{"id":"https://openalex.org/W2091744858","doi":"https://doi.org/10.1109/socpar.2010.5686492","title":"Parallel AlineaGA: An island parallel evolutionary algorithm for multiple sequence alignment","display_name":"Parallel AlineaGA: An island parallel evolutionary algorithm for multiple sequence alignment","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2091744858","doi":"https://doi.org/10.1109/socpar.2010.5686492","mag":"2091744858"},"language":"en","primary_location":{"id":"doi:10.1109/socpar.2010.5686492","is_oa":false,"landing_page_url":"https://doi.org/10.1109/socpar.2010.5686492","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 International Conference of Soft Computing and Pattern Recognition","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100363369","display_name":"Fernando Silva","orcid":"https://orcid.org/0000-0001-9335-1851"},"institutions":[{"id":"https://openalex.org/I169427155","display_name":"Instituto Polit\u00e9cnico de Leiria","ror":"https://ror.org/010dvvh94","country_code":"PT","type":"education","lineage":["https://openalex.org/I169427155"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Fernando Jose Mateus da Silva","raw_affiliation_strings":["School of Technology and Management, Polytechnic Institute of Leiria, Leiria, Portugal"],"affiliations":[{"raw_affiliation_string":"School of Technology and Management, Polytechnic Institute of Leiria, Leiria, Portugal","institution_ids":["https://openalex.org/I169427155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103914893","display_name":"Juan Manuel S\u00e1nchez P\u00e9rez","orcid":"https://orcid.org/0000-0001-5054-3204"},"institutions":[{"id":"https://openalex.org/I169427155","display_name":"Instituto Polit\u00e9cnico de Leiria","ror":"https://ror.org/010dvvh94","country_code":"PT","type":"education","lineage":["https://openalex.org/I169427155"]},{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]}],"countries":["ES","PT"],"is_corresponding":false,"raw_author_name":"Juan Manuel Sanchez Perez","raw_affiliation_strings":["Department Tecnolog\u00edas Computadores y Comunicaciones Escuela Polit\u00e9cnica, Universidad de Extremadura, Caceres, Spain","School of Technology and Management, Polytechnic Institute of Leiria, Leiria, Portugal"],"affiliations":[{"raw_affiliation_string":"Department Tecnolog\u00edas Computadores y Comunicaciones Escuela Polit\u00e9cnica, Universidad de Extremadura, Caceres, Spain","institution_ids":["https://openalex.org/I80606768"]},{"raw_affiliation_string":"School of Technology and Management, Polytechnic Institute of Leiria, Leiria, Portugal","institution_ids":["https://openalex.org/I169427155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059757284","display_name":"Juan A. G\u00f3mez\u2010Pulido","orcid":"https://orcid.org/0000-0002-0441-9402"},"institutions":[{"id":"https://openalex.org/I169427155","display_name":"Instituto Polit\u00e9cnico de Leiria","ror":"https://ror.org/010dvvh94","country_code":"PT","type":"education","lineage":["https://openalex.org/I169427155"]},{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]}],"countries":["ES","PT"],"is_corresponding":false,"raw_author_name":"Juan Antonio Gomez Pulido","raw_affiliation_strings":["Department Tecnolog\u00edas Computadores y Comunicaciones Escuela Polit\u00e9cnica, Universidad de Extremadura, Caceres, Spain","School of Technology and Management, Polytechnic Institute of Leiria, Leiria, Portugal"],"affiliations":[{"raw_affiliation_string":"Department Tecnolog\u00edas Computadores y Comunicaciones Escuela Polit\u00e9cnica, Universidad de Extremadura, Caceres, Spain","institution_ids":["https://openalex.org/I80606768"]},{"raw_affiliation_string":"School of Technology and Management, Polytechnic Institute of Leiria, Leiria, Portugal","institution_ids":["https://openalex.org/I169427155"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049408851","display_name":"Miguel A. Vega\u2010Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-3003-758X"},"institutions":[{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]},{"id":"https://openalex.org/I169427155","display_name":"Instituto Polit\u00e9cnico de Leiria","ror":"https://ror.org/010dvvh94","country_code":"PT","type":"education","lineage":["https://openalex.org/I169427155"]}],"countries":["ES","PT"],"is_corresponding":false,"raw_author_name":"Miguel A. Vega Rodriguez","raw_affiliation_strings":["Department Tecnolog\u00edas Computadores y Comunicaciones Escuela Polit\u00e9cnica, Universidad de Extremadura, Caceres, Spain","School of Technology and Management, Polytechnic Institute of Leiria, Leiria, Portugal"],"affiliations":[{"raw_affiliation_string":"Department Tecnolog\u00edas Computadores y Comunicaciones Escuela Polit\u00e9cnica, Universidad de Extremadura, Caceres, Spain","institution_ids":["https://openalex.org/I80606768"]},{"raw_affiliation_string":"School of Technology and Management, Polytechnic Institute of Leiria, Leiria, Portugal","institution_ids":["https://openalex.org/I169427155"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100363369"],"corresponding_institution_ids":["https://openalex.org/I169427155"],"apc_list":null,"apc_paid":null,"fwci":2.2552,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.89470227,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"279","last_page":"284"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9587000012397766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6905423402786255},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6680265665054321},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5720790028572083},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5688003897666931},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5423174500465393},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5200309753417969},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.513861894607544},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.5122377276420593},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.4727020263671875},{"id":"https://openalex.org/keywords/parallel-algorithm","display_name":"Parallel