{"id":"https://openalex.org/W2109147051","doi":"https://doi.org/10.1109/sysose.2013.6575279","title":"A system based approach to construct a Kaposi sarcoma-associated herpesvirus (KSHV) specific pathway crosstalk network","display_name":"A system based approach to construct a Kaposi sarcoma-associated herpesvirus (KSHV) specific pathway crosstalk network","publication_year":2013,"publication_date":"2013-06-01","ids":{"openalex":"https://openalex.org/W2109147051","doi":"https://doi.org/10.1109/sysose.2013.6575279","mag":"2109147051"},"language":"en","primary_location":{"id":"doi:10.1109/sysose.2013.6575279","is_oa":false,"landing_page_url":"https://doi.org/10.1109/sysose.2013.6575279","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 8th International Conference on System of Systems Engineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084702490","display_name":"Amy Wafa Daali","orcid":null},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amy Wafa Daali","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Texas, San Antonio, San Antonio, TX, USA","Dept. of Electr. & Comput. Eng., One UTSA Circle, San Antonio, TX, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Texas, San Antonio, San Antonio, TX, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., One UTSA Circle, San Antonio, TX, USA","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yufei Huang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Texas, San Antonio, San Antonio, TX, USA","Dept. of Electr. & Comput. Eng., One UTSA Circle, San Antonio, TX, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Texas, San Antonio, San Antonio, TX, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., One UTSA Circle, San Antonio, TX, USA","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113537394","display_name":"Mo Jamshidi","orcid":null},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mo Jamshidi","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Texas, San Antonio, San Antonio, TX, USA","Dept. of Electr. & Comput. Eng., One UTSA Circle, San Antonio, TX, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Texas, San Antonio, San Antonio, TX, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., One UTSA Circle, San Antonio, TX, USA","institution_ids":["https://openalex.org/I45438204"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5084702490"],"corresponding_institution_ids":["https://openalex.org/I45438204"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09892475,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"1","issue":null,"first_page":"273","last_page":"278"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9771999716758728,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9757000207901001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crosstalk","display_name":"Crosstalk","score":0.6720200181007385},{"id":"https://openalex.org/keywords/sarcoma","display_name":"Sarcoma","score":0.6210169792175293},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5435722470283508},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4875916838645935},{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.44708895683288574},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.44340601563453674},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4213064908981323},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.40870052576065063},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.39287081360816956},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2455196976661682},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20661363005638123},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.17794004082679749}],"concepts":[{"id":"https://openalex.org/C169822122","wikidata":"https://www.wikidata.org/wiki/Q230187","display_name":"Crosstalk","level":2,"score":0.6720200181007385},{"id":"https://openalex.org/C2778256501","wikidata":"https://www.wikidata.org/wiki/Q223911","display_name":"Sarcoma","level":2,"score":0.6210169792175293},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5435722470283508},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4875916838645935},{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.44708895683288574},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.44340601563453674},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4213064908981323},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.40870052576065063},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.39287081360816956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2455196976661682},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20661363005638123},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.17794004082679749},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/sysose.2013.6575279","is_oa":false,"landing_page_url":"https://doi.org/10.1109/sysose.2013.6575279","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 8th International Conference on System of Systems Engineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.7400000095367432,"display_name":"Reduced inequalities"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1567392757","https://openalex.org/W1644749979","https://openalex.org/W2009501477","https://openalex.org/W2020302859","https://openalex.org/W2022820520","https://openalex.org/W2037010474","https://openalex.org/W2045982793","https://openalex.org/W2057545775","https://openalex.org/W2058221907","https://openalex.org/W2062533676","https://openalex.org/W2076710572","https://openalex.org/W2080719056","https://openalex.org/W2083045667","https://openalex.org/W2084545997","https://openalex.org/W2093326135","https://openalex.org/W2097498614","https://openalex.org/W2100980426","https://openalex.org/W2114830914","https://openalex.org/W2122630333","https://openalex.org/W2130410032","https://openalex.org/W2136850043","https://openalex.org/W2139070508","https://openalex.org/W2147566730","https://openalex.org/W2153624566","https://openalex.org/W2154947819","https://openalex.org/W2154972152","https://openalex.org/W2159675211","https://openalex.org/W2164727176","https://openalex.org/W2168264491","https://openalex.org/W2490364526","https://openalex.org/W6682474454"],"related_works":["https://openalex.org/W2060724872","https://openalex.org/W2082094785","https://openalex.org/W2202198356","https://openalex.org/W3087203342","https://openalex.org/W2377184161","https://openalex.org/W228984114","https://openalex.org/W2090026684","https://openalex.org/W4226360758","https://openalex.org/W2907567977","https://openalex.org/W3153861134"],"abstract_inverted_index":{"Kaposi's":[0,13,142],"sarcoma-associated":[1],"herpesvirus":[2],"(KSHV)":[3],"is":[4,111],"one":[5],"of":[6,19,36,56,59,70,72,94,141],"the":[7,34,106,112,139],"human":[8],"cancer":[9],"viruses":[10],"associated":[11],"with":[12],"sarcoma,":[14],"a":[15,54,61,67,83,89,117,123],"dominant":[16],"AIDS-related":[17],"tumor":[18],"endothelial":[20],"cells,":[21],"and":[22,44,78],"several":[23],"B-cell":[24],"malignancies.":[25],"Although":[26],"much":[27],"advancements":[28],"have":[29],"been":[30],"made":[31],"in":[32,47],"understanding":[33],"mechanism":[35],"KSHV,":[37],"signaling":[38],"pathways":[39],"activated":[40],"during":[41],"early":[42],"infection":[43],"their":[45],"functions":[46],"virus":[48],"entry":[49],"are":[50],"still":[51],"unclear.":[52],"From":[53],"system":[55,118],"systems":[57],"point":[58],"view,":[60],"pathway":[62,97],"can":[63],"be":[64],"viewed":[65],"as":[66,76,102,104],"biosystem":[68],"consisting":[69],"group":[71],"interacting":[73],"molecules":[74],"such":[75],"genes":[77],"proteins":[79],"to":[80,91,115,121,129],"carry":[81],"out":[82],"specific":[84,128],"biological":[85],"function.":[86],"We":[87],"developed":[88],"method":[90],"determine":[92],"clusters":[93],"functionally":[95],"related":[96],"at":[98],"different":[99],"time":[100],"conditions":[101],"well":[103],"identifying":[105],"significant":[107],"subnetworks.":[108],"This":[109],"article":[110],"first":[113],"known":[114],"present":[116],"based":[119],"analysis":[120],"infer":[122],"biologically":[124],"relevant":[125],"functional":[126],"network":[127,132],"KSHV.":[130],"Such":[131],"may":[133],"reveal":[134],"discriminative":[135],"subnetwork":[136],"markers":[137],"for":[138],"treatment":[140],"sarcoma.":[143]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
