{"id":"https://openalex.org/W4400908949","doi":"https://doi.org/10.1109/siu61531.2024.10601144","title":"Metagenomic Data Analysis with Machine Learning to Discover Colorectal Cancer-Associated Enzymes","display_name":"Metagenomic Data Analysis with Machine Learning to Discover Colorectal Cancer-Associated Enzymes","publication_year":2024,"publication_date":"2024-05-15","ids":{"openalex":"https://openalex.org/W4400908949","doi":"https://doi.org/10.1109/siu61531.2024.10601144"},"language":"en","primary_location":{"id":"doi:10.1109/siu61531.2024.10601144","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/siu61531.2024.10601144","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 32nd Signal Processing and Communications Applications Conference (SIU)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026004921","display_name":"Nur \u015eebnem Ers\u00f6z","orcid":"https://orcid.org/0000-0003-3343-9936"},"institutions":[{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Nur Sebnem Ersoz","raw_affiliation_strings":["Abdullah Gul University,Faculty of Life and Natural Science,Department of Bioengineering,Kayseri,Turkey"],"affiliations":[{"raw_affiliation_string":"Abdullah Gul University,Faculty of Life and Natural Science,Department of Bioengineering,Kayseri,Turkey","institution_ids":["https://openalex.org/I95293974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045376875","display_name":"Cihan Kuzudisli","orcid":"https://orcid.org/0000-0003-4774-152X"},"institutions":[{"id":"https://openalex.org/I4210154391","display_name":"Hasan Kalyoncu University","ror":"https://ror.org/054g2pw49","country_code":"TR","type":"education","lineage":["https://openalex.org/I4210154391"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Cihan Kuzudisli","raw_affiliation_strings":["Hasan Kalyoncu University,Faculty of Engineering,Department of Computer Engineering,Gaziantep,Turkey"],"affiliations":[{"raw_affiliation_string":"Hasan Kalyoncu University,Faculty of Engineering,Department of Computer Engineering,Gaziantep,Turkey","institution_ids":["https://openalex.org/I4210154391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091900270","display_name":"Malik Yousef","orcid":"https://orcid.org/0000-0001-8780-6303"},"institutions":[{"id":"https://openalex.org/I4210138950","display_name":"Zefat Academic College","ror":"https://ror.org/03syp5w68","country_code":"IL","type":"education","lineage":["https://openalex.org/I4210138950"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Malik Yousef","raw_affiliation_strings":["Galilee Digital Health Research Center Zefat Academic College,Department of Information Systems,Zefat,Israel"],"affiliations":[{"raw_affiliation_string":"Galilee Digital Health Research Center Zefat Academic College,Department of Information Systems,Zefat,Israel","institution_ids":["https://openalex.org/I4210138950"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046915342","display_name":"Burcu Bak\u0131r-G\u00fcng\u00f6r","orcid":"https://orcid.org/0000-0002-2272-6270"},"institutions":[{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Burcu Bakir-Gungor","raw_affiliation_strings":["Abdullah Gul University,Faculty of Engineering,Department of Computer Engineering,Kayseri,Turkey"],"affiliations":[{"raw_affiliation_string":"Abdullah Gul University,Faculty of Engineering,Department of Computer Engineering,Kayseri,Turkey","institution_ids":["https://openalex.org/I95293974"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5026004921"],"corresponding_institution_ids":["https://openalex.org/I95293974"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10669594,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9294999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9294999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8353938460350037},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.641956090927124},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.6361672878265381},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44758808612823486},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40219584107398987},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3829388916492462},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35433268547058105},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3384028673171997},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3063037097454071},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2119928002357483},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10065972805023193},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08682617545127869}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8353938460350037},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.641956090927124},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.6361672878265381},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44758808612823486},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40219584107398987},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3829388916492462},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35433268547058105},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3384028673171997},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3063037097454071},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2119928002357483},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10065972805023193},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08682617545127869}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/siu61531.2024.10601144","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/siu61531.2024.10601144","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 