{"id":"https://openalex.org/W3026698628","doi":"https://doi.org/10.1109/ssiai49293.2020.9094611","title":"Towards Understanding Speciation By Automated Extraction And Description Of 3d Foraminifera Stacks","display_name":"Towards Understanding Speciation By Automated Extraction And Description Of 3d Foraminifera Stacks","publication_year":2020,"publication_date":"2020-03-01","ids":{"openalex":"https://openalex.org/W3026698628","doi":"https://doi.org/10.1109/ssiai49293.2020.9094611","mag":"3026698628"},"language":"en","primary_location":{"id":"doi:10.1109/ssiai49293.2020.9094611","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ssiai49293.2020.9094611","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/conference_contribution/Towards_understanding_speciation_by_automated_extraction_and_description_of_3D_foraminifera_stacks/19433963","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078868849","display_name":"Wenshu Zhang","orcid":"https://orcid.org/0000-0003-0776-7709"},"institutions":[{"id":"https://openalex.org/I8408910","display_name":"Cardiff Metropolitan University","ror":"https://ror.org/00bqvf857","country_code":"GB","type":"education","lineage":["https://openalex.org/I8408910"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wenshu Zhang","raw_affiliation_strings":["Cardiff Metropolitan University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cardiff Metropolitan University","institution_ids":["https://openalex.org/I8408910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076981942","display_name":"Thomas H. G. Ezard","orcid":"https://orcid.org/0000-0001-8305-6605"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Ezard","raw_affiliation_strings":["University of Southampton"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southampton","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080904174","display_name":"Alex Searle\u2010Barnes","orcid":"https://orcid.org/0000-0003-0389-7717"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alex Searle-Barnes","raw_affiliation_strings":["University of Southampton"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southampton","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046495424","display_name":"Anieke Brombacher","orcid":"https://orcid.org/0000-0003-2310-047X"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anieke Brombacher","raw_affiliation_strings":["University of Southampton"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southampton","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082613480","display_name":"Orestis L. Katsamenis","orcid":"https://orcid.org/0000-0003-4367-4147"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Orestis Katsamenis","raw_affiliation_strings":["University of Southampton"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southampton","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014438135","display_name":"Mark Nixon","orcid":"https://orcid.org/0000-0002-9174-5934"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Nixon","raw_affiliation_strings":["University of Southampton"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southampton","institution_ids":["https://openalex.org/I43439940"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3762,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.55646715,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/foraminifera","display_name":"Foraminifera","score":0.941999077796936},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.6858173608779907},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5093072652816772},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.47601252794265747},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.44965696334838867},{"id":"https://openalex.org/keywords/signature","display_name":"Signature (topology)","score":0.4387952983379364},{"id":"https://openalex.org/keywords/plankton","display_name":"Plankton","score":0.42974650859832764},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38546639680862427},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3570835590362549},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.2705470323562622},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.17572832107543945},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09876808524131775}],"concepts":[{"id":"https://openalex.org/C2780368712","wikidata":"https://www.wikidata.org/wiki/Q107027","display_name":"Foraminifera","level":3,"score":0.941999077796936},{"id":"https://openalex.org/C2776838516","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.6858173608779907},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5093072652816772},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.47601252794265747},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.44965696334838867},{"id":"https://openalex.org/C2779696439","wikidata":"https://www.wikidata.org/wiki/Q7512811","display_name":"Signature (topology)","level":2,"score":0.4387952983379364},{"id":"https://openalex.org/C108469399","wikidata":"https://www.wikidata.org/wiki/Q25367","display_name":"Plankton","level":2,"score":0.42974650859832764},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38546639680862427},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3570835590362549},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.2705470323562622},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.17572832107543945},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09876808524131775},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C83042747","wikidata":"https://www.wikidata.org/wiki/Q686881","display_name":"Benthic