchester Centre for Integrative Systems Biology, University of Manchester","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072794019","display_name":"Natalie Stanford","orcid":"https://orcid.org/0000-0003-4958-0184"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Natalie J. Stanford","raw_affiliation_strings":["Manchester Centre for Integrative Systems Biology, University of Manchester"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Manchester Centre for Integrative Systems Biology, University of Manchester","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102254570","display_name":"Je-Hoon Song","orcid":null},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Je-Hoon Song","raw_affiliation_strings":["Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology","institution_ids":["https://openalex.org/I4210101891","https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033208803","display_name":"Tom Theile","orcid":"https://orcid.org/0000-0003-0573-9093"},"institutions":[{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["CZ","DE"],"is_corresponding":false,"raw_author_name":"Tom Theile","raw_affiliation_strings":["Institute of Computer Science, University of Rostock"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Rostock","institution_ids":["https://openalex.org/I4665924","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089102597","display_name":"Milenko Tokic","orcid":"https://orcid.org/0000-0001-8076-4964"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Milenko Tokic","raw_affiliation_strings":["Laboratory of Computational Systems Biotechnology, Swiss Federal Institute of Technology","Swiss Institute of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Systems Biotechnology, Swiss Federal Institute of Technology","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065793018","display_name":"Namrata Tomar","orcid":null},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Namrata Tomar","raw_affiliation_strings":["Department of Dermatology, Friedrich-Alexander University of Erlangen-N\u00fcrnberg"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Dermatology, Friedrich-Alexander University of Erlangen-N\u00fcrnberg","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019876939","display_name":"Vasundra Tour\u00e9","orcid":"https://orcid.org/0000-0003-4639-4431"},"institutions":[{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["CZ","DE"],"is_corresponding":false,"raw_author_name":"Vasundra Toure","raw_affiliation_strings":["Institute of Computer Science, University of Rostock"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Rostock","institution_ids":["https://openalex.org/I4665924","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030718435","display_name":"Jannis Uhlendorf","orcid":null},"institutions":[{"id":"https://openalex.org/I192389796","display_name":"Cal Poly Humboldt","ror":"https://ror.org/02qt0xs84","country_code":"US","type":"education","lineage":["https://openalex.org/I192389796"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jannis Uhlendorf","raw_affiliation_strings":["Department of Biology, Humboldt University of Berlin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Humboldt University of Berlin","institution_ids":["https://openalex.org/I192389796"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058626872","display_name":"Thawfeek Varusai","orcid":"https://orcid.org/0000-0002-7864-5971"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Thawfeek M Varusai","raw_affiliation_strings":["Department of Systems Biology Ireland, University College Dublin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Biology Ireland, University College Dublin","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069256315","display_name":"Leandro Watanabe","orcid":"https://orcid.org/0000-0001-7030-8690"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leandro H. Watanabe","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Utah"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Utah","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028006958","display_name":"Florian Wendland","orcid":"https://orcid.org/0000-0003-3662-3798"},"institutions":[{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["CZ","DE"],"is_corresponding":false,"raw_author_name":"Florian Wendland","raw_affiliation_strings":["Institute of Computer Science, University of Rostock"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Rostock","institution_ids":["https://openalex.org/I4665924","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068934423","display_name":"Markus Wolfien","orcid":"https://orcid.org/0000-0002-1887-4772"},"institutions":[{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["CZ","DE"],"is_corresponding":false,"raw_author_name":"Markus Wolfien","raw_affiliation_strings":["Institute of Computer Science, University of