{"id":"https://openalex.org/W2023400083","doi":"https://doi.org/10.1109/tac.2013.2270072","title":"Intercellular Delay Regulates the Collective Period of Repressively Coupled Gene Regulatory Oscillator Networks","display_name":"Intercellular Delay Regulates the Collective Period of Repressively Coupled Gene Regulatory Oscillator Networks","publication_year":2013,"publication_date":"2013-06-19","ids":{"openalex":"https://openalex.org/W2023400083","doi":"https://doi.org/10.1109/tac.2013.2270072","mag":"2023400083","pmid":"https://pubmed.ncbi.nlm.nih.gov/25346544"},"language":"en","primary_location":{"id":"doi:10.1109/tac.2013.2270072","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tac.2013.2270072","pdf_url":null,"source":{"id":"https://openalex.org/S184954342","display_name":"IEEE Transactions on Automatic Control","issn_l":"0018-9286","issn":["0018-9286","1558-2523","2334-3303"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Automatic Control","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4207127","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100339993","display_name":"Yongqiang Wang","orcid":"https://orcid.org/0000-0003-3109-9480"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yongqiang Wang","raw_affiliation_strings":["Department of Chemical Engineering, University of California, Santa Barbara, California 93106-5080 USA. wyqthu@gmail.com ","Dept. of Chem. Eng., Univ. of California, Santa Barbara, Santa Barbara, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, University of California, Santa Barbara, California 93106-5080 USA. wyqthu@gmail.com ","institution_ids":[]},{"raw_affiliation_string":"Dept. of Chem. Eng., Univ. of California, Santa Barbara, Santa Barbara, CA, USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012594690","display_name":"Yutaka Hori","orcid":"https://orcid.org/0000-0002-3253-4985"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yutaka Hori","raw_affiliation_strings":["Department of Information Physics and Computing, The University of Tokyo, Tokyo 113-8656 Japan. Yutaka_hori@ipc.i.u-tokyo.ac.jp ","Dept. of Inf., Phys. & Comput., Univ. of Tokyo, Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Information Physics and Computing, The University of Tokyo, Tokyo 113-8656 Japan. Yutaka_hori@ipc.i.u-tokyo.ac.jp ","institution_ids":[]},{"raw_affiliation_string":"Dept. of Inf., Phys. & Comput., Univ. of Tokyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042960650","display_name":"Shinji Hara","orcid":"https://orcid.org/0000-0002-9539-9426"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shinji Hara","raw_affiliation_strings":["Department of Information Physics and Computing, The University of Tokyo, Tokyo 113-8656 Japan. Shinji_hara@ipc.i.u-tokyo.ac.jp ","Dept. of Inf., Phys. & Comput., Univ. of Tokyo, Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Information Physics and Computing, The University of Tokyo, Tokyo 113-8656 Japan. Shinji_hara@ipc.i.u-tokyo.ac.jp ","institution_ids":[]},{"raw_affiliation_string":"Dept. of Inf., Phys. & Comput., Univ. of Tokyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103218398","display_name":"Francis J. Doyle","orcid":"https://orcid.org/0000-0001-5342-4083"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Francis J. Doyle","raw_affiliation_strings":["Department of Chemical Engineering, University of California, Santa Barbara, California 93106-5080 USA. frank.doyle@icb.ucsb.edu ","Dept. of Chem. Eng., Univ. of California, Santa Barbara, Santa Barbara, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, University of California, Santa Barbara, California 93106-5080 USA. frank.doyle@icb.ucsb.edu ","institution_ids":[]},{"raw_affiliation_string":"Dept. of Chem. Eng., Univ. of California, Santa Barbara, Santa Barbara, CA, USA","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100339993"],"corresponding_institution_ids":["https://openalex.org/I154570441"],"apc_list":null,"apc_paid":null,"fwci":0.7474,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.71191716,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"59","issue":"1","first_page":"211","last_page":"216"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11268","display_name":"Light effects on plants","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11513","display_name":"stochastic dynamics and bifurcation","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/intuition","display_name":"Intuition","score":0.5600374341011047},{"id":"https://openalex.org/keywords/control-theory","display_name":"Control theory (sociology)","score":0.5209599733352661},{"id":"https://openalex.org/keywords/period","display_name":"Period (music)","score":0.5162091851234436},{"id":"https://openalex.org/keywords/collective-behavior","display_name":"Collective behavior","score":0.5124621987342834},{"id":"https://openalex.org/keywords/harmonic-oscillator","display_name":"Harmonic oscillator","score":0.5089950561523438},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.48140835762023926},{"id":"https://openalex.org/keywords/intracellular","display_name":"Intracellular","score":0.45786622166633606},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.4327489733695984},{"id":"https://openalex.org/keywords/nonlinear-system","display_name":"Nonlinear system","score":0.4267391562461853},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.39238935708999634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35960549116134644},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3565652370452881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2981787323951721},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2704457938671112},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.13778752088546753},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.12208038568496704},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.09168124198913574}],"concepts":[{"id":"https://openalex.org/C132010649","wikidata":"https://www.wikidata.org/wiki/Q189222","display_name":"Intuition","level":2,"score":0.5600374341011047},{"id":"https://openalex.org/C47446073","wikidata":"https://www.wikidata.org/wiki/Q5165890","display_name":"Control