{"id":"https://openalex.org/W2143247338","doi":"https://doi.org/10.1109/saintw.2004.1268699","title":"Programming environment based on distributed shared arrays for high-performance scientific computing","display_name":"Programming environment based on distributed shared arrays for high-performance scientific computing","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W2143247338","doi":"https://doi.org/10.1109/saintw.2004.1268699","mag":"2143247338"},"language":"en","primary_location":{"id":"doi:10.1109/saintw.2004.1268699","is_oa":false,"landing_page_url":"https://doi.org/10.1109/saintw.2004.1268699","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2004 International Symposium on Applications and the Internet Workshops. 2004 Workshops.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103097136","display_name":"Akihiro Nomoto","orcid":"https://orcid.org/0000-0003-1353-096X"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"A. Nomoto","raw_affiliation_strings":["Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","Dept. of Biotechnol., Tokyo Univ., Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Dept. of Biotechnol., Tokyo Univ., Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081724827","display_name":"Wataru Kaneko","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"W. Kaneko","raw_affiliation_strings":["Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","Dept. of Biotechnol., Tokyo Univ., Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Dept. of Biotechnol., Tokyo Univ., Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034027775","display_name":"Tomoki P. Terada","orcid":"https://orcid.org/0000-0001-8231-9274"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Terada","raw_affiliation_strings":["Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","Dept. of Biotechnol., Tokyo Univ., Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Dept. of Biotechnol., Tokyo Univ., Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059004826","display_name":"Shugo Nakamura","orcid":"https://orcid.org/0000-0003-0851-7437"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"S. Nakamura","raw_affiliation_strings":["Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","Dept. of Biotechnol., Tokyo Univ., Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Dept. of Biotechnol., Tokyo Univ., Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102746753","display_name":"Kentaro Shimizu","orcid":"https://orcid.org/0000-0002-3245-0052"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Shimizu","raw_affiliation_strings":["Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","Dept. of Biotechnol., Tokyo Univ., Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, University of Tokyo, Bunkyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Dept. of Biotechnol., Tokyo Univ., Japan","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5103097136"],"corresponding_institution_ids":["https://openalex.org/I74801974"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.20799906,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"e83 d","issue":null,"first_page":"630","last_page":"636"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7916370630264282},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6983844637870789},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.650301992893219},{"id":"https://openalex.org/keywords/synchronization","display_name":"Synchronization (alternating current)","score":0.6135373115539551},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.5770964622497559},{"id":"https://openalex.org/keywords/replication","display_name":"Replication (statistics)","score":0.5718480944633484},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.5200552344322205},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4718446731567383},{"id":"https://openalex.org/keywords/reading","display_name":"Reading (process)","score":0.4274522662162781},{"id":"https://openalex.org/keywords/programming-paradigm","display_name":"Programming paradigm","score":0.41909992694854736},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.41665709018707275},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.32903769612312317},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.1774444878101349},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13529640436172485},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0962517261505127}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7916370630264282},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6983844637870789},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.650301992893219},{"id":"https://openalex.org/C2778562939","wikidata":"https://www.wikidata.org/wiki/Q1298791","display_name":"Synchronization (alternating current)","level":3,"score":0.6135373115539551},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.5770964622497559},{"id":"https://openalex.org/C12590798","wikidata":"https://www.wikidata.org/wiki/Q3933199","display_name":"Replication (statistics)","level":2,"score":0.5718480944633484},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.5200552344322205},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4718446731567383},{"id":"https://openalex.org/C554936623","wikidata":"https://www.wikidata.org/wiki/Q199657","display_name":"Reading (process)","level":2,"score":0.4274522662162781},{"id":"https://openalex.org/C34165917","wikidata":"https://www.wikidata.org/wiki/Q188267","display_name":"Programming paradigm","level":2,"score":0.41909992694854736},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.41665709018707275},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.32903769612312317},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.1774444878101349},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13529640436172485},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0962517261505127},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/saintw.2004.1268699","is_oa":false,"landing_page_url":"https://doi.org/10.1109/saintw.2004.1268699","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2004 International Symposium on Applications and the Internet Workshops. 2004 Workshops.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W4713330","https://openalex.org/W2032843575","https://openalex.org/W2045867114","https://openalex.org/W2103815459","https://openalex.org/W2109982223","https://openalex.org/W2117665131","https://openalex.org/W2133022700","https://openalex.org/W2133373086","https://openalex.org/W2138180780","https://openalex.org/W2149378868","https://openalex.org/W2162286721","https://openalex.org/W2176864362","https://openalex.org/W4245668478","https://openalex.org/W4247100129","https://openalex.org/W6600191031"],"related_works":["https://openalex.org/W4205713785","https://openalex.org/W3016766501","https://openalex.org/W4398287560","https://openalex.org/W4398914716","https://openalex.org/W4398619072","https://openalex.org/W4398556994","https://openalex.org/W4398472861","https://openalex.org/W4398934068","https://openalex.org/W4398686282","https://openalex.org/W4398870170"],"abstract_inverted_index":{"This":[0,91],"paper":[1,92],"describes":[2,94],"the":[3,49,95,117,131,140],"design":[4],"and":[5,36,58,72,77,81,104,120],"implementation":[6],"of":[7,53,79,97,133,144,151],"a":[8,19,29],"parallel":[9,153],"programming":[10],"environment":[11],"called":[12],"\"distributed":[13],"shared":[14,20],"array\"":[15],"(DSA),":[16],"which":[17,126],"provides":[18],"global":[21,38,111],"array":[22,54,66,69,74,124],"abstract":[23],"across":[24],"different":[25],"machines":[26,47],"connected":[27],"by":[28,62,139],"network.":[30,50],"In":[31,108],"DSA,":[32],"users":[33],"can":[34,41],"define":[35],"use":[37,96],"arrays":[39,112],"that":[40,150],"be":[42,128],"accessed":[43],"uniformly":[44],"from":[45],"any":[46],"in":[48,130,156],"Explicit":[51],"management":[52],"area":[55],"allocation,":[56],"replication,":[57],"migration":[59],"is":[60,85],"achieved":[61],"explicit":[63],"calls":[64],"for":[65,100,115],"manipulation:":[67],"defining":[68],"regions,":[70,75],"reading":[71],"writing":[73],"synchronization,":[76],"control":[78],"replication":[80],"migration.":[82],"The":[83],"DSA":[84,145],"integrated":[86],"with":[87],"Grid":[88],"(Globus)":[89],"services.":[90],"also":[93],"our":[98],"model":[99],"gene":[101],"cluster":[102],"analysis":[103],"molecular":[105],"dynamics":[106],"simulation.":[107],"these":[109],"applications,":[110],"are":[113,136],"used":[114],"storing":[116],"distance":[118],"matrix":[119],"atom":[121],"coordinates.":[122],"Large":[123],"areas,":[125],"cannot":[127],"stored":[129],"memory":[132],"individual":[134],"machines,":[135],"made":[137],"available":[138],"DSA.":[141],"Scalable":[142],"performance":[143],"was":[146],"obtained":[147],"compared":[148],"to":[149],"conventional":[152],"programs":[154],"written":[155],"MPI.":[157]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