Rostock"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Rostock","institution_ids":["https://openalex.org/I4665924","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082126398","display_name":"James T. Yurkovich","orcid":"https://orcid.org/0000-0002-9403-509X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James T. Yurkovich","raw_affiliation_strings":["Department of Bioengineering, University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041077139","display_name":"Yan Zhu","orcid":"https://orcid.org/0000-0001-7342-3782"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yan Zhu","raw_affiliation_strings":["Monash Institute of Pharmaceutical Sciences, Monash University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monash Institute of Pharmaceutical Sciences, Monash University","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042638242","display_name":"Argyris Zardilis","orcid":"https://orcid.org/0000-0003-4582-9421"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["FR","GB"],"is_corresponding":false,"raw_author_name":"Argyris Zardilis","raw_affiliation_strings":["Centre for Synthetic and Systems Biology, University of Edinburgh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Synthetic and Systems Biology, University of Edinburgh","institution_ids":["https://openalex.org/I4210101231","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001921696","display_name":"Anna Zhukova","orcid":"https://orcid.org/0000-0003-2200-7935"},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210140961","display_name":"Institut de Biochimie et G\u00e9n\u00e9tique Cellulaires","ror":"https://ror.org/048xwe611","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210096427","https://openalex.org/I4210140961"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anna Zhukova","raw_affiliation_strings":["Institut de Biochimie et G\u00e9n\u00e9tique Cellulaires, National Center for Scientific Research","University of Bordeaux"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Biochimie et G\u00e9n\u00e9tique Cellulaires, National Center for Scientific Research","institution_ids":["https://openalex.org/I4210140961"]},{"raw_affiliation_string":"University of Bordeaux","institution_ids":["https://openalex.org/I15057530"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003441276","display_name":"Falk Schreiber","orcid":"https://orcid.org/0000-0002-9307-3254"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","DE"],"is_corresponding":false,"raw_author_name":"Falk Schreiber","raw_affiliation_strings":["Department of Computer and Information Science, University of Konstanz","Faculty of Information Technology, Monash University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Konstanz","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"Faculty of Information Technology, Monash University","institution_ids":["https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":18,"institutions_distinct_count":57,"corresponding_author_ids":["https://openalex.org/A5103188993"],"corresponding_institution_ids":["https://openalex.org/I4665924"],"apc_list":null,"apc_paid":null,"fwci":5.7446,"has_fulltext":true,"cited_by_count":62,"citation_normalized_percentile":{"value":0.96463018,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"63","issue":"10","first_page":"2007","last_page":"2014"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.29159998893737793,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.29159998893737793,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.056699998676776886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12286","display_name":"Erythrocyte Function and Pathophysiology","score":0.03880000114440918,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6566526889801025},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.6365832686424255},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6119473576545715},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5907868146896362},{"id":"https://openalex.org/keywords/modeling-language","display_name":"Modeling language","score":0.5774229764938354},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.5084542036056519},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.43082213401794434},{"id":"https://openalex.org/keywords/data-modeling","display_name":"Data modeling","score":0.4148620367050171},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3709995150566101},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.21921557188034058},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.2116405963897705},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1753678321838379},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12912243604660034}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6566526889801025},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.6365832686424255},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6119473576545715},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5907868146896362},{"id":"https://openalex.org/C179603123","wikidata":"https://www.wikidata.org/wiki/Q1941921","display_name":"Modeling