{"id":"https://openalex.org/W2158646408","doi":"https://doi.org/10.1109/tbme.2011.2164794","title":"GOrevenge: A Novel Generic Reverse Engineering Method for the Identification of Critical Molecular Players, Through the Use of Ontologies","display_name":"GOrevenge: A Novel Generic Reverse Engineering Method for the Identification of Critical Molecular Players, Through the Use of Ontologies","publication_year":2011,"publication_date":"2011-08-16","ids":{"openalex":"https://openalex.org/W2158646408","doi":"https://doi.org/10.1109/tbme.2011.2164794","mag":"2158646408","pmid":"https://pubmed.ncbi.nlm.nih.gov/21846603"},"language":"en","primary_location":{"id":"doi:10.1109/tbme.2011.2164794","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tbme.2011.2164794","pdf_url":null,"source":{"id":"https://openalex.org/S5240358","display_name":"IEEE Transactions on Biomedical Engineering","issn_l":"0018-9294","issn":["0018-9294","1558-2531"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Biomedical Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/3435029","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050246862","display_name":"\u039a\u03c9\u03bd\u03c3\u03c4\u03b1\u03bd\u03c4\u03af\u03bd\u03bf\u03c2 \u039c\u03bf\u03cd\u03c4\u03c3\u03b5\u03bb\u03bf\u03c2","orcid":"https://orcid.org/0000-0002-6759-8540"},"institutions":[{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"K. Moutselos","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia 35100, Greece. kmoutselos@sch.gr","Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia 35100, Greece. kmoutselos@sch.gr","institution_ids":["https://openalex.org/I179161674"]},{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, Greece","institution_ids":["https://openalex.org/I179161674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013025849","display_name":"Ilias Maglogiannis","orcid":"https://orcid.org/0000-0003-2860-399X"},"institutions":[{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"I. Maglogiannis","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, Greece","institution_ids":["https://openalex.org/I179161674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067189264","display_name":"Aristotelis Chatziioannou","orcid":"https://orcid.org/0000-0003-2078-0844"},"institutions":[{"id":"https://openalex.org/I4210127711","display_name":"National Hellenic Research Foundation","ror":"https://ror.org/033m02g29","country_code":"GR","type":"funder","lineage":["https://openalex.org/I4210127711"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"A. Chatziioannou","raw_affiliation_strings":["Metabolic Engineering and Bioinformatics Group, Institute of Biological Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolic Engineering and Bioinformatics Group, Institute of Biological Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece","institution_ids":["https://openalex.org/I4210127711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0492,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.76304805,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"58","issue":"12","first_page":"3522","last_page":"3527"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6385469436645508},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6236439347267151},{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.5985374450683594},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5409979820251465},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5073031783103943},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.4465562403202057},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28926801681518555}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6385469436645508},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6236439347267151},{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.5985374450683594},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5409979820251465},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5073031783103943},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.4465562403202057},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28926801681518555},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054218","descriptor_name":"Precursor T-Cell Lymphoblastic Leukemia-Lymphoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054218","descriptor_name":"Precursor T-Cell Lymphoblastic Leukemia-Lymphoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054218","descriptor_name":"Precursor T-Cell Lymphoblastic Leukemia-Lymphoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1109/tbme.2011.2164794","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tbme.2011.2164794","pdf_url":null,"source":{"id":"https://openalex.org/S5240358","display_name":"IEEE Transactions on Biomedical Engineering","issn_l":"0018-9294","issn":["0018-9294","1558-2531"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Biomedical