{"id":"https://openalex.org/W2018425552","doi":"https://doi.org/10.1109/siu.2013.6531349","title":"Distinguishing the type of NOE for NMR protein Structure-Based Assignments","display_name":"Distinguishing the type of NOE for NMR protein Structure-Based Assignments","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W2018425552","doi":"https://doi.org/10.1109/siu.2013.6531349","mag":"2018425552"},"language":"en","primary_location":{"id":"doi:10.1109/siu.2013.6531349","is_oa":false,"landing_page_url":"https://doi.org/10.1109/siu.2013.6531349","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 21st Signal Processing and Communications Applications Conference (SIU)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102975491","display_name":"Murodzhon Akhmedov","orcid":"https://orcid.org/0000-0002-2498-3780"},"institutions":[{"id":"https://openalex.org/I134235054","display_name":"Sabanc\u0131 \u00dcniversitesi","ror":"https://ror.org/049asqa32","country_code":"TR","type":"education","lineage":["https://openalex.org/I134235054"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"M. Akhmedov","raw_affiliation_strings":["Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla, Istanbul, TURKEY","Fac. of Eng. & Natural Sci., Sabanci Univ, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla, Istanbul, TURKEY","institution_ids":["https://openalex.org/I134235054"]},{"raw_affiliation_string":"Fac. of Eng. & Natural Sci., Sabanci Univ, Istanbul, Turkey","institution_ids":["https://openalex.org/I134235054"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022556437","display_name":"Mehmet Serkan Apayd\u0131n","orcid":"https://orcid.org/0000-0002-4707-8994"},"institutions":[{"id":"https://openalex.org/I13419840","display_name":"Istanbul \u015eehir University","ror":"https://ror.org/020ddy191","country_code":"TR","type":"education","lineage":["https://openalex.org/I13419840"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"M. S. Apaydin","raw_affiliation_strings":["Electr. & Electron. Eng., Istanbul Sehir Univ., Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electr. & Electron. Eng., Istanbul Sehir Univ., Istanbul, Turkey","institution_ids":["https://openalex.org/I13419840"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030544686","display_name":"B\u00fclent \u00c7atay","orcid":"https://orcid.org/0000-0001-5950-3321"},"institutions":[{"id":"https://openalex.org/I134235054","display_name":"Sabanc\u0131 \u00dcniversitesi","ror":"https://ror.org/049asqa32","country_code":"TR","type":"education","lineage":["https://openalex.org/I134235054"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Bulent Catay","raw_affiliation_strings":["Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla, Istanbul, TURKEY","Fac. of Eng. & Natural Sci., Sabanci Univ, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla, Istanbul, TURKEY","institution_ids":["https://openalex.org/I134235054"]},{"raw_affiliation_string":"Fac. of Eng. & Natural Sci., Sabanci Univ, Istanbul, Turkey","institution_ids":["https://openalex.org/I134235054"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tabu-search","display_name":"Tabu search","score":0.6469432711601257},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5542188286781311},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.4965365529060364},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.49405959248542786},{"id":"https://openalex.org/keywords/nuclear-overhauser-effect","display_name":"Nuclear Overhauser effect","score":0.43977391719818115},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40204107761383057},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.354162335395813},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3532739281654358},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.34863409399986267},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.33699172735214233},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance-spectroscopy","display_name":"Nuclear magnetic resonance spectroscopy","score":0.2818443775177002},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.2582757771015167}],"concepts":[{"id":"https://openalex.org/C123370116","wikidata":"https://www.wikidata.org/wiki/Q1424540","display_name":"Tabu search","level":2,"score":0.6469432711601257},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5542188286781311},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.4965365529060364},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.49405959248542786},{"id":"https://openalex.org/C119851462","wikidata":"https://www.wikidata.org/wiki/Q901095","display_name":"Nuclear Overhauser