32nd Signal Processing and Communications Applications Conference (SIU)","raw_type":"proceedings-article"},{"id":"pmh:oai:openaccess.hku.edu.tr:20.500.11782/4361","is_oa":false,"landing_page_url":"https://doi.org/10.1109/SIU61531.2024.10601144.","pdf_url":null,"source":{"id":"https://openalex.org/S4306401159","display_name":"Hasan Kalyoncu University Institutional Repository (Hasan Kalyoncu University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210154391","host_organization_name":"Hasan Kalyoncu University","host_organization_lineage":["https://openalex.org/I4210154391"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.49000000953674316,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1983198643","https://openalex.org/W1987992874","https://openalex.org/W2056250732","https://openalex.org/W2068474065","https://openalex.org/W2084949910","https://openalex.org/W2106890176","https://openalex.org/W2115203739","https://openalex.org/W2124621808","https://openalex.org/W2156591001","https://openalex.org/W2162088497","https://openalex.org/W2164420317","https://openalex.org/W2340166670","https://openalex.org/W2924234733","https://openalex.org/W3094371180","https://openalex.org/W3159504416","https://openalex.org/W3161753189","https://openalex.org/W3165199846","https://openalex.org/W4309400074","https://openalex.org/W4384525165","https://openalex.org/W4386022877","https://openalex.org/W4388038779","https://openalex.org/W4392353221","https://openalex.org/W6861977850"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W4388282505","https://openalex.org/W3198631238","https://openalex.org/W4255657129"],"abstract_inverted_index":{"The":[0],"human":[1],"gut":[2,42],"microbiome":[3],"comprises":[4],"over":[5],"10":[6,155],"trillion":[7],"microbes":[8],"and":[9,28,40,99,119,135,173,204],"plays":[10],"important":[11],"roles":[12],"in":[13,33,53,107,162,184],"maintaining":[14],"metabolism,":[15],"body":[16],"homeostasis,":[17],"impacting":[18],"immune":[19],"function.":[20],"Metagenomics":[21],"which":[22,140],"studies":[23],"genomic":[24],"data":[25,86,118],"from":[26,102],"clinical":[27],"environmental":[29],"samples":[30,96],"is":[31,62],"crucial":[32],"understanding":[34],"the":[35,38,41,67,80,129,180,188,192],"interplay":[36],"between":[37],"host":[39],"microbiome.":[43],"Recently,":[44],"functional":[45],"profiling":[46,116],"of":[47,66,70,94,131],"metagenomes":[48],"helps":[49],"to":[50,78],"identify":[51],"alterations":[52],"microbial":[54],"functions,":[55],"particularly":[56],"enzyme-encoding":[57],"genes.":[58],"Colorectal":[59],"cancer":[60],"(CRC)":[61],"known":[63],"as":[64],"one":[65],"leading":[68],"causes":[69],"cancer-related":[71],"deaths.":[72],"In":[73],"this":[74,108,132,185],"study,":[75,186],"we":[76],"aimed":[77],"find":[79],"CRC-associated":[81,209],"enzymes":[82,199],"by":[83,114],"analyzing":[84],"metagenomic":[85],"with":[87,148],"different":[88,103,150],"machine":[89,137],"learning":[90,138],"methods.":[91,154],"A":[92],"total":[93],"1262":[95],"including":[97],"CRC":[98],"control":[100],"groups":[101],"countries":[104],"were":[105,146],"used":[106,161],"study.":[109],"This":[110],"dataset":[111],"was":[112,160,166],"obtained":[113],"functionally":[115],"metagenomics":[117],"estimating":[120],"community":[121],"level":[122],"enzyme":[123],"commission":[124],"(EC)":[125],"abundance":[126],"values.":[127],"For":[128],"analysis":[130],"dataset,":[133],"RCE-IFE":[134,197],"SVM-RCE":[136],"methods,":[139,145],"are":[141],"group-based":[142,193],"feature":[143,152,194],"selection":[144,153,195],"compared":[147],"6":[149],"individual":[151],"times":[156],"Monte-Carlo":[157],"Cross":[158],"Validation":[159],"our":[163],"experiments.":[164],"It":[165],"observed":[167],"that":[168],"RCE-IFE,":[169],"Extreme":[170],"Gradient":[171],"Boosting":[172],"Select":[174],"K":[175],"Best":[176],"methods":[177],"similarly":[178],"provided":[179],"best":[181],"performances.":[182],"Especially":[183],"besides":[187],"its":[189],"high":[190],"performance,":[191],"method":[196],"grouped":[198],"into":[200],"clusters":[201],"unlike":[202],"TFS,":[203],"then":[205],"identified":[206],"biologically":[207],"relevant":[208],"enzymes.":[210]},"counts_by_year":[],"updated_date":"2025-12-26T23:08:49.675405","created_date":"2025-10-10T00:00:00"}
