{"id":"https://openalex.org/W2089973091","doi":"https://doi.org/10.1109/siu.2013.6531383","title":"Impact of characteristics in viral integration hotspots on classification performance","display_name":"Impact of characteristics in viral integration hotspots on classification performance","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W2089973091","doi":"https://doi.org/10.1109/siu.2013.6531383","mag":"2089973091"},"language":"en","primary_location":{"id":"doi:10.1109/siu.2013.6531383","is_oa":false,"landing_page_url":"https://doi.org/10.1109/siu.2013.6531383","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 21st Signal Processing and Communications Applications Conference (SIU)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"E. Gumus","orcid":null},"institutions":[{"id":"https://openalex.org/I118036225","display_name":"Istanbul Bilgi University","ror":"https://ror.org/04pm4x478","country_code":"TR","type":"education","lineage":["https://openalex.org/I118036225"]},{"id":"https://openalex.org/I67581229","display_name":"Istanbul University","ror":"https://ror.org/03a5qrr21","country_code":"TR","type":"education","lineage":["https://openalex.org/I67581229"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"E. Gumus","raw_affiliation_strings":["Bilgisayar M\u00fchendisli\u011fi B\u00f6l\u00fcm\u00fc, \u0130stanbul \u00dcniversitesi, Istanbul, Turkey","Bilgisayar Muhendisligi Bolumu, Istanbul Univ., Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bilgisayar M\u00fchendisli\u011fi B\u00f6l\u00fcm\u00fc, \u0130stanbul \u00dcniversitesi, Istanbul, Turkey","institution_ids":["https://openalex.org/I118036225","https://openalex.org/I67581229"]},{"raw_affiliation_string":"Bilgisayar Muhendisligi Bolumu, Istanbul Univ., Istanbul, Turkey","institution_ids":["https://openalex.org/I67581229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075935061","display_name":"Olcay Kur\u015fun","orcid":"https://orcid.org/0000-0001-7153-2061"},"institutions":[{"id":"https://openalex.org/I118036225","display_name":"Istanbul Bilgi University","ror":"https://ror.org/04pm4x478","country_code":"TR","type":"education","lineage":["https://openalex.org/I118036225"]},{"id":"https://openalex.org/I67581229","display_name":"Istanbul University","ror":"https://ror.org/03a5qrr21","country_code":"TR","type":"education","lineage":["https://openalex.org/I67581229"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"O. Kursun","raw_affiliation_strings":["Bilgisayar M\u00fchendisli\u011fi B\u00f6l\u00fcm\u00fc, \u0130stanbul \u00dcniversitesi, Istanbul, Turkey","Bilgisayar Muhendisligi Bolumu, Istanbul Univ., Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bilgisayar M\u00fchendisli\u011fi B\u00f6l\u00fcm\u00fc, \u0130stanbul \u00dcniversitesi, Istanbul, Turkey","institution_ids":["https://openalex.org/I118036225","https://openalex.org/I67581229"]},{"raw_affiliation_string":"Bilgisayar Muhendisligi Bolumu, Istanbul Univ., Istanbul, Turkey","institution_ids":["https://openalex.org/I67581229"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065102655","display_name":"Ahmet Sertba\u015f","orcid":"https://orcid.org/0000-0001-8166-1211"},"institutions":[{"id":"https://openalex.org/I118036225","display_name":"Istanbul Bilgi University","ror":"https://ror.org/04pm4x478","country_code":"TR","type":"education","lineage":["https://openalex.org/I118036225"]},{"id":"https://openalex.org/I67581229","display_name":"Istanbul University","ror":"https://ror.org/03a5qrr21","country_code":"TR","type":"education","lineage":["https://openalex.org/I67581229"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"A. Sertbas","raw_affiliation_strings":["Bilgisayar M\u00fchendisli\u011fi B\u00f6l\u00fcm\u00fc, \u0130stanbul \u00dcniversitesi, Istanbul, Turkey","Bilgisayar Muhendisligi Bolumu, Istanbul Univ., Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bilgisayar M\u00fchendisli\u011fi B\u00f6l\u00fcm\u00fc, \u0130stanbul \u00dcniversitesi, Istanbul, Turkey","institution_ids":["https://openalex.org/I118036225","https://openalex.org/I67581229"]},{"raw_affiliation_string":"Bilgisayar Muhendisligi Bolumu, Istanbul