{"id":"https://openalex.org/W2996619863","doi":"https://doi.org/10.1109/snams.2019.8931828","title":"Agile Natural Language Processing Model for Pathology Knowledge Extraction and Integration with Clinical Enterprise Data Warehouse","display_name":"Agile Natural Language Processing Model for Pathology Knowledge Extraction and Integration with Clinical Enterprise Data Warehouse","publication_year":2019,"publication_date":"2019-10-01","ids":{"openalex":"https://openalex.org/W2996619863","doi":"https://doi.org/10.1109/snams.2019.8931828","mag":"2996619863"},"language":"en","primary_location":{"id":"doi:10.1109/snams.2019.8931828","is_oa":false,"landing_page_url":"https://doi.org/10.1109/snams.2019.8931828","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 Sixth International Conference on Social Networks Analysis, Management and Security (SNAMS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004596838","display_name":"Ahmad Baghal","orcid":"https://orcid.org/0000-0003-0389-0021"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ahmad Baghal","raw_affiliation_strings":["Biomedical informatics, College of Medicine, University of Arkansas form Medical Sciences, Little Rock, Arkansas, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical informatics, College of Medicine, University of Arkansas form Medical Sciences, Little Rock, Arkansas, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028118511","display_name":"Shaymaa Al\u2010Shukri","orcid":"https://orcid.org/0000-0001-8587-9189"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaymaa Al-Shukri","raw_affiliation_strings":["Biomedical informatics, College of Medicine, University of Arkansas form Medical Sciences, Little Rock, Arkansas, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical informatics, College of Medicine, University of Arkansas form Medical Sciences, Little Rock, Arkansas, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059273634","display_name":"Annu Kumari","orcid":null},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Annu Kumari","raw_affiliation_strings":["Biomedical informatics, College of Medicine, University of Arkansas form Medical Sciences, Little Rock, Arkansas, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical informatics, College of Medicine, University of Arkansas form Medical Sciences, Little Rock, Arkansas, USA","institution_ids":["https://openalex.org/I79620101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004596838"],"corresponding_institution_ids":["https://openalex.org/I79620101"],"apc_list":null,"apc_paid":null,"fwci":0.2557,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.57019152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"8","issue":null,"first_page":"419","last_page":"422"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.812123715877533},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.7145576477050781},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5792239904403687},{"id":"https://openalex.org/keywords/agile-software-development","display_name":"Agile software development","score":0.5722559690475464},{"id":"https://openalex.org/keywords/medical-diagnosis","display_name":"Medical diagnosis","score":0.5372040271759033},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5093992352485657},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5083228945732117},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.4877665638923645},{"id":"https://openalex.org/keywords/unstructured-data","display_name":"Unstructured data","score":0.45913273096084595},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.42880862951278687},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3929367959499359},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3230532109737396},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2860208749771118},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2718576490879059},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19458085298538208},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.19113856554031372},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.17326855659484863},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.16148507595062256}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.812123715877533},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.7145576477050781},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5792239904403687},{"id":"https://openalex.org/C14185376","wikidata":"https://www.wikidata.org/wiki/Q30232","display_name":"Agile software development","level":2,"score":0.5722559690475464},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.5372040271759033},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5093992352485657},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5083228945732117},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.4877665638923645},{"id":"https://openalex.org/C2781252014","wikidata":"https://www.wikidata.org/wiki/Q1141900","display_name":"Unstructured data","level":3,"score":0.45913273096084595},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.42880862951278687},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3929367959499359},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3230532109737396},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2860208749771118},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2718576490879059},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19458085298538208},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.19113856554031372},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.17326855659484863},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.16148507595062256},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/snams.2019.8931828","is_oa":false,"landing_page_url":"https://doi.org/10.1109/snams.2019.8931828","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 Sixth International Conference on Social Networks Analysis, Management and Security (SNAMS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7200000286102295,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W45867036","https://openalex.org/W91168480","https://openalex.org/W169448231","https://openalex.org/W1512103355","https://openalex.org/W1521626219","https://openalex.org/W1637593105","https://openalex.org/W2114388055","https://openalex.org/W2146089916","https://openalex.org/W2611254939","https://openalex.org/W2768488789","https://openalex.org/W2769851464","https://openalex.org/W2942217618","https://openalex.org/W2942420282","https://openalex.org/W2949479579","https://openalex.org/W6601805350","https://openalex.org/W6603770516","https://openalex.org/W6630714952","https://openalex.org/W6636672007","https://openalex.org/W6761585737","https://openalex.org/W6762199980"],"related_works":["https://openalex.org/W3116168327","https://openalex.org/W2364409751","https://openalex.org/W2359411520","https://openalex.org/W1503556420","https://openalex.org/W2030910246","https://openalex.org/W2363759074","https://openalex.org/W2361930117","https://openalex.org/W4389912246","https://openalex.org/W4401882581","https://openalex.org/W2982149480"],"abstract_inverted_index":{"Electronic":[0],"Medical":[1],"Record":[2],"(EMR)":[3],"systems":[4],"store":[5,30],"patients'":[6],"medical":[7,169],"information":[8,33,66],"in":[9,43,53,59,99,146,165],"either":[10],"structured":[11,56],"or":[12],"unstructured,":[13],"free-text":[14],"format":[15],"such":[16,34],"as":[17,35],"clinical":[18,26,44],"reports.":[19],"Pathology":[20],"notes":[21],"are":[22],"a":[23],"type":[24],"of":[25,39,51,64,87,106,121,151],"reports":[27],"that":[28],"may":[29],"cancer":[31],"related":[32],"diagnoses":[36],"and":[37,72,92,135,144,157],"description":[38],"tissue":[40],"sample.":[41],"Data":[42],"documents":[45,68,91],"can":[46,69],"provide":[47,112],"up":[48],"to":[49,55,84,93,133],"20%":[50],"knowledge":[52],"addition":[54],"data":[57,96,102,138,163],"stored":[58,98,164],"discrete":[60],"fields.":[61],"The":[62,149],"process":[63],"extracting":[65,122],"from":[67,89,140],"be":[70],"time-consuming":[71],"non-trivial.":[73],"We":[74],"evaluated":[75,108,156],"several":[76],"natural":[77],"language":[78],"processing":[79],"(NLP)":[80],"open":[81],"source":[82],"tools":[83,111],"extract":[85,136],"terms":[86,159],"interest":[88],"pathology":[90,124,137,141],"incorporate":[94],"with":[95,162],"already":[97],"the":[100,107,147,152,166],"institutional":[101,167],"warehouse":[103],"(EDW).":[104],"Many":[105],"NLP":[109],"software":[110],"various":[113],"features,":[114],"but":[115],"none":[116],"suites":[117],"our":[118,129],"immediate":[119],"need":[120],"key":[123],"terms.":[125],"This":[126],"paper":[127],"discusses":[128],"in-house":[130],"developed":[131],"framework":[132],"identify":[134],"points":[139],"documents,":[142],"curate,":[143],"load":[145],"EDW.":[148],"performance":[150],"proposed":[153],"model":[154],"was":[155],"extracted":[158],"were":[160],"validated":[161],"electronic":[168],"record":[170],"system.":[171]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
