{"id":"https://openalex.org/W2146258444","doi":"https://doi.org/10.1109/ssdm.2002.1029699","title":"A structure-based search engine for phylogenetic databases","display_name":"A structure-based search engine for phylogenetic databases","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W2146258444","doi":"https://doi.org/10.1109/ssdm.2002.1029699","mag":"2146258444"},"language":"en","primary_location":{"id":"doi:10.1109/ssdm.2002.1029699","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ssdm.2002.1029699","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 14th International Conference on Scientific and Statistical Database Management","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025086626","display_name":"Huiyuan Shan","orcid":null},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huiyuan Shan","raw_affiliation_strings":["Department of Computer Science, New Jersey Institute of Technology, USA","Department of Computer Science; New Jersey Institute of Technology; Newark NJ USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Jersey Institute of Technology, USA","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"Department of Computer Science; New Jersey Institute of Technology; Newark NJ USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090641466","display_name":"Katherine G. Herbert","orcid":"https://orcid.org/0000-0001-6663-8187"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K.G. Herbert","raw_affiliation_strings":["Department of Computer Science, New Jersey Institute of Technology, USA","Department of Computer Science; New Jersey Institute of Technology; Newark NJ USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Jersey Institute of Technology, USA","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"Department of Computer Science; New Jersey Institute of Technology; Newark NJ USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068494351","display_name":"William H. Piel","orcid":"https://orcid.org/0000-0002-0429-9797"},"institutions":[{"id":"https://openalex.org/I115441956","display_name":"Buffalo State University","ror":"https://ror.org/05ms04m92","country_code":"US","type":"education","lineage":["https://openalex.org/I115441956"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W.H. Piel","raw_affiliation_strings":["Department Biol. Sci, State University of New York, University at Buffalo, Buffalo, NY, USA","SUNY Buffalo"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Biol. Sci, State University of New York, University at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737","https://openalex.org/I57206974"]},{"raw_affiliation_string":"SUNY Buffalo","institution_ids":["https://openalex.org/I115441956","https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055576104","display_name":"Dennis Shasha","orcid":"https://orcid.org/0000-0002-7036-3312"},"institutions":[{"id":"https://openalex.org/I36672615","display_name":"Courant Institute of Mathematical Sciences","ror":"https://ror.org/037tm7f56","country_code":"US","type":"education","lineage":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Shasha","raw_affiliation_strings":["Courant Institute of Mathematical Sciences, New York University, New York, NY, USA","New York University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Courant Institute of Mathematical Sciences, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"raw_affiliation_string":"New York University","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110106915","display_name":"J.T.L. Wang","orcid":"https://orcid.org/0009-0007-9928-980X"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J.T.L. Wang","raw_affiliation_strings":["College of Computing Sciences, New Jersey Institute of Technology, Newark, NJ, USA","New Jersey Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computing Sciences, New Jersey Institute of Technology, Newark, NJ, USA","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"New Jersey Institute of Technology","institution_ids":["https://openalex.org/I118118575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.802,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.70610375,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"7","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9739999771118164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7368496656417847},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6827786564826965},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.6477270722389221},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6141024827957153},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5090065002441406},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.4652230441570282},{"id":"https://openalex.org/keywords/web-search-query","display_name":"Web search query","score":0.44676458835601807},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4064008593559265},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17775219678878784},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.09112104773521423},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08266696333885193}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7368496656417847},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6827786564826965},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.6477270722389221},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6141024827957153},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5090065002441406},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.4652230441570282},{"id":"https://openalex.org/C164120249","wikidata":"https://www.wikidata.org/wiki/Q995982","display_name":"Web search query","level":3,"score":0.44676458835601807},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4064008593559265},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17775219678878784},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.09112104773521423},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08266696333885193},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/ssdm.2002.1029699","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ssdm.2002.1029699","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 14th International Conference on Scientific and Statistical Database Management","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.79.7701","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.79.7701","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cis.njit.edu/~jason/publications/ARTICLES/ssdbm2002demo.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.8.9692","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.8.9692","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://web.njit.edu/~wangj/publications/ARTICLES/ssdbm2002demo.ps","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1967118885","https://openalex.org/W2017719595","https://openalex.org/W2050137450","https://openalex.org/W2057294899","https://openalex.org/W2080541436","https://openalex.org/W2094277888","https://openalex.org/W2145805921","https://openalex.org/W2153546136","https://openalex.org/W2166814309","https://openalex.org/W4212948396","https://openalex.org/W6654813271"],"related_works":["https://openalex.org/W2362218761","https://openalex.org/W2113708670","https://openalex.org/W2062354928","https://openalex.org/W2088120817","https://openalex.org/W2158340599","https://openalex.org/W2533706070","https://openalex.org/W2184474188","https://openalex.org/W3094024929","https://openalex.org/W2066869521","https://openalex.org/W2105258824"],"abstract_inverted_index":{"Phylogenetic":[0],"trees":[1,70],"are":[2],"essential":[3],"for":[4,17,69],"understanding":[5],"the":[6,14,22,52,73,87],"relationships":[7],"among":[8],"organisms":[9],"or":[10,29,35,59],"taxa.":[11,42],"Many":[12],"of":[13,41],"current":[15],"techniques":[16],"searching":[18],"phylogenetic":[19,67],"repositories":[20],"allow":[21],"user":[23,53],"to":[24,36,54],"perform":[25],"a":[26,38,46,60,66],"keyword-type":[27],"search":[28,48,78],"an":[30,56],"aligned":[31],"sequence":[32],"data":[33],"search,":[34],"browse":[37],"hierarchical":[39],"list":[40],"Here":[43],"we":[44],"describe":[45],"new":[47],"engine":[49,79],"that":[50,71],"allows":[51],"present":[55],"example":[57],"phylogeny,":[58],"query":[61,74],"tree,":[62],"and":[63,83],"then":[64],"searches":[65],"database":[68],"contain":[72],"structure.":[75],"The":[76],"presented":[77],"is":[80,84],"fully":[81],"operational":[82],"available":[85],"on":[86],"World":[88],"Wide":[89],"Web.":[90]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