effect","level":3,"score":0.43977391719818115},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40204107761383057},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.354162335395813},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3532739281654358},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.34863409399986267},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.33699172735214233},{"id":"https://openalex.org/C66974803","wikidata":"https://www.wikidata.org/wiki/Q10359898","display_name":"Nuclear magnetic resonance spectroscopy","level":2,"score":0.2818443775177002},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.2582757771015167},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/siu.2013.6531349","is_oa":false,"landing_page_url":"https://doi.org/10.1109/siu.2013.6531349","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 21st Signal Processing and Communications Applications Conference (SIU)","raw_type":"proceedings-article"},{"id":"pmh:oai:research.sabanciuniv.edu:21613","is_oa":false,"landing_page_url":"https://research.sabanciuniv.edu/id/eprint/21613/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402254","display_name":"Sabanci University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134235054","host_organization_name":"Sabanc\u0131 \u00dcniversitesi","host_organization_lineage":["https://openalex.org/I134235054"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:earsiv.sehir.edu.tr:11498/30028","is_oa":false,"landing_page_url":"http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6531349&tag=1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401684","display_name":"Istanbul \u015eehir University Institutional Repository (Istanbul \u015eehir University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13419840","host_organization_name":"Istanbul \u015eehir University","host_organization_lineage":["https://openalex.org/I13419840"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1970208847","https://openalex.org/W1979749103","https://openalex.org/W1985335558","https://openalex.org/W2038963639","https://openalex.org/W2051834970","https://openalex.org/W2116376617","https://openalex.org/W2135307619","https://openalex.org/W2142026881","https://openalex.org/W2154821473"],"related_works":["https://openalex.org/W1657880117","https://openalex.org/W2595172197","https://openalex.org/W2127970246","https://openalex.org/W2084856301","https://openalex.org/W1001352512","https://openalex.org/W4382618745","https://openalex.org/W2885125400","https://openalex.org/W1989889224","https://openalex.org/W1987128138","https://openalex.org/W2748922771"],"abstract_inverted_index":{"The":[0],"key":[1],"bottleneck":[2],"of":[3,90,113,169],"Nuclear":[4,52,101],"Magnetic":[5],"Resonance":[6],"(NMR)":[7],"studies":[8],"is":[9,28,67,99,106],"to":[10,15,31,57,80,137,185],"map":[11],"the":[12,21,42,51,82,91,100,123,139,142,159,166,174,180,195,199],"NMR":[13],"peaks":[14],"corresponding":[16,160],"nuclei,":[17],"also":[18,178],"known":[19],"as":[20,60],"assignment":[22,200],"problem.":[23,65],"Structure":[24],"Based":[25],"Assignment":[26],"(SBA)":[27],"an":[29,107],"approach":[30,73,197],"solve":[32],"this":[33,145,149],"computationally":[34],"challenging":[35],"problem":[36,150,167],"by":[37,96],"using":[38],"prior":[39],"information":[40],"about":[41],"protein":[43],"obtained":[44],"from":[45],"a":[46,61,68,76],"homologous":[47],"structure.":[48],"NVR-BIP":[49,170],"uses":[50],"Vector":[53],"Replacement":[54],"(NVR)":[55],"framework":[56],"model":[58],"SBA":[59],"binary":[62],"integer":[63],"programming":[64],"NVR-TS":[66],"tabu":[69,181],"search":[70,182],"(TS)":[71],"based":[72],"equipped":[74],"with":[75,84],"guided":[77],"perturbation":[78],"mechanism":[79],"handle":[81],"proteins":[83],"larger":[85],"amino":[86],"acid":[87],"numbers.":[88],"One":[89],"principal":[92],"data":[93],"sources":[94],"used":[95,136],"these":[97,120],"programs":[98],"Overhauser":[102],"effect":[103,108],"(NOE).":[104],"NOE":[105],"measured":[109],"between":[110],"any":[111],"pair":[112],"protons":[114],"closer":[115],"than":[116],"6":[117],"\u0226.":[118],"In":[119,144],"previous":[121],"approaches":[122],"proton":[124],"type":[125],"was":[126],"not":[127],"distinguished":[128],"in":[129,162],"NOEs":[130,140],"and":[131,151,155,158,172,188],"only":[132],"HN":[133,156,189],"coordinates":[134,157],"were":[135],"incorporate":[138],"into":[141],"computation.":[143,163],"study,":[146],"we":[147],"fix":[148],"use":[152],"both":[153],"HA":[154,187],"distances":[161],"We":[164,177],"update":[165],"formulation":[168],"accordingly":[171],"formulate":[173],"modified":[175],"NVR-BIP.":[176],"adapt":[179],"algorithm":[183],"(NVR-TS)":[184],"utilize":[186],"coordinates.":[190],"Our":[191],"results":[192],"indicate":[193],"that":[194],"new":[196],"improves":[198],"accuracies":[201],"significantly.":[202]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