algorithm","score":0.46141326427459717},{"id":"https://openalex.org/keywords/local-search","display_name":"Local search (optimization)","score":0.4127395749092102},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3223549425601959},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2640267014503479},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.15537583827972412}],"concepts":[{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6905423402786255},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6680265665054321},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5720790028572083},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5688003897666931},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5423174500465393},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5200309753417969},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.513861894607544},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.5122377276420593},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.4727020263671875},{"id":"https://openalex.org/C120373497","wikidata":"https://www.wikidata.org/wiki/Q1087987","display_name":"Parallel algorithm","level":2,"score":0.46141326427459717},{"id":"https://openalex.org/C135320971","wikidata":"https://www.wikidata.org/wiki/Q1868524","display_name":"Local search (optimization)","level":2,"score":0.4127395749092102},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3223549425601959},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2640267014503479},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.15537583827972412},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/socpar.2010.5686492","is_oa":false,"landing_page_url":"https://doi.org/10.1109/socpar.2010.5686492","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 International Conference of Soft Computing and Pattern Recognition","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W58814538","https://openalex.org/W155968654","https://openalex.org/W1036195498","https://openalex.org/W1484713061","https://openalex.org/W1497256448","https://openalex.org/W1510543252","https://openalex.org/W1573357580","https://openalex.org/W1851749474","https://openalex.org/W1991319607","https://openalex.org/W2018975235","https://openalex.org/W2039482267","https://openalex.org/W2063937408","https://openalex.org/W2103138948","https://openalex.org/W2107590122","https://openalex.org/W2108187446","https://openalex.org/W2134954564","https://openalex.org/W2137015675","https://openalex.org/W2144362290","https://openalex.org/W2151163048","https://openalex.org/W2152150600","https://openalex.org/W2154846630","https://openalex.org/W2156416250","https://openalex.org/W2163860567","https://openalex.org/W3023540311","https://openalex.org/W4230798657","https://openalex.org/W4246367117","https://openalex.org/W4285719527","https://openalex.org/W6602369343","https://openalex.org/W6606305083","https://openalex.org/W6629610141"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2149492307","https://openalex.org/W1985408726","https://openalex.org/W1989397826"],"abstract_inverted_index":{"Multiple":[0],"sequence":[1,109],"alignment":[2,33],"is":[3,39,101],"the":[4,18,21,31,43,48,63,67,72,75,78,81,93,150,153,172,178,181],"base":[5],"of":[6,10,20,37,47,57,66,74,80,95,119,180],"a":[7,35,55,113,124],"growing":[8],"number":[9],"Bioinformatics":[11],"applications.":[12],"This":[13],"does":[14],"not":[15],"mean":[16],"that":[17,86,167],"accuracy":[19],"existing":[22],"methods":[23],"corresponds":[24],"to":[25],"biologically":[26],"faultless":[27],"alignments.":[28],"Searching":[29],"for":[30,34,105,152,174,177],"optimal":[32],"set":[36],"sequences":[38],"often":[40],"hindered":[41],"by":[42,83,92],"size":[44],"and":[45,77,164],"complexity":[46],"search":[49,76,127,151,173],"space.":[50],"Parallel":[51,168],"Genetic":[52,98,114],"Algorithms":[53],"are":[54,87],"class":[56],"stochastic":[58],"algorithms":[59],"which":[60,117,135],"can":[61,170],"increase":[62],"speed":[64],"up":[65],"algorithms.":[68],"They":[69],"also":[70,158],"enhance":[71],"efficiency":[73],"robustness":[79],"solutions":[82,176],"delivering":[84],"results":[85],"better":[88,175],"than":[89],"those":[90],"provided":[91],"sum":[94],"several":[96],"sequential":[97,142],"Algorithms.":[99],"AlineaGA":[100,169],"an":[102,147],"evolutionary":[103],"method":[104],"solving":[106],"protein":[107],"multiple":[108],"alignment.":[110],"It":[111],"uses":[112],"Algorithm":[115],"on":[116],"some":[118],"its":[120,132,141,160],"genetic":[121],"operators":[122],"embed":[123],"simple":[125],"local":[126],"optimization.":[128],"We":[129,156],"have":[130,145,157],"implemented":[131],"parallel":[133],"version":[134,143],"we":[136,144],"now":[137],"present.":[138],"Comparing":[139],"with":[140,162],"observed":[146],"improvement":[148],"in":[149,183],"best":[154],"solution.":[155],"compared":[159],"performance":[161],"ClustalW2":[163],"T-Coffee,":[165],"observing":[166],"lead":[171],"majority":[179],"datasets":[182],"study.":[184]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
