{"id":"https://openalex.org/W4410393925","doi":"https://doi.org/10.1109/tai.2025.3567434","title":"Deep3BPP: Identification of Blood\u2013Brain Barrier Penetrating Peptides Using Word Embedding Feature Extraction Method and CNN-LSTM","display_name":"Deep3BPP: Identification of Blood\u2013Brain Barrier Penetrating Peptides Using Word Embedding Feature Extraction Method and CNN-LSTM","publication_year":2025,"publication_date":"2025-05-15","ids":{"openalex":"https://openalex.org/W4410393925","doi":"https://doi.org/10.1109/tai.2025.3567434"},"language":"en","primary_location":{"id":"doi:10.1109/tai.2025.3567434","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tai.2025.3567434","pdf_url":null,"source":{"id":"https://openalex.org/S4210169448","display_name":"IEEE Transactions on Artificial Intelligence","issn_l":"2691-4581","issn":["2691-4581"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Artificial Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101506859","display_name":"Md. Ashikur Rahman","orcid":"https://orcid.org/0000-0002-3673-7392"},"institutions":[{"id":"https://openalex.org/I200606013","display_name":"Daffodil International University","ror":"https://ror.org/052t4a858","country_code":"BD","type":"education","lineage":["https://openalex.org/I200606013"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Md. Ashikur Rahman","raw_affiliation_strings":["Department of Software Engineering, Daffodil International University, Birulia, Dhaka, Bangladesh","Department of Software Engineering, Daffodil International University, Daffodil Smart City, Dhaka, Birulia, Bangladesh"],"raw_orcid":"https://orcid.org/0000-0002-3673-7392","affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Daffodil International University, Birulia, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I200606013"]},{"raw_affiliation_string":"Department of Software Engineering, Daffodil International University, Daffodil Smart City, Dhaka, Birulia, Bangladesh","institution_ids":["https://openalex.org/I200606013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057419247","display_name":"Md. Mamun Ali","orcid":"https://orcid.org/0000-0001-8125-2995"},"institutions":[{"id":"https://openalex.org/I200606013","display_name":"Daffodil International University","ror":"https://ror.org/052t4a858","country_code":"BD","type":"education","lineage":["https://openalex.org/I200606013"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["BD","CA"],"is_corresponding":false,"raw_author_name":"Md. Mamun Ali","raw_affiliation_strings":["Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","Department of Software Engineering, Daffodil International University, Daffodil Smart City, Dhaka, Birulia, Bangladesh"],"raw_orcid":"https://orcid.org/0000-0001-8125-2995","affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Department of Software Engineering, Daffodil International University, Daffodil Smart City, Dhaka, Birulia, Bangladesh","institution_ids":["https://openalex.org/I200606013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020570233","display_name":"Kawsar Ahmed","orcid":"https://orcid.org/0000-0002-4034-9819"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kawsar Ahmed","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK, Canada"],"raw_orcid":"https://orcid.org/0000-0002-4034-9819","affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040850719","display_name":"Imran Mahmud","orcid":"https://orcid.org/0000-0003-2962-8515"},"institutions":[{"id":"https://openalex.org/I200606013","display_name":"Daffodil International University","ror":"https://ror.org/052t4a858","country_code":"BD","type":"education","lineage":["https://openalex.org/I200606013"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Imran Mahmud","raw_affiliation_strings":["Department of Software Engineering, Daffodil International University, Birulia, Dhaka, Bangladesh","Department of Software Engineering, Daffodil International University, Daffodil Smart City, Dhaka, Birulia, Bangladesh"],"raw_orcid":"https://orcid.org/0000-0003-2962-8515","affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Daffodil International University, Birulia, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I200606013"]},{"raw_affiliation_string":"Department of Software Engineering, Daffodil International University, Daffodil Smart City, Dhaka, Birulia, Bangladesh","institution_ids":["https://openalex.org/I200606013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071017561","display_name":"Francis M. Bui","orcid":"https://orcid.org/0000-0002-8799-5965"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Francis M. Bui","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK, Canada"],"raw_orcid":"https://orcid.org/0000-0002-8799-5965","affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100379239","display_name":"Li Chen","orcid":"https://orcid.org/0000-0002-3769-1488"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Li Chen","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK, Canada"],"raw_orcid":"https://orcid.org/0000-0002-3769-1488","affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034828056","display_name":"Mohammad Ali Moni","orcid":"https://orcid.org/0000-0003-0756-1006"},"institutions":[{"id":"https://openalex.org/I153230381","display_name":"Charles Sturt University","ror":"https://ror.org/00wfvh315","country_code":"AU","type":"education","lineage":["https://openalex.org/I153230381"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mohammad Ali Moni","raw_affiliation_strings":["Centre for AI &#x0026; Digital Health Technology, Artificial Intelligence &#x0026; Cyber Futures Institute, Charles Sturt University, Bathurst, NSW, Australia"],"raw_orcid":"https://orcid.org/0000-0003-0756-1006","affiliations":[{"raw_affiliation_string":"Centre for AI &#x0026; Digital Health Technology, Artificial Intelligence &#x0026; Cyber Futures Institute, Charles Sturt