{"id":"https://openalex.org/W2897143211","doi":"https://doi.org/10.1109/sera.2018.8477200","title":"A General Framework and Maturity Model for Bioinformatics Pipeline Development","display_name":"A General Framework and Maturity Model for Bioinformatics Pipeline Development","publication_year":2018,"publication_date":"2018-06-01","ids":{"openalex":"https://openalex.org/W2897143211","doi":"https://doi.org/10.1109/sera.2018.8477200","mag":"2897143211"},"language":"en","primary_location":{"id":"doi:10.1109/sera.2018.8477200","is_oa":false,"landing_page_url":"https://doi.org/10.1109/sera.2018.8477200","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 16th International Conference on Software Engineering Research, Management and Applications (SERA)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078483628","display_name":"Ethan W. Chen","orcid":"https://orcid.org/0000-0001-6818-9725"},"institutions":[{"id":"https://openalex.org/I142934699","display_name":"California State University, Fullerton","ror":"https://ror.org/02avqqw26","country_code":"US","type":"education","lineage":["https://openalex.org/I142934699"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ethan W. Chen","raw_affiliation_strings":["Department of Computer Science, California State University-Fullerton, Fullerton, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, California State University-Fullerton, Fullerton, USA","institution_ids":["https://openalex.org/I142934699"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5078483628"],"corresponding_institution_ids":["https://openalex.org/I142934699"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15232866,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"9","issue":null,"first_page":"136","last_page":"142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.8113734722137451},{"id":"https://openalex.org/keywords/maintainability","display_name":"Maintainability","score":0.7337733507156372},{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.7305946350097656},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6458950042724609},{"id":"https://openalex.org/keywords/reusability","display_name":"Reusability","score":0.6295695304870605},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5682445764541626},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.45251843333244324},{"id":"https://openalex.org/keywords/maturity","display_name":"Maturity (psychological)","score":0.4370511472225189},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4143625497817993},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3302927017211914},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.2643499970436096},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09240919351577759},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.07596480846405029}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.8113734722137451},{"id":"https://openalex.org/C160713754","wikidata":"https://www.wikidata.org/wiki/Q1389965","display_name":"Maintainability","level":2,"score":0.7337733507156372},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.7305946350097656},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6458950042724609},{"id":"https://openalex.org/C137981799","wikidata":"https://www.wikidata.org/wiki/Q1369184","display_name":"Reusability","level":3,"score":0.6295695304870605},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5682445764541626},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.45251843333244324},{"id":"https://openalex.org/C101433766","wikidata":"https://www.wikidata.org/wiki/Q3543263","display_name":"Maturity (psychological)","level":2,"score":0.4370511472225189},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4143625497817993},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3302927017211914},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.2643499970436096},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09240919351577759},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.07596480846405029},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C138496976","wikidata":"https://www.wikidata.org/wiki/Q175002","display_name":"Developmental psychology","level":1,"score":0.0},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/sera.2018.8477200","is_oa":false,"landing_page_url":"https://doi.org/10.1109/sera.2018.8477200","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 16th International Conference on Software Engineering Research, Management and Applications (SERA)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W637592000","https://openalex.org/W1812401750","https://openalex.org/W1988431525","https://openalex.org/W2006302594","https://openalex.org/W2070588509","https://openalex.org/W2081561944","https://openalex.org/W2095516166","https://openalex.org/W2098466396","https://openalex.org/W2110417468","https://openalex.org/W2122363242","https://openalex.org/W2125003087","https://openalex.org/W2157302781","https://openalex.org/W2167279371","https://openalex.org/W2168103533","https://openalex.org/W2169912638","https://openalex.org/W2304155384","https://openalex.org/W2915095518","https://openalex.org/W4246136756"],"related_works":["https://openalex.org/W2580033583","https://openalex.org/W2101422923","https://openalex.org/W2112885082","https://openalex.org/W2392451010","https://openalex.org/W4380433113","https://openalex.org/W4386072068","https://openalex.org/W252339960","https://openalex.org/W2390529043","https://openalex.org/W2378320433","https://openalex.org/W2358343511"],"abstract_inverted_index":{"Bioinformatics":[0],"pipelines":[1,42,80],"are":[2,81],"often":[3],"constructed":[4],"in":[5,15,92,97],"chaotic,":[6],"ad":[7,11],"hoc":[8,12],"environments.":[9],"This":[10],"construction":[13],"results":[14],"problems":[16],"with":[17],"quality":[18],"control,":[19],"pipeline":[20,32,61,77,93],"maintainability,":[21],"and":[22,43,49,64],"code":[23],"reusability.":[24],"The":[25,56],"application":[26],"of":[27,41,47,58,72,89],"process":[28,75],"control":[29],"to":[30,84,101],"bioinformatics":[31,60],"creation":[33,94],"can":[34,95],"address":[35],"these":[36],"issues,":[37],"increasing":[38],"the":[39,45,70,87],"lifespan":[40],"decreasing":[44],"amount":[46],"time":[48],"energy":[50],"spent":[51],"on":[52],"recreating":[53],"defunct":[54],"pipelines.":[55],"description":[57],"a":[59,73],"development":[62],"lifecycle":[63],"maturity":[65],"model":[66],"presented":[67],"here":[68],"lays":[69],"groundwork":[71],"defined":[74],"for":[76],"development.":[78],"As":[79],"tools":[82],"used":[83,91],"conduct":[85],"research,":[86],"decrease":[88],"resources":[90,99],"result":[96],"more":[98],"dedicated":[100],"research":[102],"productivity.":[103]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