theory (sociology)","level":3,"score":0.5209599733352661},{"id":"https://openalex.org/C2781291010","wikidata":"https://www.wikidata.org/wiki/Q178580","display_name":"Period (music)","level":2,"score":0.5162091851234436},{"id":"https://openalex.org/C100339178","wikidata":"https://www.wikidata.org/wiki/Q2548752","display_name":"Collective behavior","level":2,"score":0.5124621987342834},{"id":"https://openalex.org/C40934718","wikidata":"https://www.wikidata.org/wiki/Q190070","display_name":"Harmonic oscillator","level":2,"score":0.5089950561523438},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.48140835762023926},{"id":"https://openalex.org/C79879829","wikidata":"https://www.wikidata.org/wiki/Q5571762","display_name":"Intracellular","level":2,"score":0.45786622166633606},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.4327489733695984},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.4267391562461853},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.39238935708999634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35960549116134644},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3565652370452881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2981787323951721},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2704457938671112},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.13778752088546753},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.12208038568496704},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.09168124198913574},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/tac.2013.2270072","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tac.2013.2270072","pdf_url":null,"source":{"id":"https://openalex.org/S184954342","display_name":"IEEE Transactions on Automatic Control","issn_l":"0018-9286","issn":["0018-9286","1558-2523","2334-3303"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Automatic Control","raw_type":"journal-article"},{"id":"pmid:25346544","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25346544","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on automatic control","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4207127","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4207127","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Trans Automat Contr","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4207127","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4207127","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Trans Automat Contr","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W985433685","https://openalex.org/W1501421306","https://openalex.org/W1698604584","https://openalex.org/W1979385177","https://openalex.org/W1987523774","https://openalex.org/W1988799042","https://openalex.org/W1990787630","https://openalex.org/W1992850999","https://openalex.org/W1998185176","https://openalex.org/W1998692213","https://openalex.org/W1999224877","https://openalex.org/W2034680838","https://openalex.org/W2061094822","https://openalex.org/W2062162460","https://openalex.org/W2069500900","https://openalex.org/W2071168379","https://openalex.org/W2072865070","https://openalex.org/W2073751101","https://openalex.org/W2088925327","https://openalex.org/W2089986715","https://openalex.org/W2094730750","https://openalex.org/W2121760611","https://openalex.org/W2129091841","https://openalex.org/W2132434872","https://openalex.org/W2154277396","https://openalex.org/W2166809896","https://openalex.org/W2214940380","https://openalex.org/W2963960354","https://openalex.org/W4214617048","https://openalex.org/W6688660404"],"related_works":["https://openalex.org/W2596232480","https://openalex.org/W2587775440","https://openalex.org/W2069254903","https://openalex.org/W3033558109","https://openalex.org/W2115030441","https://openalex.org/W2071297514","https://openalex.org/W2692144030","https://openalex.org/W2120744632","https://openalex.org/W2329542979","https://openalex.org/W2023400083"],"abstract_inverted_index":{"Most":[0],"biological":[1,53,80,157],"rhythms":[2],"are":[3,168],"generated":[4],"by":[5],"a":[6,67,114,146,172],"population":[7],"of":[8,33,78,117,150],"cellular":[9],"oscillators":[10,81],"coupled":[11],"through":[12],"intercellular":[13,34,119,131],"signaling.":[14],"Recent":[15],"experimental":[16],"evidence":[17],"shows":[18],"that":[19,97],"the":[20,27,31,46,58,75,83,94,98,104,107,118,123,130,134,178],"collective":[21,76,99,108,124,141],"period":[22,29,77,100,109,125,142],"may":[23,56,126],"differ":[24],"significantly":[25],"from":[26],"autonomous":[28],"in":[30,61,91,137,145,148,163],"presence":[32],"delays.":[35],"The":[36,140],"phenomenon":[37],"has":[38],"been":[39],"investigated":[40],"using":[41,82],"delay-coupled":[42,79],"phase":[43,48],"oscillators,":[44],"but":[45],"proposed":[47],"model":[49,175],"contains":[50],"no":[51],"direct":[52],"mechanism,":[54],"which":[55],"weaken":[57],"model's":[59],"reliability":[60],"unraveling":[62],"biophysical":[63],"principles.":[64],"Based":[65],"on":[66,171],"published":[68],"gene":[69],"regulatory":[70],"oscillator":[71],"model,":[72],"we":[73],"analyze":[74],"multivariable":[84],"harmonic":[85],"balance":[86],"technique.":[87],"We":[88],"prove":[89],"that,":[90],"contradiction":[92],"to":[93,112,176],"common":[95],"intuition":[96],"increases":[101],"linearly":[102],"with":[103,129],"coupling":[105],"delay,":[106],"turns":[110],"out":[111],"be":[113],"periodic":[115],"function":[116],"delay.":[120],"More":[121],"surprisingly,":[122],"even":[127],"decrease":[128],"delay":[132,135],"when":[133],"resides":[136],"certain":[138],"regions.":[139],"is":[143],"given":[144,169],"closed-form":[147],"terms":[149],"biochemical":[151],"reaction":[152],"constants":[153],"and":[154],"thus":[155],"provides":[156],"insights":[158],"as":[159,161],"well":[160],"guidance":[162],"synthetic-biological-oscillator":[164],"design.":[165],"Simulation":[166],"results":[167],"based":[170],"segmentation":[173],"clock":[174],"confirm":[177],"theoretical":[179],"predictions.":[180]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
