{"id":"https://openalex.org/W4400975345","doi":"https://doi.org/10.1109/tbdata.2024.3433380","title":"A Systemic Pipeline of Identifying lncRNA-Disease Associations to the Prognosis and Treatment of Hepatocellular Carcinoma","display_name":"A Systemic Pipeline of Identifying lncRNA-Disease Associations to the Prognosis and Treatment of Hepatocellular Carcinoma","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4400975345","doi":"https://doi.org/10.1109/tbdata.2024.3433380"},"language":"en","primary_location":{"id":"doi:10.1109/tbdata.2024.3433380","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tbdata.2024.3433380","pdf_url":null,"source":{"id":"https://openalex.org/S2491400915","display_name":"IEEE Transactions on Big Data","issn_l":"2332-7790","issn":["2332-7790","2372-2096"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107678765","display_name":"Wenxiang Zhang","orcid":"https://orcid.org/0000-0002-8926-1615"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I4210141719","display_name":"University of Hong Kong - Shenzhen Hospital","ror":"https://ror.org/047w7d678","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210141719"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenxiang Zhang","raw_affiliation_strings":["Department of teaching and research, Shenzhen University General Hospital, Shenzhen, China","School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Department of teaching and research, Shenzhen University General Hospital, Shenzhen, China","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I4210141719"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014346487","display_name":"Ye Yuan","orcid":"https://orcid.org/0000-0002-0247-9866"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ye Yuan","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081941068","display_name":"Hang Wei","orcid":"https://orcid.org/0000-0002-0579-1716"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hang Wei","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi&#x0027;an, China","School of Computer Science and Technology, Xidian University, Xi&#x0027;an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi&#x0027;an, China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi&#x0027;an, Shaanxi, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100407200","display_name":"Wenjing Zhang","orcid":"https://orcid.org/0009-0009-8472-5220"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I4210141719","display_name":"University of Hong Kong - Shenzhen Hospital","ror":"https://ror.org/047w7d678","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210141719"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjing Zhang","raw_affiliation_strings":["Department of teaching and research, Shenzhen University General Hospital, Shenzhen, China","School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China","Department of teaching and research, Shenzhen University General Hospital, China"],"affiliations":[{"raw_affiliation_string":"Department of teaching and research, Shenzhen University General Hospital, Shenzhen, China","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I4210141719"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"Department of teaching and research, Shenzhen University General Hospital, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100395532","display_name":"Bin Liu","orcid":"https://orcid.org/0000-0002-8520-8374"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Liu","raw_affiliation_strings":["School of Computer Science, Beijing Institute of Technology, Beijing, China","School of Computer Science and Technology and Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Computer Science and Technology and Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5107678765"],"corresponding_institution_ids":["https://openalex.org/I125839683","https://openalex.org/I180726961","https://openalex.org/I4210141719"],"apc_list":null,"apc_paid":null,"fwci":0.5589,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.67312249,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"11","issue":"2","first_page":"800","last_page":"809"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11189","display_name":"Transplantation: Methods and Outcomes","score":0.9254000186920166,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hepatocellular-carcinoma","display_name":"Hepatocellular carcinoma","score":0.7833738327026367},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5950511693954468},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5673491358757019},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47353479266166687},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.46632128953933716},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.40149208903312683},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.3610718846321106}],"concepts":[{"id":"https://openalex.org/C2778019345","wikidata":"https://www.wikidata.org/wiki/Q1148337","display_name":"Hepatocellular carcinoma","level":2,"score":0.7833738327026367},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5950511693954468},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5673491358757019},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47353479266166687},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.46632128953933716},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.40149208903312683},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.3610718846321106},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tbdata.2024.3433380","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tbdata.2024.3433380","pdf_url":null,"source":{"id":"https://openalex.org/S2491400915","display_name":"IEEE Transactions on Big Data","issn_l":"2332-7790","issn":["2332-7790","2372-2096"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Big