{"id":"https://openalex.org/W4406612969","doi":"https://doi.org/10.1109/smc54092.2024.10831429","title":"Protein-Protein Interaction Prediction Models Based on Graph Neural Networks","display_name":"Protein-Protein Interaction Prediction Models Based on Graph Neural Networks","publication_year":2024,"publication_date":"2024-10-06","ids":{"openalex":"https://openalex.org/W4406612969","doi":"https://doi.org/10.1109/smc54092.2024.10831429"},"language":"en","primary_location":{"id":"doi:10.1109/smc54092.2024.10831429","is_oa":false,"landing_page_url":"https://doi.org/10.1109/smc54092.2024.10831429","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Systems, Man, and Cybernetics (SMC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100404456","display_name":"Yapeng Li","orcid":"https://orcid.org/0000-0001-5819-3632"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yapeng Li","raw_affiliation_strings":["Chongqing University of Posts and Telecommunications,Chongqing Key Laboratory of Computational Intelligence,Chongqing,China,400065"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing University of Posts and Telecommunications,Chongqing Key Laboratory of Computational Intelligence,Chongqing,China,400065","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101418881","display_name":"Jie Yang","orcid":"https://orcid.org/0000-0002-5465-6772"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Yang","raw_affiliation_strings":["Chongqing University of Posts and Telecommunications,Chongqing Key Laboratory of Computational Intelligence,Chongqing,China,400065"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing University of Posts and Telecommunications,Chongqing Key Laboratory of Computational Intelligence,Chongqing,China,400065","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038177250","display_name":"Yu\u2010Wen Chen","orcid":"https://orcid.org/0000-0001-7560-2127"},"institutions":[{"id":"https://openalex.org/I4210123021","display_name":"Chongqing Institute of Green and Intelligent Technology","ror":"https://ror.org/031npqv35","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210123021"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuwen Chen","raw_affiliation_strings":["Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences (CAS),Chongqing,China,400714"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences (CAS),Chongqing,China,400714","institution_ids":["https://openalex.org/I4210123021"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.7617,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.93874304,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"3378","last_page":"3383"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9743000268936157,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9743000268936157,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7138099074363708},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5032581686973572},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42747095227241516},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41393378376960754},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36250802874565125},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.23152822256088257}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7138099074363708},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5032581686973572},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42747095227241516},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41393378376960754},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36250802874565125},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.23152822256088257}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/smc54092.2024.10831429","is_oa":false,"landing_page_url":"https://doi.org/10.1109/smc54092.2024.10831429","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Systems, Man, and Cybernetics (SMC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6906320916","display_name":null,"funder_award_id":"CSTB2024NSCQ-MSX1043","funder_id":"https://openalex.org/F4320323172","funder_display_name":"Natural Science Foundation of Chongqing"},{"id":"https://openalex.org/G770670991","display_name":"\u57fa\u4e8e\u65b0\u578b\u8ba4\u77e5\u673a\u7406\u7684\u4e09\u652f\u51b3\u7b56\u6a21\u578b\u4e0e\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62066049","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323172","display_name":"Natural Science Foundation of Chongqing","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W2344144945","https://openalex.org/W2618265628","https://openalex.org/W2795471740","https://openalex.org/W2890911678","https://openalex.org/W2913140248","https://openalex.org/W2957436444","https://openalex.org/W3112376646","https://openalex.org/W3133990556","https://openalex.org/W3188887004","https://openalex.org/W4200597037","https://openalex.org/W4283019243","https://openalex.org/W4283586679","https://openalex.org/W4310862596","https://openalex.org/W4316661284","https://openalex.org/W4317802023","https://openalex.org/W4319990429","https://openalex.org/W4323055202","https://openalex.org/W4327662601","https://openalex.org/W4328007445","https://openalex.org/W4362003603","https://openalex.org/W4375928910","https://openalex.org/W4378804693","https://openalex.org/W4382239901","https://openalex.org/W4383899689","https://openalex.org/W4386811891","https://openalex.org/W4388520280","https://openalex.org/W4389776655"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1,132],"(PPIs)":[2],"are":[3,13,135,181],"the":[4,81,122,130,148,153,164,174],"foundation":[5],"for":[6,15,33,61,76,188],"numerous":[7,26],"biological":[8],"processes":[9],"within":[10,152],"cells,":[11],"which":[12],"crucial":[14],"understanding":[16],"cellular":[17],"signaling":[18],"networks,":[19],"disease":[20],"mechanisms,":[21],"and":[22,47,59,101,124,141,177,186,208],"drug":[23],"development.":[24],"Recently,":[25],"artificial":[27],"intelligence":[28],"(AI)-based":[29],"approaches":[30,39],"have":[31],"emerged":[32],"predicting":[34],"PPIs.":[35],"Nevertheless,":[36],"existing":[37],"AI-based":[38],"either":[40],"partially":[41],"or":[42],"loosely":[43],"consider":[44],"these":[45],"relationships":[46,100],"mechanisms":[48,102],"by":[49,96,168,191],"a":[50,112,138,157],"non-end-to-end":[51],"learning":[52],"framework,":[53],"resulting":[54],"in":[55],"sub-optimal":[56],"feature":[57,175],"extractions":[58,176],"fusions":[60,178],"prediction.":[62,189],"To":[63],"address":[64],"this":[65,67],"issue,":[66],"paper":[68],"proposes":[69],"an":[70],"end-to-end":[71,169],"graph":[72,113],"neural":[73,114],"network":[74,92,115],"model":[75],"protein-protein":[77],"interaction":[78],"prediction,":[79],"termed":[80],"Knowledge":[82],"Graph":[83,85],"Fused":[84],"Neural":[86],"Network":[87],"(KGF-GNN).":[88],"First,":[89],"protein":[90,108],"associated":[91],"(PAN)":[93],"is":[94,117,144,160],"constructed":[95,136],"comprehensively":[97],"exploiting":[98],"protein-associated":[99],"among":[103],"drugs,":[104],"diseases,":[105],"ribonucleic":[106],"acid,":[107],"structures,":[109],"etc.":[110],"Then,":[111],"(GNN)":[116],"built":[118,145],"to":[119,146,162,183],"extract":[120,147],"both":[121],"topological":[123,150],"semantic":[125],"features":[126,151,167],"from":[127],"PAN.":[128],"Secondly,":[129],"observed":[131],"between":[133],"proteins":[134],"into":[137],"PPI":[139,154,197],"network,":[140],"another":[142],"GNN":[143],"hidden":[149],"network.":[155],"Third,":[156],"multi-layer":[158],"perceptron":[159],"designed":[161],"fuse":[163],"extracted":[165],"various":[166],"learning.":[170],"With":[171],"such":[172],"designs,":[173],"of":[179],"PPIs":[180,207],"guaranteed":[182],"be":[184],"comprehensive":[185],"optimal":[187],"Finally,":[190],"conducting":[192],"extensive":[193],"experiments":[194],"on":[195],"real":[196],"datasets,":[198],"we":[199],"demonstrate":[200],"that":[201],"our":[202],"KGF-GNN":[203],"can":[204],"accurately":[205],"predict":[206],"significantly":[209],"outperform":[210],"state-of-the-art":[211],"models.":[212]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