Engineering","raw_type":"journal-article"},{"id":"pmid:21846603","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21846603","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on bio-medical engineering","raw_type":null},{"id":"pmh:oai:http://helios-eie.ekt.gr:10442/12289","is_oa":false,"landing_page_url":"http://hdl.handle.net/10442/12289","pdf_url":null,"source":{"id":"https://openalex.org/S4306402248","display_name":"National Hellenic Research Foundation Helios Repository (National Hellenic Research Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210127711","host_organization_name":"National Hellenic Research Foundation","host_organization_lineage":["https://openalex.org/I4210127711"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:ir.lib.uth.gr:11615/31187","is_oa":false,"landing_page_url":"http://hdl.handle.net/11615/31187","pdf_url":null,"source":{"id":"https://openalex.org/S4306400243","display_name":"University of Thessaly Institutional Repository (University of Thessaly)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145722265","host_organization_name":"University of Thessaly","host_organization_lineage":["https://openalex.org/I145722265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"&lt;Go to ISI&gt;://WOS:000297341500022","raw_type":"journalArticle"},{"id":"pmh:oai:zenodo.org:3435029","is_oa":true,"landing_page_url":"https://zenodo.org/record/3435029","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:3435029","is_oa":true,"landing_page_url":"https://zenodo.org/record/3435029","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W157836768","https://openalex.org/W1526205344","https://openalex.org/W1608094059","https://openalex.org/W1995213405","https://openalex.org/W1995887163","https://openalex.org/W2068007852","https://openalex.org/W2078744455","https://openalex.org/W2084168100","https://openalex.org/W2097926631","https://openalex.org/W2102427034","https://openalex.org/W2103017472","https://openalex.org/W2112872859","https://openalex.org/W2116054884","https://openalex.org/W2118816784","https://openalex.org/W2133465414","https://openalex.org/W2133549161","https://openalex.org/W2140635350","https://openalex.org/W2144606631","https://openalex.org/W2145126338","https://openalex.org/W2154219988","https://openalex.org/W2155065436","https://openalex.org/W2170866859","https://openalex.org/W2950225692","https://openalex.org/W6631666057","https://openalex.org/W6677712588"],"related_works":["https://openalex.org/W2363831530","https://openalex.org/W2363845219","https://openalex.org/W2381057835","https://openalex.org/W1789649838","https://openalex.org/W2051831113","https://openalex.org/W1984362519","https://openalex.org/W2362738525","https://openalex.org/W1616281264","https://openalex.org/W2350923288","https://openalex.org/W2371005633"],"abstract_inverted_index":{"The":[0,131],"ever-increasing":[1],"use":[2],"of":[3,14,41,44,73,84,95,107,111,124,128],"ontologies":[4],"in":[5,137],"modern":[6],"biological":[7],"analysis":[8],"and":[9,21,101,122,141,151,156],"interpretation":[10],"facilitates":[11],"the":[12,15,30,39,61,71,82,92,105,108,112,120,125],"understanding":[13],"cellular":[16,99],"procedures,":[17],"their":[18,22,74],"hierarchical":[19],"organization,":[20],"potential":[23],"interactions":[24],"at":[25],"a":[26,35,67,138,142],"system's":[27],"level.":[28],"Currently,":[29],"gene":[31,147],"ontology":[32],"serves":[33],"as":[34,66],"paradigm,":[36],"where":[37],"through":[38,104],"annotation":[40],"whole":[42],"genomes":[43],"certain":[45],"organisms,":[46],"genes":[47,96],"subsets":[48],"selected,":[49],"either":[50],"from":[51],"high-throughput":[52],"experiments":[53],"or":[54],"with":[55],"an":[56],"established":[57],"pivotal":[58],"role":[59,127],"regarding":[60,119,159],"probed":[62],"disease,":[63],"can":[64],"act":[65],"starting":[68],"point":[69],"for":[70],"exploration":[72],"underlying":[75],"functional":[76,93],"interconnections.":[77],"This":[78],"may":[79,115],"also":[80],"aid":[81],"elucidation":[83],"hidden":[85],"regulatory":[86],"mechanisms":[87],"among":[88],"genes.":[89,130],"Reverse":[90],"engineering":[91],"relevance":[94],"to":[97],"specific":[98,129],"pathways":[100],"vice":[102],"versa,":[103],"exploitation":[106],"inner":[109],"structure":[110],"ontological":[113],"vocabularies,":[114],"help":[116],"impart":[117],"insight":[118],"identification":[121],"prioritization":[123],"critical":[126],"proposed":[132],"graph-theoretical":[133],"method":[134],"is":[135],"showcased":[136],"pancreatic":[139],"cancer":[140],"T-cell":[143],"acute":[144],"lymphoblastic":[145],"leukemia":[146],"set,":[148],"incorporating":[149],"edge":[150],"Resnik":[152],"semantic":[153],"similarity":[154],"metrics,":[155],"systematically":[157],"evaluated":[158],"its":[160],"performance.":[161]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