University, Bathurst, NSW, Australia","institution_ids":["https://openalex.org/I153230381"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.1519,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.77231362,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"7","issue":"1","first_page":"562","last_page":"570"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6103922128677368},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5199176669120789},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49637871980667114},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.4928710460662842},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.4884749948978424},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.4770231246948242},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.41308265924453735},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.387453556060791},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3423108458518982},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.30072736740112305},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.1895483136177063},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1603395640850067},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.04899805784225464},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.04622432589530945}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6103922128677368},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5199176669120789},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49637871980667114},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.4928710460662842},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.4884749948978424},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.4770231246948242},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.41308265924453735},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.387453556060791},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3423108458518982},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.30072736740112305},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.1895483136177063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1603395640850067},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.04899805784225464},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.04622432589530945},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tai.2025.3567434","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tai.2025.3567434","pdf_url":null,"source":{"id":"https://openalex.org/S4210169448","display_name":"IEEE Transactions on Artificial Intelligence","issn_l":"2691-4581","issn":["2691-4581"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Artificial Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1689711448","https://openalex.org/W1931581539","https://openalex.org/W1983472437","https://openalex.org/W2015541518","https://openalex.org/W2045911289","https://openalex.org/W2064675550","https://openalex.org/W2069143585","https://openalex.org/W2075006095","https://openalex.org/W2132292391","https://openalex.org/W2145957695","https://openalex.org/W2155194485","https://openalex.org/W2253028130","https://openalex.org/W2398245217","https://openalex.org/W2619499709","https://openalex.org/W2751418808","https://openalex.org/W2801891815","https://openalex.org/W2896479849","https://openalex.org/W2900386946","https://openalex.org/W2903705089","https://openalex.org/W2905894294","https://openalex.org/W2912909565","https://openalex.org/W2936599571","https://openalex.org/W2951959332","https://openalex.org/W3014492507","https://openalex.org/W3084352865","https://openalex.org/W3086980329","https://openalex.org/W3092722566","https://openalex.org/W3106717751","https://openalex.org/W3119003488","https://openalex.org/W3121559085","https://openalex.org/W3134163647","https://openalex.org/W3135096391","https://openalex.org/W3163400780","https://openalex.org/W3180597373","https://openalex.org/W3181450985","https://openalex.org/W3181506921","https://openalex.org/W3183194627","https://openalex.org/W3185516026","https://openalex.org/W3190208036","https://openalex.org/W3209496151","https://openalex.org/W3210154426","https://openalex.org/W4200199004","https://openalex.org/W4205567487","https://openalex.org/W4220894258","https://openalex.org/W4280654348","https://openalex.org/W4282039833","https://openalex.org/W4282944220","https://openalex.org/W4283825837","https://openalex.org/W4292869357","https://openalex.org/W4307338327","https://openalex.org/W4317212880"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2037549926","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W2419146053","https://openalex.org/W4388890789","https://openalex.org/W2088247287","https://openalex.org/W4286432911"],"abstract_inverted_index":{"To":[0],"prevent":[1],"different":[2],"chemicals":[3],"from":[4],"entering":[5],"the":[6,8,20,23,32,50,100,117,159,177],"brain,":[7],"blood-brain":[9],"barrier":[10,18,29],"penetrating":[11],"peptide":[12,107],"(3BPP)":[13],"acts":[14],"as":[15],"a":[16,83,90,102,125,130,143],"vital":[17],"between":[19],"bloodstream":[21],"and":[22,36,52,57,60,76,110,135,146,161,176],"central":[24],"nervous":[25],"system":[26],"(CNS).":[27],"This":[28],"significantly":[30],"hinders":[31],"treatment":[33],"of":[34,128,133,138,149,179],"neurological":[35,58],"CNS":[37,56],"disorders.":[38,61],"3BPP":[39,72,87],"can":[40,171],"get":[41],"beyond":[42],"this":[43,79,165],"barrier,":[44],"making":[45],"it":[46],"easier":[47],"to":[48],"enter":[49],"brain":[51],"essential":[53],"for":[54,71,86,106,116,156],"treating":[55],"diseases":[59],"Computational":[62],"techniques":[63],"are":[64,74],"being":[65],"explored":[66],"because":[67],"traditional":[68],"laboratory":[69],"tests":[70],"identification":[73],"costly":[75],"time-consuming.":[77],"In":[78],"work,":[80],"we":[81],"introduced":[82],"novel":[84],"technique":[85],"prediction":[88,119],"with":[89,113],"hybrid":[91],"deep":[92],"learning":[93],"model.":[94,120],"Our":[95],"proposed":[96],"model,":[97],"Deep3BPP,":[98],"leverages":[99],"LSA,":[101],"word":[103],"embedding":[104],"method":[105,148],"sequence":[108],"extraction,":[109],"integrates":[111],"CNN":[112],"LSTM":[114],"(CNN-LSTM)":[115],"final":[118],"Deep3BPP":[121],"performance":[122],"metrics":[123],"show":[124],"remarkable":[126],"accuracy":[127],"97.42%,":[129],"Kappa":[131],"value":[132],"0.9257,":[134],"an":[136],"MCC":[137],"0.9362.":[139],"These":[140],"findings":[141],"indicate":[142],"more":[144],"efficient":[145],"cost-effective":[147],"identifying":[150],"3BPP,":[151],"which":[152],"has":[153],"important":[154],"implications":[155],"researchers":[157],"in":[158],"pharmaceutical":[160],"medical":[162],"industries.":[163],"Thus,":[164],"work":[166],"offers":[167],"insightful":[168],"information":[169],"that":[170],"advance":[172],"both":[173],"scientific":[174],"research":[175],"well-being":[178],"people":[180],"overall.":[181]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