language","level":3,"score":0.5774229764938354},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.5084542036056519},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.43082213401794434},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.4148620367050171},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3709995150566101},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.21921557188034058},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.2116405963897705},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1753678321838379},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12912243604660034}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003584","descriptor_name":"Cytological Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003584","descriptor_name":"Cytological Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003584","descriptor_name":"Cytological Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":11,"locations":[{"id":"doi:10.1109/tbme.2016.2560762","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tbme.2016.2560762","pdf_url":null,"source":{"id":"https://openalex.org/S5240358","display_name":"IEEE Transactions on Biomedical Engineering","issn_l":"0018-9294","issn":["0018-9294","1558-2531"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Biomedical Engineering","raw_type":"journal-article"},{"id":"pmid:27305665","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27305665","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on bio-medical engineering","raw_type":null},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/260730","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/260730","pdf_url":"http://hdl.handle.net/11343/260730","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:kops.uni-konstanz.de:123456789/34863","is_oa":true,"landing_page_url":"http://nbn-resolving.de/urn:nbn:de:bsz:352-0-346347","pdf_url":"https://kops.uni-konstanz.de/server/api/core/bitstreams/81bb51d1-8767-4e12-b54f-05bc802b2b48/content","source":{"id":"https://openalex.org/S4306401487","display_name":"KOPS (University of Konstanz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189712700","host_organization_name":"University of Konstanz","host_organization_lineage":["https://openalex.org/I189712700"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Transactions on Biomedical Engineering. 2016, 63(10), pp. 2007-2014. ISSN 0018-9294. eISSN 1558-2531. Available under: doi: 10.1109/TBME.2016.2560762","raw_type":"doc-type:Text"},{"id":"pmh:oai:authors.library.caltech.edu:69034","is_oa":true,"landing_page_url":"https://authors.library.caltech.edu/69034/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:HAL:hal-04361601v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04361601","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Transactions on Biomedical Engineering, 2016, 63 (10), pp.2007-2014. &#x27E8;10.1109/TBME.2016.2560762&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:documentserver.uhasselt.be:1942/22718","is_oa":true,"landing_page_url":"http://hdl.handle.net/1942/22718","pdf_url":null,"source":{"id":"https://openalex.org/S4306401926","display_name":"Document Server@UHasselt (UHasselt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I878454856","host_organization_name":"Hasselt University","host_organization_lineage":["https://openalex.org/I878454856"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:4305015","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC5451320","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5451320","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5451320","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Trans Biomed Eng","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/dacf7fd1-48d5-4775-90c8-57f9dea24e29","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/dacf7fd1-48d5-4775-90c8-57f9dea24e29","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Waltemath, D, Karr, J R, Bergmann, F T, Chelliah, V, Hucka, M, Krantz, M, Liebermeister, W, Mendes, P, Myers, C J, Pir, P, Alaybeyoglu, B, Aranganathan, N K, Baghalian, K, Bittig, A T, Burke, P E P, Cantarelli, M, Chew, Y H, Costa, R S, Cursons, J, Czauderna, T, Goldberg, A P, Gomez, H F, Hahn, J, Hameri, T, Gardiol, D F H, Kazakiewicz, D, Kiselev, I, Knight-Schrijver, V, Knupfer, C, Konig, M, Lee, D, Lloret-Villas, A, Mandrik, N, Medley, J K, Moreau, B, Naderi-Meshkin, H, Palaniappan, S K, Priego-Espinosa, D, Scharm, M, Sharma, M, Smallbone, K, Stanford, N J, Song, J-H, Theile, T, Tokic, M, Tomar, N, Toure, V, Uhlendorf, J, Varusai, T M, Watanabe, L H, Wendland, F, Wolfien, M, Yurkovich, J T, Zhu, Y, Zardilis, A, Zhukova, A & Schreiber, F 2016, 'Toward Community Standards and Software for Whole-Cell Modeling', IEEE Transactions on Biomedical