{"id":"https://openalex.org/W2080141293","doi":"https://doi.org/10.1109/scis-isis.2012.6505355","title":"A trim distance between positions as packaging signals in H3N2 influenza viruses","display_name":"A trim distance between positions as packaging signals in H3N2 influenza viruses","publication_year":2012,"publication_date":"2012-11-01","ids":{"openalex":"https://openalex.org/W2080141293","doi":"https://doi.org/10.1109/scis-isis.2012.6505355","mag":"2080141293"},"language":"en","primary_location":{"id":"doi:10.1109/scis-isis.2012.6505355","is_oa":false,"landing_page_url":"https://doi.org/10.1109/scis-isis.2012.6505355","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 6th International Conference on Soft Computing and Intelligent Systems, and The 13th International Symposium on Advanced Intelligence Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004146349","display_name":"Shunsuke Makino","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Shunsuke Makino","raw_affiliation_strings":["Graduate School of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Japan","Graduate School of Computer Science, and Systems Engineering, Kyushu Institute of Technology, Kawazu 680-4, Iizuka 820-8502, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Japan","institution_ids":["https://openalex.org/I207014233"]},{"raw_affiliation_string":"Graduate School of Computer Science, and Systems Engineering, Kyushu Institute of Technology, Kawazu 680-4, Iizuka 820-8502, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021123551","display_name":"Takaharu Shimada","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takaharu Shimada","raw_affiliation_strings":["Graduate School of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Japan","Graduate School of Computer Science, and Systems Engineering, Kyushu Institute of Technology, Kawazu 680-4, Iizuka 820-8502, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, Japan","institution_ids":["https://openalex.org/I207014233"]},{"raw_affiliation_string":"Graduate School of Computer Science, and Systems Engineering, Kyushu Institute of Technology, Kawazu 680-4, Iizuka 820-8502, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028174899","display_name":"Kouichi Hirata","orcid":"https://orcid.org/0000-0003-0814-8395"},"institutions":[{"id":"https://openalex.org/I194335595","display_name":"Nagahama Institute of Bio-Science and Technology","ror":"https://ror.org/03m5fme96","country_code":"JP","type":"education","lineage":["https://openalex.org/I194335595"]},{"id":"https://openalex.org/I4210143983","display_name":"Kyushu Art Institute of Technology","ror":"https://ror.org/03t4t2e74","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210143983"]},{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kouichi Hirata","raw_affiliation_strings":["Department of Artificial Intelligence & Biomedical Informatics R&D Center, Kyushu Institute of Technology, Iizuka, Japan","Nagahama Institute of Bio-Science and Technology, Nagahama, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence & Biomedical Informatics R&D Center, Kyushu Institute of Technology, Iizuka, Japan","institution_ids":["https://openalex.org/I4210143983","https://openalex.org/I207014233"]},{"raw_affiliation_string":"Nagahama Institute of Bio-Science and Technology, Nagahama, Japan","institution_ids":["https://openalex.org/I194335595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109243394","display_name":"Kouki Yonezawa","orcid":null},"institutions":[{"id":"https://openalex.org/I194335595","display_name":"Nagahama Institute of Bio-Science and Technology","ror":"https://ror.org/03m5fme96","country_code":"JP","type":"education","lineage":["https://openalex.org/I194335595"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kouki Yonezawa","raw_affiliation_strings":["Department of Computer Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Japan","Nagahama Institute of Bio-Science and Technology, Nagahama, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Japan","institution_ids":["https://openalex.org/I194335595"]},{"raw_affiliation_string":"Nagahama Institute of Bio-Science and Technology, Nagahama, Japan","institution_ids":["https://openalex.org/I194335595"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024017884","display_name":"Kimihito Ito","orcid":"https://orcid.org/0000-0003-4986-1795"},"institutions":[{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kimihito Ito","raw_affiliation_strings":["Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan","Research Center for Zoonosis Control, Hokkaido University, North 20 West 10, Kita-ku, Sapporo 001-0020, Japan"],"affiliations":[{"raw_affiliation_string":"Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan","institution_ids":["https://openalex.org/I205349734"]},{"raw_affiliation_string":"Research Center for Zoonosis Control, Hokkaido University, North 20 West 10, Kita-ku, Sapporo 001-0020, Japan","institution_ids":["https://openalex.org/I205349734"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004146349"],"corresponding_institution_ids":["https://openalex.org/I207014233"],"apc_list":null,"apc_paid":null,"fwci":0.2012,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.59626234,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"79","issue":null,"first_page":"1702","last_page":"1707"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trim","display_name":"Trim","score":0.8391845226287842},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7227911949157715},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.533024787902832},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.4293438494205475},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.42433255910873413},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3885228633880615},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3845963478088379},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.349500447511673},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34608879685401917},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3110065460205078},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2527671456336975},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.24363699555397034},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12329158186912537}],"concepts":[{"id":"https://openalex.org/C88611116","wikidata":"https://www.wikidata.org/wiki/Q957004","display_name":"Trim","level":2,"score":0.8391845226287842},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7227911949157715},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.533024787902832},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.4293438494205475},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.42433255910873413},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3885228633880615},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3845963478088379},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.349500447511673},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34608879685401917},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3110065460205078},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2527671456336975},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.24363699555397034},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12329158186912537},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/scis-isis.2012.6505355","is_oa":false,"landing_page_url":"https://doi.org/10.1109/scis-isis.2012.6505355","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 6th International Conference on Soft Computing and Intelligent Systems, and The 13th International Symposium on Advanced Intelligence Systems","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W25240994","https://openalex.org/W1970497184","https://openalex.org/W1974372768","https://openalex.org/W1988533731","https://openalex.org/W2048913769","https://openalex.org/W2105042928","https://openalex.org/W2106073687","https://openalex.org/W2123271650","https://openalex.org/W2129179244","https://openalex.org/W2135519282","https://openalex.org/W2139359573","https://openalex.org/W2160488806","https://openalex.org/W2580626159","https://openalex.org/W4238878192"],"related_works":["https://openalex.org/W2174809885","https://openalex.org/W2949296710","https://openalex.org/W2057191541","https://openalex.org/W2883025420","https://openalex.org/W1992658754","https://openalex.org/W2111939425","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2375383082","https://openalex.org/W1974895455"],"abstract_inverted_index":{"A":[0,44,62],"trim":[1,52],"distance":[2,6,18],"as":[3,15,36],"a":[4],"phylogeny-based":[5],"between":[7,19,54],"two":[8],"positions":[9,35,55],"in":[10,30,42,56],"nucleotide":[11,40,58],"sequences":[12,41,59],"is":[13],"formulated":[14],"an":[16],"LCA-preserving":[17],"the":[20,25,34,51,57],"trimmed":[21],"phylogenetic":[22],"trees":[23],"by":[24],"positions.":[26],"In":[27],"this":[28],"paper,":[29],"order":[31],"to":[32],"investigate":[33],"packaging":[37],"signals":[38],"of":[39,60],"influenza":[43,61],"(H3N2)":[45,63],"viruses,":[46],"we":[47],"compute":[48],"and":[49],"compare":[50],"distances":[53],"viruses":[64],"provided":[65],"from":[66],"NCBI.":[67]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
