{"id":"https://openalex.org/W2799155156","doi":"https://doi.org/10.1109/samos.2017.8344621","title":"Towards real-time whisker tracking in rodents for studying sensorimotor disorders","display_name":"Towards real-time whisker tracking in rodents for studying sensorimotor disorders","publication_year":2017,"publication_date":"2017-07-01","ids":{"openalex":"https://openalex.org/W2799155156","doi":"https://doi.org/10.1109/samos.2017.8344621","mag":"2799155156"},"language":"en","primary_location":{"id":"doi:10.1109/samos.2017.8344621","is_oa":false,"landing_page_url":"https://doi.org/10.1109/samos.2017.8344621","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation (SAMOS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008951790","display_name":"Yang Ma","orcid":"https://orcid.org/0000-0001-7491-1438"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]},{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Yang Ma","raw_affiliation_strings":["Computer Engineering Laboratory, Delft University of Technology, The Netherlands","Department of Neuroscience, Erasmus, MC, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Computer Engineering Laboratory, Delft University of Technology, The Netherlands","institution_ids":["https://openalex.org/I98358874"]},{"raw_affiliation_string":"Department of Neuroscience, Erasmus, MC, The Netherlands","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064982010","display_name":"Prajith Ramakrishnan Geethakumari","orcid":"https://orcid.org/0000-0002-3242-1876"},"institutions":[{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Prajith Ramakrishnan Geethakumari","raw_affiliation_strings":["Chalmers tekniska hogskola, Goteborg, SE"],"affiliations":[{"raw_affiliation_string":"Chalmers tekniska hogskola, Goteborg, SE","institution_ids":["https://openalex.org/I66862912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030588527","display_name":"Georgios Smaragdos","orcid":"https://orcid.org/0000-0001-7969-9827"},"institutions":[{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Georgios Smaragdos","raw_affiliation_strings":["Department of Neuroscience, Erasmus, MC, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Erasmus, MC, The Netherlands","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019497381","display_name":"Sander Lindeman","orcid":"https://orcid.org/0000-0002-2965-744X"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sander Lindeman","raw_affiliation_strings":["Department of Neuroscience, Erasmus, MC, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Erasmus, MC, The Netherlands","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020264649","display_name":"Vincenzo Romano","orcid":"https://orcid.org/0000-0002-4449-6541"},"institutions":[{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Vincenzo Romano","raw_affiliation_strings":["Department of Neuroscience, Erasmus, MC, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Erasmus, MC, The Netherlands","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013466236","display_name":"Mario Negrello","orcid":"https://orcid.org/0000-0002-8527-4259"},"institutions":[{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Mario Negrello","raw_affiliation_strings":["Department of Neuroscience, Erasmus, MC, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Erasmus, MC, The Netherlands","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087174287","display_name":"Ioannis Sourdis","orcid":"https://orcid.org/0000-0002-0452-3664"},"institutions":[{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ioannis Sourdis","raw_affiliation_strings":["Computer Science Engineering Department, Chalmers University of Technology, Sweden"],"affiliations":[{"raw_affiliation_string":"Computer Science Engineering Department, Chalmers University of Technology, Sweden","institution_ids":["https://openalex.org/I66862912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057659403","display_name":"Laurens W. J. Bosman","orcid":"https://orcid.org/0000-0001-9497-0566"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Laurens W.J. Bosman","raw_affiliation_strings":["Department of Neuroscience, Erasmus, MC, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Erasmus, MC, The Netherlands","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033643407","display_name":"Chris I. De Zeeuw","orcid":"https://orcid.org/0000-0001-5628-8187"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Chris I. De Zeeuw","raw_affiliation_strings":["Erasmus MC, Rotterdam, Zuid-Holland, NL"],"affiliations":[{"raw_affiliation_string":"Erasmus MC, Rotterdam, Zuid-Holland, NL","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021955713","display_name":"Zaid Al-Ars","orcid":"https://orcid.org/0000-0001-7670-8572"},"institutions":[{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Zaid Al-Ars","raw_affiliation_strings":["Computer Engineering Laboratory, Delft University of Technology, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Computer Engineering Laboratory, Delft University of Technology, The Netherlands","institution_ids":["https://openalex.org/I98358874"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077785373","display_name":"Christos Strydis","orcid":"https://orcid.org/0000-0002-0935-9322"},"institutions":[{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Christos Strydis","raw_affiliation_strings":["Department of Neuroscience, Erasmus, MC, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Erasmus, MC, The Netherlands","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5008951790"],"corresponding_institution_ids":["https://openalex.org/I2801952686","https://openalex.org/I913958620","https://openalex.org/I98358874"],"apc_list":null,"apc_paid":null,"fwci":0.2647,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.51429775,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"137","last_page":"145"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8322283029556274},{"id":"https://openalex.org/keywords/frame-rate","display_name":"Frame rate","score":0.587049126625061},{"id":"https://openalex.org/keywords/latency","display_name":"Latency (audio)","score":0.5546228885650635},{"id":"https://openalex.org/keywords/multithreading","display_name":"Multithreading","score":0.5188787579536438},{"id":"https://openalex.org/keywords/thread","display_name":"Thread (computing)","score":0.47223541140556335},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.4602465033531189},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.3480827212333679},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.34068095684051514},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2686709463596344},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13901904225349426}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8322283029556274},{"id":"https://openalex.org/C3261483","wikidata":"https://www.wikidata.org/wiki/Q119565","display_name":"Frame rate","level":2,"score":0.587049126625061},{"id":"https://openalex.org/C82876162","wikidata":"https://www.wikidata.org/wiki/Q17096504","display_name":"Latency (audio)","level":2,"score":0.5546228885650635},{"id":"https://openalex.org/C201410400","wikidata":"https://www.wikidata.org/wiki/Q1064412","display_name":"Multithreading","level":3,"score":0.5188787579536438},{"id":"https://openalex.org/C138101251","wikidata":"https://www.wikidata.org/wiki/Q213092","display_name":"Thread (computing)","level":2,"score":0.47223541140556335},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.4602465033531189},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.3480827212333679},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.34068095684051514},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2686709463596344},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13901904225349426},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/samos.2017.8344621","is_oa":false,"landing_page_url":"https://doi.org/10.1109/samos.2017.8344621","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation (SAMOS)","raw_type":"proceedings-article"},{"id":"pmh:eur:oai:pure.eur.nl:publications/8b9f0f84-ca40-42f1-bb8a-5fa60162ed74","is_oa":false,"landing_page_url":"https://pure.eur.nl/en/publications/8b9f0f84-ca40-42f1-bb8a-5fa60162ed74","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings - 2017 17th International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation, SAMOS 2017, 137 - 145","raw_type":"info:eu-repo/semantics/conferencepaper"},{"id":"pmh:oai:research.chalmers.se:507498","is_oa":false,"landing_page_url":"https://research.chalmers.se/en/publication/507498","pdf_url":null,"source":{"id":"https://openalex.org/S4306402469","display_name":"Chalmers Research (Chalmers University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66862912","host_organization_name":"Chalmers University of Technology","host_organization_lineage":["https://openalex.org/I66862912"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320335551","display_name":"Erasmus+","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1971677256","https://openalex.org/W1990606357","https://openalex.org/W2018796939","https://openalex.org/W2023497162","https://openalex.org/W2060706233","https://openalex.org/W2069736192","https://openalex.org/W2095360787","https://openalex.org/W2106596027","https://openalex.org/W2109062476","https://openalex.org/W2113576281","https://openalex.org/W2161516666","https://openalex.org/W2164022670","https://openalex.org/W2168479270","https://openalex.org/W2538414056"],"related_works":["https://openalex.org/W3089117407","https://openalex.org/W2115561485","https://openalex.org/W2023373638","https://openalex.org/W1985089255","https://openalex.org/W2010970156","https://openalex.org/W2105895556","https://openalex.org/W2153202644","https://openalex.org/W4235861380","https://openalex.org/W2377593213","https://openalex.org/W2733115356"],"abstract_inverted_index":{"The":[0,43],"rodent":[1,68],"whisker":[2,92,201],"system":[3,202],"is":[4,31,130,164],"a":[5,19,49,73,165,180,212],"prominent":[6],"experimental":[7,117],"subject":[8],"for":[9,64,90,124],"the":[10,33,38,121,132,149,177,200,218,225],"study":[11],"of":[12,21,35,128,160,214,221],"sensorimotor":[13,69],"integration":[14],"and":[15,25,45,57,66,86,104,112,217],"active":[16],"sensing.":[17],"As":[18],"result":[20],"improved":[22],"video-recording":[23],"technology":[24],"progressively":[26],"better":[27],"neurophysiological":[28],"methods,":[29],"there":[30],"now":[32],"prospect":[34],"precisely":[36],"analyzing":[37],"intact":[39],"vibrissal":[40],"sensori-motor":[41],"system.":[42],"vibrissae":[44],"snout":[46],"analyzer":[47],"(ViSA),":[48],"widely":[50],"used":[51],"algorithm":[52,85,178],"based":[53],"on":[54,179],"computer":[55],"vision":[56],"image":[58],"processing,":[59],"has":[60],"been":[61],"proven":[62],"successful":[63],"tracking":[65,93],"quantifying":[67],"behavior,":[70],"but":[71],"at":[72],"great":[74],"cost":[75],"in":[76,155],"processing":[77,158],"time.":[78],"In":[79,206],"order":[80],"to":[81,148,187],"accelerate":[82],"this":[83,185],"offline":[84,126],"eventually":[87],"employ":[88],"it":[89],"online":[91],"(less":[94],"than":[95,144],"1":[96],"ms/frame":[97],"latency),":[98],"we":[99,141],"have":[100],"explored":[101],"various":[102],"optimizations":[103,216],"acceleration":[105],"platforms,":[106],"including":[107],"OpenMP":[108],"multithreading,":[109],"NVidia":[110],"GPUs":[111],"Maxeler":[113],"Dataflow":[114],"Engines.":[115],"Our":[116],"results":[118],"indicate":[119],"that":[120,175,211],"optimal":[122],"solution":[123],"an":[125,156],"implementation":[127],"ViSA":[129],"currently":[131],"OpenMP-based":[133],"CPU":[134,139],"execution.":[135],"By":[136],"using":[137],"16":[138],"threads,":[140],"achieve":[142],"more":[143],"4,500x":[145],"speedup":[146],"compared":[147],"original":[150],"Matlab":[151],"serial":[152],"version,":[153],"resulting":[154],"average":[157],"latency":[159],"1.2":[161],"ms/frame,":[162,189],"which":[163],"solid":[166],"step":[167],"towards":[168],"real-time":[169,192],"(and":[170],"online)":[171],"tracking.":[172],"Analysis":[173],"shows":[174,210],"running":[176],"32-thread-enabled":[181],"machine":[182],"can":[183],"reduce":[184],"number":[186],"0.72":[188],"thereby":[190],"enabling":[191],"performance.":[193],"This":[194],"will":[195],"allow":[196],"direct":[197],"interaction":[198],"with":[199],"during":[203],"behavioral":[204],"experiments.":[205],"conclusion,":[207],"our":[208],"approach":[209],"combination":[213],"software":[215],"careful":[219],"selection":[220],"hardware":[222],"platform":[223],"yields":[224],"best":[226],"performance":[227],"increase.":[228]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