Engineering. https://doi.org/10.1109/TBME.2016.2560762","raw_type":"article"},{"id":"pmh:oai:repositorio.unifesp.br:11600/57018","is_oa":true,"landing_page_url":"https://repositorio.unifesp.br/handle/11600/57018","pdf_url":null,"source":{"id":"https://openalex.org/S4377196380","display_name":"UNIFESP Institutional Repository (Universidade Federal de S\u00e3o Paulo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I88273585","host_organization_name":"Universidade Federal de S\u00e3o Paulo","host_organization_lineage":["https://openalex.org/I88273585"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:UNIFESP","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1109/tbme.2016.2560762","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tbme.2016.2560762","pdf_url":null,"source":{"id":"https://openalex.org/S5240358","display_name":"IEEE Transactions on Biomedical Engineering","issn_l":"0018-9294","issn":["0018-9294","1558-2531"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Biomedical Engineering","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4011049829","display_name":null,"funder_award_id":"88495","funder_id":"https://openalex.org/F4320320882","funder_display_name":"Volkswagen Foundation"},{"id":"https://openalex.org/G4052807473","display_name":null,"funder_award_id":"1548123","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306183","display_name":"James S. McDonnell Foundation","ror":"https://ror.org/03dy4aq19"},{"id":"https://openalex.org/F4320320882","display_name":"Volkswagen Foundation","ror":"https://ror.org/03bsmfz84"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W836474583","https://openalex.org/W1106090635","https://openalex.org/W1609175937","https://openalex.org/W1862398452","https://openalex.org/W1935434993","https://openalex.org/W1986366456","https://openalex.org/W1987242421","https://openalex.org/W1989488173","https://openalex.org/W2007315393","https://openalex.org/W2026039411","https://openalex.org/W2038264484","https://openalex.org/W2048465561","https://openalex.org/W2068146784","https://openalex.org/W2069157810","https://openalex.org/W2081781433","https://openalex.org/W2087563523","https://openalex.org/W2089562567","https://openalex.org/W2090517830","https://openalex.org/W2098367419","https://openalex.org/W2101647774","https://openalex.org/W2102653059","https://openalex.org/W2107459209","https://openalex.org/W2116947789","https://openalex.org/W2123783513","https://openalex.org/W2124419982","https://openalex.org/W2125615370","https://openalex.org/W2127872845","https://openalex.org/W2129075935","https://openalex.org/W2147814423","https://openalex.org/W2150908245","https://openalex.org/W2151031807","https://openalex.org/W2151690182","https://openalex.org/W2151991601","https://openalex.org/W2154268795","https://openalex.org/W2155418451","https://openalex.org/W2163993275","https://openalex.org/W2169818249","https://openalex.org/W2183271564","https://openalex.org/W2184251399","https://openalex.org/W2186373804","https://openalex.org/W2350901857","https://openalex.org/W2441893520","https://openalex.org/W2885369830","https://openalex.org/W2916475656","https://openalex.org/W4231917197","https://openalex.org/W4240433289","https://openalex.org/W4241685680","https://openalex.org/W4285719527","https://openalex.org/W6686208936","https://openalex.org/W6813711271"],"related_works":["https://openalex.org/W2082621456","https://openalex.org/W2150908245","https://openalex.org/W2981332207","https://openalex.org/W2211443823","https://openalex.org/W2100525485","https://openalex.org/W2040642413","https://openalex.org/W3048335229","https://openalex.org/W2146744007","https://openalex.org/W2890725831","https://openalex.org/W3041939341"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Whole-cell":[1],"(WC)":[2],"modeling":[3,38,46,84],"is":[4],"a":[5,52],"promising":[6],"tool":[7],"for":[8,43],"biological":[9],"research,":[10],"bioengineering,":[11],"and":[12,39,48,87,96],"medicine.":[13],"However,":[14],"substantial":[15],"work":[16],"remains":[17],"to":[18,35,69],"create":[19],"accurate":[20],"comprehensive":[21,101],"models":[22,72],"of":[23],"complex":[24],"cells.":[25],"METHODS:":[26],"We":[27,90],"organized":[28],"the":[29,41,58,74],"2015":[30],"Whole-Cell":[31],"Modeling":[32],"Summer":[33],"School":[34],"teach":[36],"WC":[37,45,55,71,83],"evaluate":[40],"need":[42],"new":[44,82,94],"standards":[47,95],"software":[49,97],"by":[50],"recoding":[51],"recently":[53],"published":[54],"model":[56],"in":[57],"Systems":[59],"Biology":[60],"Markup":[61],"Language.":[62],"RESULTS:":[63],"Our":[64],"analysis":[65],"revealed":[66],"several":[67,81],"challenges":[68],"representing":[70],"using":[73],"current":[75],"standards.":[76],"CONCLUSION:":[77],"We,":[78],"therefore,":[79],"propose":[80],"standards,":[85],"software,":[86],"databases.":[88],"SIGNIFICANCE:":[89],"anticipate":[91],"that":[92],"these":[93],"will":[98],"enable":[99],"more":[100],"models.":[102]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":2}],"updated_date":"2026-05-18T08:16:58.900851","created_date":"2025-10-10T00:00:00"}