Data","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.75}],"awards":[{"id":"https://openalex.org/G5263694324","display_name":null,"funder_award_id":"62325202","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6351260564","display_name":null,"funder_award_id":"62271049","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6446245973","display_name":null,"funder_award_id":"62250028","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7894669521","display_name":null,"funder_award_id":"U22A2039","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":81,"referenced_works":["https://openalex.org/W2010457001","https://openalex.org/W2033577259","https://openalex.org/W2066671159","https://openalex.org/W2117790705","https://openalex.org/W2117977572","https://openalex.org/W2130430382","https://openalex.org/W2140099276","https://openalex.org/W2146512944","https://openalex.org/W2148974484","https://openalex.org/W2152970345","https://openalex.org/W2158485828","https://openalex.org/W2159707944","https://openalex.org/W2160068229","https://openalex.org/W2168630917","https://openalex.org/W2234453634","https://openalex.org/W2408796111","https://openalex.org/W2756511952","https://openalex.org/W2765950793","https://openalex.org/W2767178841","https://openalex.org/W2788142646","https://openalex.org/W2810292158","https://openalex.org/W2895679848","https://openalex.org/W2914560998","https://openalex.org/W2928481113","https://openalex.org/W2933240245","https://openalex.org/W2949685204","https://openalex.org/W2951498518","https://openalex.org/W2954227790","https://openalex.org/W2966214074","https://openalex.org/W2983688743","https://openalex.org/W2984285153","https://openalex.org/W3000503908","https://openalex.org/W3008601088","https://openalex.org/W3014726572","https://openalex.org/W3047614398","https://openalex.org/W3084361149","https://openalex.org/W3099929518","https://openalex.org/W3115880421","https://openalex.org/W3116906693","https://openalex.org/W3121695713","https://openalex.org/W3128027065","https://openalex.org/W3128646645","https://openalex.org/W3136042383","https://openalex.org/W3138009552","https://openalex.org/W3156270925","https://openalex.org/W3162763704","https://openalex.org/W3170986249","https://openalex.org/W3175611284","https://openalex.org/W3182293965","https://openalex.org/W3207672631","https://openalex.org/W3213337333","https://openalex.org/W3214608846","https://openalex.org/W4200398470","https://openalex.org/W4214823354","https://openalex.org/W4224056241","https://openalex.org/W4225700086","https://openalex.org/W4246271082","https://openalex.org/W4280492560","https://openalex.org/W4280587098","https://openalex.org/W4281699175","https://openalex.org/W4282838913","https://openalex.org/W4285041302","https://openalex.org/W4290052546","https://openalex.org/W4295242659","https://openalex.org/W4296078501","https://openalex.org/W4307288398","https://openalex.org/W4307447012","https://openalex.org/W4309665044","https://openalex.org/W4311285804","https://openalex.org/W4313488537","https://openalex.org/W4313561039","https://openalex.org/W4315977496","https://openalex.org/W4317931697","https://openalex.org/W4318150241","https://openalex.org/W4318392954","https://openalex.org/W4328051236","https://openalex.org/W4366823306","https://openalex.org/W4390978706","https://openalex.org/W6726873649","https://openalex.org/W6730084236","https://openalex.org/W6844618844"],"related_works":["https://openalex.org/W2417822880","https://openalex.org/W628600844","https://openalex.org/W1570838273","https://openalex.org/W2410885201","https://openalex.org/W2385390897","https://openalex.org/W3172842848","https://openalex.org/W2418745692","https://openalex.org/W2404951810","https://openalex.org/W2800415451","https://openalex.org/W2337719538"],"abstract_inverted_index":{"Exploring":[0],"disease":[1,11,25,85,121],"mechanisms":[2,26],"at":[3],"the":[4,32,59,68,83,91,114,120,127,134,154,160],"lncRNA":[5],"level":[6],"provides":[7],"valuable":[8],"guidance":[9],"for":[10,176],"prognosis":[12,86,122,173],"and":[13,37,67,87,108,123,133,164,174,198],"treatment.":[14,200],"Recently,":[15],"there":[16],"has":[17],"been":[18],"a":[19,71,101,144,168,177,189],"surge":[20],"of":[21,34,65,70,93,129,137],"interest":[22],"in":[23,40,119],"exploring":[24],"via":[27],"computational":[28,45,139],"methods":[29,46],"to":[30,82,126,149],"overcome":[31],"challenge":[33],"tremendous":[35],"manpower":[36],"material":[38],"resources":[39],"biological":[41],"experiments.":[42],"However,":[43],"current":[44],"suffer":[47],"from":[48,90],"two":[49],"main":[50],"limitations:":[51],"simple":[52],"data":[53,94],"structures":[54],"that":[55,75],"do":[56],"not":[57,80],"consider":[58],"close":[60],"association":[61,191],"between":[62,156,192],"multiple":[63],"types":[64],"data,":[66],"lack":[69],"systematic":[72],"pathogenesis":[73,110],"analysis":[74,89,111,171],"identified":[76],"disease-associated":[77,105,131,151],"lncRNAs":[78,106,116,132,152],"are":[79,117],"applied":[81],"downstream":[84,109],"therapeutic":[88],"perspective":[92],"analysis.":[95],"In":[96],"this":[97],"end,":[98],"we":[99,142,166,187],"present":[100],"systemic":[102],"pipeline":[103],"including":[104],"identification":[107,140],"on":[112,172],"how":[113],"predicted":[115],"involved":[118],"therapy.":[124],"Due":[125],"importance":[128],"identifying":[130],"weak":[135],"interpretability":[136],"existing":[138],"methods,":[141,163],"propose":[143],"novel":[145],"approach":[146],"named":[147],"iLncDA-PT":[148],"identify":[150],"considering":[153],"interactions":[155],"various":[157],"bio-entities":[158],"outperforming":[159],"other":[161],"state-of-the-art":[162],"then":[165],"conduct":[167],"systematically":[169],"subsequent":[170],"therapy":[175],"specific":[178],"disease,":[179],"hepatocellular":[180],"carcinoma":[181],"(HCC),":[182],"as":[183],"an":[184],"example.":[185],"Finally,":[186],"reveal":[188],"significant":[190],"immune":[193],"checkpoint":[194],"expression,":[195],"tumor":[196],"microenvironment,":[197],"drug":[199]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