zone","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/ssiai49293.2020.9094611","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ssiai49293.2020.9094611","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI)","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.soton.ac.uk:443881","is_oa":false,"landing_page_url":"https://eprints.soton.ac.uk/443881/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401020","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"},{"id":"pmh:oai:figshare.com:article/19433963","is_oa":true,"landing_page_url":"https://figshare.com/articles/conference_contribution/Towards_understanding_speciation_by_automated_extraction_and_description_of_3D_foraminifera_stacks/19433963","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference contribution"},{"id":"pmh:oai:repository.cardiffmet.ac.uk:10369/11108","is_oa":false,"landing_page_url":"http://hdl.handle.net/10369/11108","pdf_url":null,"source":{"id":"https://openalex.org/S4306401326","display_name":"Cardiff Metropolitan Research Repository (Cardiff Metropolitan University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I8408910","host_organization_name":"Cardiff Metropolitan University","host_organization_lineage":["https://openalex.org/I8408910"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference paper"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/19433963","is_oa":true,"landing_page_url":"https://figshare.com/articles/conference_contribution/Towards_understanding_speciation_by_automated_extraction_and_description_of_3D_foraminifera_stacks/19433963","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference contribution"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.8799999952316284}],"awards":[{"id":"https://openalex.org/G2870351777","display_name":null,"funder_award_id":"NE/J018163/1","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"},{"id":"https://openalex.org/G3986087527","display_name":null,"funder_award_id":"NE/P019269/1","funder_id":"https://openalex.org/F4320320022","funder_display_name":"Sight Research UK"},{"id":"https://openalex.org/G4305555796","display_name":null,"funder_award_id":"NE/J018163/1","funder_id":"https://openalex.org/F4320320022","funder_display_name":"Sight Research UK"},{"id":"https://openalex.org/G7411723363","display_name":null,"funder_award_id":"NE/P019269/1","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"}],"funders":[{"id":"https://openalex.org/F4320320022","display_name":"Sight Research UK","ror":"https://ror.org/03z2py885"},{"id":"https://openalex.org/F4320334631","display_name":"Natural Environment Research Council","ror":"https://ror.org/02b5d8509"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1482082397","https://openalex.org/W1901129140","https://openalex.org/W1989146507","https://openalex.org/W2003260632","https://openalex.org/W2056898574","https://openalex.org/W2099988966","https://openalex.org/W2102238397","https://openalex.org/W2104910083","https://openalex.org/W2161555991","https://openalex.org/W2170681361","https://openalex.org/W2187089797","https://openalex.org/W2608559052","https://openalex.org/W2750941149","https://openalex.org/W2785337623","https://openalex.org/W2785925687","https://openalex.org/W2884584803","https://openalex.org/W2908346744","https://openalex.org/W2911528471","https://openalex.org/W6639824700"],"related_works":["https://openalex.org/W2403591496","https://openalex.org/W2101305618","https://openalex.org/W4246227008","https://openalex.org/W3095955896","https://openalex.org/W2268450572","https://openalex.org/W4253819211","https://openalex.org/W3083054601","https://openalex.org/W1968279900","https://openalex.org/W2981462862","https://openalex.org/W2381930979"],"abstract_inverted_index":{"The":[0,31,119],"sheer":[1],"volume":[2],"of":[3,8,14,56,74,117,148,154,159,184],"3D":[4,155],"data":[5],"restricts":[6],"understanding":[7,137],"genetic":[9],"speciation":[10,164],"when":[11],"analyzing":[12,134],"specimens":[13],"planktonic":[15,35],"foraminifera":[16,76],"and":[17,28,59,85,140,170],"so":[18],"we":[19,161],"develop":[20],"an":[21,94],"end-to-end":[22],"computer":[23,123],"vision":[24,124],"system":[25],"to":[26,79,113,144,178],"solve":[27],"extend":[29],"this.":[30],"observed":[32],"fossils":[33],"are":[34,38,77],"foraminifera,":[36],"which":[37,96],"single-celled":[39],"organisms":[40],"that":[41,127,163,171],"live":[42],"in":[43,46,131],"vast":[44],"numbers":[45],"the":[47,81,145,182],"world's":[48],"oceans.":[49],"Each":[50],"foram":[51],"retains":[52],"a":[53,72,110],"complete":[54],"record":[55],"its":[57,65],"size":[58],"shape":[60,111,135],"at":[61],"each":[62,103],"stage":[63],"along":[64],"journey":[66],"through":[67],"life.":[68,185],"In":[69],"this":[70,141],"study,":[71],"variety":[73],"individual":[75,100],"analyzed":[78,169],"study":[80],"differences":[82],"among":[83],"them":[84],"compared":[86],"with":[87],"manually":[88],"labelled":[89],"ground":[90],"truth.":[91],"This":[92],"is":[93,142],"approach":[95],"(i)":[97],"automatically":[98],"reconstructs":[99],"chambers":[101],"for":[102],"specimen":[104],"from":[105,174],"image":[106],"sequences,":[107],"(ii)":[108],"uses":[109],"signature":[112],"describe":[114],"different":[115],"types":[116],"species.":[118],"automated":[120,172],"analysis":[121,147,173],"by":[122],"gives":[125],"insight":[126,180],"was":[128],"hitherto":[129],"unavailable":[130],"biological":[132,146],"analysis:":[133],"implies":[136],"spatial":[138],"arrangement":[139],"new":[143,179],"these":[149],"specimens.":[150],"By":[151],"processing":[152],"datasets":[153],"samples":[156],"containing":[157],"9GB":[158],"points,":[160],"show":[162],"can":[165],"indeed":[166],"now":[167],"be":[168],"morphological":[175],"features":[176],"leads":[177],"into":[181],"origins":[183]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}