{"id":"https://openalex.org/W4413847071","doi":"https://doi.org/10.1109/tbdata.2025.3604169","title":"scProGraph: A Cell Bagging Strategy for Cell Type Annotation With Gene Interaction-Aware Explainability","display_name":"scProGraph: A Cell Bagging Strategy for Cell Type Annotation With Gene Interaction-Aware Explainability","publication_year":2025,"publication_date":"2025-08-29","ids":{"openalex":"https://openalex.org/W4413847071","doi":"https://doi.org/10.1109/tbdata.2025.3604169"},"language":"en","primary_location":{"id":"doi:10.1109/tbdata.2025.3604169","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tbdata.2025.3604169","pdf_url":null,"source":{"id":"https://openalex.org/S2491400915","display_name":"IEEE Transactions on Big Data","issn_l":"2332-7790","issn":["2332-7790","2372-2096"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Xinyuan Li","orcid":"https://orcid.org/0009-0009-4262-8502"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinyuan Li","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Shaanxi, China"],"raw_orcid":"https://orcid.org/0009-0009-4262-8502","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081031013","display_name":"Yue-Chao Li","orcid":"https://orcid.org/0000-0002-9912-0648"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue-Chao Li","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Shaanxi, China"],"raw_orcid":"https://orcid.org/0000-0002-9912-0648","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hai-Ru You","orcid":null},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Hai-Ru You","raw_affiliation_strings":["School of Engineering, The University of Sydney, Darlington, New South Wales, Australia","School of Engineering, The University of Sydney, Darlington, NSW, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Engineering, The University of Sydney, Darlington, New South Wales, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"School of Engineering, The University of Sydney, Darlington, NSW, Australia","institution_ids":["https://openalex.org/I129604602","https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009944817","display_name":"Xuequn Shang","orcid":"https://orcid.org/0000-0002-7249-8210"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuequn Shang","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Shaanxi, China"],"raw_orcid":"https://orcid.org/0000-0002-7249-8210","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101604712","display_name":"Leon Wong","orcid":"https://orcid.org/0000-0002-6864-991X"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Leon Wong","raw_affiliation_strings":["Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, Urumqi, China","School of Computer Science, Northwestern Polytechnical University, Shaanxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, Urumqi, China","institution_ids":["https://openalex.org/I4210106108"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083469101","display_name":"Zhi-An Huang","orcid":"https://orcid.org/0000-0001-9974-148X"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]},{"id":"https://openalex.org/I4210124427","display_name":"City College of Dongguan University of Technology","ror":"https://ror.org/02vdh2x09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799850029","https://openalex.org/I4210124427"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Zhi-An Huang","raw_affiliation_strings":["Research Office, City University of Hong Kong (Dongguan), Dongguan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Office, City University of Hong Kong (Dongguan), Dongguan, China","institution_ids":["https://openalex.org/I168719708","https://openalex.org/I4210124427"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhu-Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Shaanxi, China"],"raw_orcid":"https://orcid.org/0000-0003-1266-2696","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017713277","display_name":"Yu\u2010An Huang","orcid":"https://orcid.org/0000-0002-5346-2394"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-An Huang","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi'an, China"],"raw_orcid":"https://orcid.org/0000-0002-5346-2394","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.3315,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.90157343,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"147","last_page":"158"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9775999784469604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7233415246009827},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5686473846435547},{"id":"https://openalex.org/keywords/type","display_name":"Type (biology)","score":0.4298710823059082},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3878730535507202},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1493154764175415}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7233415246009827},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5686473846435547},{"id":"https://openalex.org/C2777299769","wikidata":"https://www.wikidata.org/wiki/Q3707858","display_name":"Type (biology)","level":2,"score":0.4298710823059082},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3878730535507202},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1493154764175415},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tbdata.2025.3604169","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tbdata.2025.3604169","pdf_url":null,"source":{"id":"https://openalex.org/S2491400915","display_name":"IEEE Transactions on Big Data","issn_l":"2332-7790","issn":["2332-7790","2372-2096"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Big Data","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2413035655","display_name":null,"funder_award_id":"62472353","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2828312957","display_name":null,"funder_award_id":"62302495","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2938854305","display_name":null,"funder_award_id":"G2023KY05102","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G440985306","display_name":null,"funder_award_id":"62522316","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7555217577","display_name":null,"funder_award_id":"D5000230199","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W2171042267","https://openalex.org/W2523620612","https://openalex.org/W2766447205","https://openalex.org/W2794480084","https://openalex.org/W2796170779","https://openalex.org/W2886347923","https://openalex.org/W2902652978","https://openalex.org/W2907514116","https://openalex.org/W2923082472","https://openalex.org/W2942380588","https://openalex.org/W2951737297","https://openalex.org/W2951914955","https://openalex.org/W2959295202","https://openalex.org/W2966569571","https://openalex.org/W2973034691","https://openalex.org/W2977253392","https://openalex.org/W2977707586","https://openalex.org/W2995410603","https://openalex.org/W3004512212","https://openalex.org/W3014469486","https://openalex.org/W3016020856","https://openalex.org/W3025103340","https://openalex.org/W3028505928","https://openalex.org/W3036137852","https://openalex.org/W3036843909","https://openalex.org/W3043398874","https://openalex.org/W3045395564","https://openalex.org/W3048804154","https://openalex.org/W3096486351","https://openalex.org/W3101697142","https://openalex.org/W3121168830","https://openalex.org/W3124814274","https://openalex.org/W3187123939","https://openalex.org/W3215430231","https://openalex.org/W4221065117","https://openalex.org/W4307432965","https://openalex.org/W4385290032","https://openalex.org/W4387451658","https://openalex.org/W4390971189","https://openalex.org/W4393153069","https://openalex.org/W4396703916","https://openalex.org/W4400869919"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}