Univ., Istanbul, Turkey","institution_ids":["https://openalex.org/I67581229"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0989333,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"28","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6831693649291992},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5524406433105469},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5307707190513611},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.49966883659362793},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4783765375614166},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4617386758327484},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.44317230582237244},{"id":"https://openalex.org/keywords/canonical-correlation","display_name":"Canonical correlation","score":0.42006051540374756},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.405435174703598},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4017515480518341},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3943064212799072},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35481327772140503},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2790296971797943},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.14746248722076416}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6831693649291992},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5524406433105469},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5307707190513611},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.49966883659362793},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4783765375614166},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4617386758327484},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.44317230582237244},{"id":"https://openalex.org/C153874254","wikidata":"https://www.wikidata.org/wiki/Q115542","display_name":"Canonical correlation","level":2,"score":0.42006051540374756},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.405435174703598},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4017515480518341},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3943064212799072},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35481327772140503},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2790296971797943},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.14746248722076416},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/siu.2013.6531383","is_oa":false,"landing_page_url":"https://doi.org/10.1109/siu.2013.6531383","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 21st Signal Processing and Communications Applications Conference (SIU)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"},{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1505600378","https://openalex.org/W1967827763","https://openalex.org/W2006765654","https://openalex.org/W2026422480","https://openalex.org/W2042608483","https://openalex.org/W2095745100","https://openalex.org/W2098762621","https://openalex.org/W2100235303","https://openalex.org/W2148603752","https://openalex.org/W6630026781"],"related_works":["https://openalex.org/W2367413540","https://openalex.org/W1968846550","https://openalex.org/W4387164999","https://openalex.org/W2070623039","https://openalex.org/W1991315556","https://openalex.org/W2006749424","https://openalex.org/W2155515508","https://openalex.org/W3131670725","https://openalex.org/W2354853260","https://openalex.org/W1970646221"],"abstract_inverted_index":{"Main":[0],"reason":[1],"of":[2,50,60,78,107],"genetic":[3,35],"defects":[4],"is":[5,68,82,88],"the":[6,16,26,56,75,85,105],"disorders":[7,29],"in":[8,48],"gene":[9,24],"regions":[10,27,43],"which":[11,53],"are":[12,54],"responsible":[13],"for":[14,19,40],"coding":[15],"proteins":[17],"necessary":[18],"normal":[20],"body":[21],"functions.":[22],"By":[23,84],"therapy,":[25],"with":[28],"can":[30,37],"be":[31,38],"detected":[32],"and":[33,70],"their":[34,111],"content":[36],"changed":[39],"good.":[41],"These":[42],"may":[44],"have":[45],"special":[46],"characteristics":[47],"terms":[49],"nucleotide":[51],"dispersion":[52],"beyond":[55],"known":[57,98],"statistical":[58],"norms":[59],"genome.":[61],"In":[62],"this":[63],"study,":[64],"such":[65],"a":[66],"characteristic":[67],"defined":[69],"its":[71],"effect":[72],"on":[73],"predicting":[74],"strand":[76,112],"direction":[77],"genomic":[79],"reads":[80,108],"(classification)":[81],"analyzed.":[83],"analyses,":[86],"it":[87],"observed":[89],"that":[90],"Canonical":[91],"Correlation":[92],"Analysis":[93],"(CCA)":[94],"method":[95],"outperforms":[96],"well":[97],"Support":[99],"Vector":[100],"Machines":[101],"(SVM)":[102],"approach":[103],"considering":[104],"discrimination":[106],"according":[109],"to":[110],"directions.":[113]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
